mRNA_H-elongata_contig110942.898.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110942.898.1
Unique NamemRNA_H-elongata_contig110942.898.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110942.898.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 9.510e-30
Identity = 83/167 (49.70%), Postives = 98/167 (58.68%), Query Frame = 1 
Query:    1 LESARLFHFEGPLALLPGDGAAS-LETDASASSSARRASSSALFYNPFDNTSSDLAEVFDVEESVDDWENDGSGGADFFGERGPR--HRGKAAGKGEXXXPGAELPARWAAEEIGKVVARFSNPLRVPLELECVKAVLEGGAAVQAFPTSVVLPPKAEFHEVRFVVM 492
            LESARL H  G LALLPGDGAAS                    FYNPF+     + +  + E        +G G  D  GE G R    G+  G      PGAELPARWAA E G+VVARFSNPL+VPLE+E + AV++G A VQAFPTSV+LPP+AEFHE   VV+
Sbjct:  141 LESARLLHLHGGLALLPGDGAASQAXXXXXXXXXXXXXXXXXXFYNPFEEAVGGMDDXXESE--------NGDGDIDSHGEEGGRATQTGQGGGGDSGGRPGAELPARWAAGETGRVVARFSNPLQVPLEVESITAVVDG-ARVQAFPTSVLLPPRAEFHEDGQVVL 298
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BLAST of mRNA_H-elongata_contig110942.898.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 6.470e-20
Identity = 47/62 (75.81%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:  292 PGAELPARWAAEEIGKVVARFSNPLRVPLELECVKAVLEGGAAVQAFPTSVVLPPKAEFHEV 477
            PGAELPARWAA E G+VV RFSNPL+VPLE+E + AV++G A VQAFPTSV+LPP+AEFHEV
Sbjct:  827 PGAELPARWAAGETGRVVTRFSNPLQVPLEVESITAVVDG-ARVQAFPTSVLLPPRAEFHEV 887
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110942.898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF7_ECTSI9.510e-3049.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H9_9PHAE6.470e-2075.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110942contigH-elongata_contig110942:2..1245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.9261482-CDS-H-elongata_contig110942:1..2661622929634.9261482-CDS-H-elongata_contig110942:1..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110942 2..266 +
1691679100.075054-CDS-H-elongata_contig110942:1..2661691679100.075054-CDS-H-elongata_contig110942:1..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110942 2..266 +
1622929634.9429677-CDS-H-elongata_contig110942:1018..12451622929634.9429677-CDS-H-elongata_contig110942:1018..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110942 1019..1245 +
1691679100.0832515-CDS-H-elongata_contig110942:1018..12451691679100.0832515-CDS-H-elongata_contig110942:1018..1245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110942 1019..1245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110942.898.1prot_H-elongata_contig110942.898.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110942 2..1245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110942.898.1

>prot_H-elongata_contig110942.898.1 ID=prot_H-elongata_contig110942.898.1|Name=mRNA_H-elongata_contig110942.898.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
LESARLFHFEGPLALLPGDGAASLETDASASSSARRASSSALFYNPFDNT
SSDLAEVFDVEESVDDWENDGSGGADFFGERGPRHRGKAAGKGEGPGPGA
ELPARWAAEEIGKVVARFSNPLRVPLELECVKAVLEGGAAVQAFPTSVVL
PPKAEFHEVRFVVM
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mRNA from alignment at H-elongata_contig110942:2..1245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110942.898.1 ID=mRNA_H-elongata_contig110942.898.1|Name=mRNA_H-elongata_contig110942.898.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1244bp|location=Sequence derived from alignment at H-elongata_contig110942:2..1245+ (Himanthalia elongata Himel1 dioecious)
CTGGAATCGGCCCGCCTCTTCCACTTCGAAGGTCCTCTGGCCCTTCTCCC
CGGAGACGGCGCCGCGTCGCTCGAAACAGACGCTTCCGCGTCATCCTCCG
CGCGGCGAGCCTCCTCCAGCGCGCTGTTCTACAATCCCTTCGACAACACC
TCAAGCGACCTTGCAGAAGTTTTTGACGTTGAGGAAAGCGTTGACGACTG
GGAGAACGACGGAAGCGGAGGGGCAGATTTCTTTGGGGAGAGAGGGCCAA
GACACCGTGGCAAAGGTATGCGAAATTGGGGTTGGGCCACGACGTCCATA
AGGGGTGGGGTGGGAGGAGGGAATCCCCTGTGGGTCGTGCTCGGCTCTTA
CGAACTATTTTTGCTTTGCTGCGAAGAAAAAGAGGAGGGATAGAGGGGGC
TGTACTCAAGTTTTGCATGTCTTAGGCCATTGAACACGCTTTTTCAGGAG
GATGGGTAATTCGTTGTACATGTGTGGTCGATCGCCAATGCCCGATCATT
CCCTTTTTACTCACCCAAAGCTAGGGATATTTTTTAAAGAATTTGCTGGG
GGAGATGGGCAGAGGTAGAAAGGTAGTGAAGGGGCCCTGAAGCTGTGGGA
TTTCCAAAGTATTTTTAGGCGGGAAAAGACACGACAGTTGGTCCCGAACC
CTCTTTTATGGGGTGATATATTTAGGGGGTACCGCTGTGCAGCCCGCGGT
GGTTCTTGCGCCGCCTAGTTCTATCATGGCGTGTACTAGGGGATGGATTC
CCCTCTTGTTTTACCTAGGGCCTTTTCGTATAAAACATTTTTACCACTGA
TTGGAAGGTTGGCGTAGCTGGTTTTGTGTGTGTGTGTGTGTGTGTATGCG
TGGTTTGTAGAGTTACAGCAGCAGCCTAACGTCCTGCTTTACCAAAATCT
TCTTCCGAGAAACAGGTGGTCGGGAGGAAAGGAGCTCCAACGTTGCACCA
TCGACGACGCCGGCCCACAACCGGGGGGAAAGAAATCGGGTTTCCAAAAG
ACGGGGTGGGAGAGGAGCGGCGGGAAAAGGGGAAGGGCCCGGGCCCGGGG
CCGAGCTTCCCGCGCGCTGGGCGGCGGAGGAGATTGGCAAGGTAGTGGCG
AGATTTTCCAACCCGCTGCGCGTGCCGCTAGAGTTGGAGTGCGTGAAGGC
GGTGTTGGAAGGCGGCGCGGCCGTCCAGGCGTTTCCCACCAGCGTCGTGC
TCCCGCCCAAGGCCGAGTTCCACGAGGTACGATTTGTTGTGATG
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Coding sequence (CDS) from alignment at H-elongata_contig110942:2..1245+

>mRNA_H-elongata_contig110942.898.1 ID=mRNA_H-elongata_contig110942.898.1|Name=mRNA_H-elongata_contig110942.898.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig110942:2..1245+ (Himanthalia elongata Himel1 dioecious)
CTGGAATCGGCCCGCCTCTTCCACTTCGAAGGTCCTCTGGCCCTTCTCCC
CGGAGACGGCGCCGCGTCGCTCGAAACAGACGCTTCCGCGTCATCCTCCG
CGCGGCGAGCCTCCTCCAGCGCGCTGTTCTACAATCCCTTCGACAACACC
TCAAGCGACCTTGCAGAAGTTTTTGACGTTGAGGAAAGCGTTGACGACTG
GGAGAACGACGGAAGCGGAGGGGCAGATTTCTTTGGGGAGAGAGGGCCAA
GACACCGTGGCAAAGCTGGAATCGGCCCGCCTCTTCCACTTCGAAGGTCC
TCTGGCCCTTCTCCCCGGAGACGGCGCCGCGTCGCTCGAAACAGACGCTT
CCGCGTCATCCTCCGCGCGGCGAGCCTCCTCCAGCGCGCTGTTCTACAAT
CCCTTCGACAACACCTCAAGCGACCTTGCAGAAGTTTTTGACGTTGAGGA
AAGCGTTGACGACTGGGAGAACGACGGAAGCGGAGGGGCAGATTTCTTTG
GGGAGAGAGGGCCAAGACACCGTGGCAAAGCGGCGGGAAAAGGGGAAGGG
CCCGGGCCCGGGGCCGAGCTTCCCGCGCGCTGGGCGGCGGAGGAGATTGG
CAAGGTAGTGGCGAGATTTTCCAACCCGCTGCGCGTGCCGCTAGAGTTGG
AGTGCGTGAAGGCGGTGTTGGAAGGCGGCGCGGCCGTCCAGGCGTTTCCC
ACCAGCGTCGTGCTCCCGCCCAAGGCCGAGTTCCACGAGGTACGATTTGT
TGTGATGCGGCGGGAAAAGGGGAAGGGCCCGGGCCCGGGGCCGAGCTTCC
CGCGCGCTGGGCGGCGGAGGAGATTGGCAAGGTAGTGGCGAGATTTTCCA
ACCCGCTGCGCGTGCCGCTAGAGTTGGAGTGCGTGAAGGCGGTGTTGGAA
GGCGGCGCGGCCGTCCAGGCGTTTCCCACCAGCGTCGTGCTCCCGCCCAA
GGCCGAGTTCCACGAGGTACGATTTGTTGTGATG
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