mRNA_H-elongata_contig110877.895.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110877.895.1
Unique NamemRNA_H-elongata_contig110877.895.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Match: D7FS16_ECTSI (Carboxylic ester hydrolase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS16_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 4.570e-31
Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 2 
Query:  272 MEWLRKQPRTVDVTTESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKLRWRPPQPVRSWDGVKITRRYGPEV 493
            MEWLRK PRTVDV T  GVVRGSL+RDRE Q V+A+FNGIPYA PPVG+LRW+PPQPV  W+GVK+TRRYGPE 
Sbjct:    1 MEWLRKYPRTVDVETADGVVRGSLLRDREFQKVIAVFNGIPYARPPVGELRWQPPQPVEPWEGVKVTRRYGPEA 74
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BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Match: A0A2P6BZT7_9BACT (Carboxylic ester hydrolase n=1 Tax=Salinibacter sp. 10B TaxID=1923971 RepID=A0A2P6BZT7_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.620e-11
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 2 
Query:  293 PRTVDVTTESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKLRWRPPQPVRSWDGVKITRRYGPEVRNT 502
            PR   V+T +G V G+ + D  H      F GIPYA+PP+G+ RWRPPQPV SW GV+   R+GP    T
Sbjct:   20 PRAQVVSTANGRVEGTPVSDGVHA-----FKGIPYAKPPIGERRWRPPQPVESWSGVRSATRFGPRCMQT 84
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BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Match: UPI000F8D7A82 (carboxylesterase family protein n=1 Tax=Muricauda oceanensis TaxID=2499163 RepID=UPI000F8D7A82)

HSP 1 Score: 73.2 bits (178), Expect = 2.220e-11
Identity = 33/61 (54.10%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:  308 VTTESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKLRWRPPQPVRSWDGVKITRRYGPE 490
            VTTESG+++G  + D      V  F GIPYA PPVG+ RWRPPQPV +W GV+    YGP+
Sbjct:   28 VTTESGILKGVQVND------VVSFKGIPYAAPPVGEFRWRPPQPVSAWTGVREASTYGPD 82
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BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Match: A0A7X7TQB6_9BACT (Carboxylic ester hydrolase (Fragment) n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X7TQB6_9BACT)

HSP 1 Score: 71.2 bits (173), Expect = 5.190e-11
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 2 
Query:  314 TESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKLRWRPPQPVRSWDGVKITRRYGPEV 493
            TE+GV+ G        +A V IF GIPYA+PPVG+LRWR PQPV++W+GV+ T  +GP  
Sbjct:   32 TENGVIEGF------ERAGVKIFRGIPYAQPPVGELRWREPQPVKNWEGVRKTTHFGPRA 85
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BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Match: UPI001B836C8D (carboxylesterase family protein n=1 Tax=Actinospica sp. MGRD01-02 TaxID=2828514 RepID=UPI001B836C8D)

HSP 1 Score: 72.0 bits (175), Expect = 5.440e-11
Identity = 33/60 (55.00%), Postives = 39/60 (65.00%), Query Frame = 2 
Query:  308 VTTESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKLRWRPPQPVRSWDGVKITRRYGP 487
            V T SG V G   RDR     + +F GIPYA+PPVG+LRWRPPQP   W GV+   R+GP
Sbjct:    5 VETASGPVEGIPARDRS----ITVFRGIPYAQPPVGELRWRPPQPPERWSGVRRAHRFGP 60
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BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Match: A0A7X9D893_9BACT (Carboxylic ester hydrolase n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A7X9D893_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 7.330e-11
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:  314 TESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKLRWRPPQPVRSWDGVKITRRYGPEV 493
            TE+GV+ G        +A V IF GIPYA+PPVGKLRWR PQPV++W GVK T  +GP  
Sbjct:   32 TENGVIEGF------ERAGVKIFRGIPYAQPPVGKLRWREPQPVKNWRGVKKTIHFGPRA 85
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BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Match: UPI001BE3F7CC (carboxylesterase family protein n=1 Tax=Nonomuraea sp. NEAU-A123 TaxID=2839649 RepID=UPI001BE3F7CC)

HSP 1 Score: 71.6 bits (174), Expect = 7.360e-11
Identity = 34/60 (56.67%), Postives = 41/60 (68.33%), Query Frame = 2 
Query:  308 VTTESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKLRWRPPQPVRSWDGVKITRRYGP 487
            V TESG+V G   RDR     + +F GIPYA PPVG+LRWRPPQP   W GV+ T+ +GP
Sbjct:    5 VETESGLVEGIPGRDRS----LTVFRGIPYAAPPVGELRWRPPQPPAPWPGVRKTQSFGP 60
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BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Match: UPI001CFE2D2A (carboxylesterase family protein n=1 Tax=Streptomyces bambusae TaxID=1550616 RepID=UPI001CFE2D2A)

HSP 1 Score: 71.2 bits (173), Expect = 9.840e-11
Identity = 37/66 (56.06%), Postives = 42/66 (63.64%), Query Frame = 2 
Query:  290 QPRTVDVTTESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKLRWRPPQPVRSWDGVKITRRYGP 487
            QP  V VTT +G VRGS    R  +  +A F GIPYAEPPVG LR+  PQP R WDGV+    YGP
Sbjct:   10 QPAPVTVTTTAGAVRGS----RAGRPGIAAFLGIPYAEPPVGPLRFAAPQPARPWDGVRDAGAYGP 71
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BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Match: UPI001F31863C (carboxylesterase family protein n=1 Tax=Streptomyces sp. NRRL F-525 TaxID=1463861 RepID=UPI001F31863C)

HSP 1 Score: 71.2 bits (173), Expect = 9.930e-11
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 2 
Query:  314 TESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKLRWRPPQPVRSWDGVKITRRYGP 487
            TE+G+V G   RDR     V +F GIPYA PPVG+LRWRPPQP  +W GV+  R +GP
Sbjct:    3 TEAGLVEGIPGRDR----AVTVFRGIPYAAPPVGELRWRPPQPPPTWPGVRAARTFGP 56
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BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Match: A0A1J4NQR3_9ACTN (Carboxylic ester hydrolase n=1 Tax=Streptomyces mangrovisoli TaxID=1428628 RepID=A0A1J4NQR3_9ACTN)

HSP 1 Score: 71.2 bits (173), Expect = 9.960e-11
Identity = 34/60 (56.67%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:  308 VTTESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKLRWRPPQPVRSWDGVKITRRYGP 487
            V TE+G V G   RDR     V +F GIPYA PPVG+LRWRPPQP   W+GV+   R+GP
Sbjct:    5 VHTEAGPVEGVPCRDRS----VTVFRGIPYAAPPVGELRWRPPQPPPRWEGVRRADRFGP 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110877.895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS16_ECTSI4.570e-3177.03Carboxylic ester hydrolase n=2 Tax=Ectocarpus TaxI... [more]
A0A2P6BZT7_9BACT1.620e-1148.57Carboxylic ester hydrolase n=1 Tax=Salinibacter sp... [more]
UPI000F8D7A822.220e-1154.10carboxylesterase family protein n=1 Tax=Muricauda ... [more]
A0A7X7TQB6_9BACT5.190e-1153.33Carboxylic ester hydrolase (Fragment) n=1 Tax=Bact... [more]
UPI001B836C8D5.440e-1155.00carboxylesterase family protein n=1 Tax=Actinospic... [more]
A0A7X9D893_9BACT7.330e-1156.67Carboxylic ester hydrolase n=1 Tax=Bacteroidales b... [more]
UPI001BE3F7CC7.360e-1156.67carboxylesterase family protein n=1 Tax=Nonomuraea... [more]
UPI001CFE2D2A9.840e-1156.06carboxylesterase family protein n=1 Tax=Streptomyc... [more]
UPI001F31863C9.930e-1156.90carboxylesterase family protein n=1 Tax=Streptomyc... [more]
A0A1J4NQR3_9ACTN9.960e-1156.67Carboxylic ester hydrolase n=1 Tax=Streptomyces ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110877contigH-elongata_contig110877:567..1552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue3.3e-28
Seed eggNOG ortholog2880.D7FS16
KEGG rclassRC00041,RC00475,RC00476,RC02264
KEGG koko:K03927
KEGG ReactionR08220,R08255,R08258
KEGG Pathwayko00983,map00983
EggNOG free text desc.carboxylic ester hydrolase activity
EggNOG OGsCOG2272@1,KOG1516@2759
EC3.1.1.1,3.1.1.56,3.1.1.84
COG Functional cat.I
CAZyCE10
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size684
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110877.895.1prot_H-elongata_contig110877.895.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110877 740..1281 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.6292584-UTR-H-elongata_contig110877:566..7391622929634.6292584-UTR-H-elongata_contig110877:566..739Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110877 567..739 -
1691679099.9438043-UTR-H-elongata_contig110877:566..7391691679099.9438043-UTR-H-elongata_contig110877:566..739Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110877 567..739 -
1622929634.6863086-UTR-H-elongata_contig110877:1281..15521622929634.6863086-UTR-H-elongata_contig110877:1281..1552Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110877 1282..1552 -
1691679099.9760535-UTR-H-elongata_contig110877:1281..15521691679099.9760535-UTR-H-elongata_contig110877:1281..1552Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110877 1282..1552 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.6542768-CDS-H-elongata_contig110877:739..8661622929634.6542768-CDS-H-elongata_contig110877:739..866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110877 740..866 -
1691679099.9559133-CDS-H-elongata_contig110877:739..8661691679099.9559133-CDS-H-elongata_contig110877:739..866Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110877 740..866 -
1622929634.6719782-CDS-H-elongata_contig110877:1168..12811622929634.6719782-CDS-H-elongata_contig110877:1168..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110877 1169..1281 -
1691679099.9659028-CDS-H-elongata_contig110877:1168..12811691679099.9659028-CDS-H-elongata_contig110877:1168..1281Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110877 1169..1281 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110877.895.1

>prot_H-elongata_contig110877.895.1 ID=prot_H-elongata_contig110877.895.1|Name=mRNA_H-elongata_contig110877.895.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MEWLRKQPRTVDVTTESGVVRGSLIRDREHQAVVAIFNGIPYAEPPVGKL
RWRPPQPVRSWDGVKITRRYGPEVRNTYS*
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mRNA from alignment at H-elongata_contig110877:567..1552-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110877.895.1 ID=mRNA_H-elongata_contig110877.895.1|Name=mRNA_H-elongata_contig110877.895.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=986bp|location=Sequence derived from alignment at H-elongata_contig110877:567..1552- (Himanthalia elongata Himel1 dioecious)
ACCTGGTTGAGGTTTTTCAGCAAAAACGTAAAATAAAAATTGGTAAAATT
TGTAGAATTGATGGTATCCTTTGTTTTCTAACAAAGTGTCTGAATTTATA
TTTGTACTTTACAATGTGAAGCTTTGAAGGCAAGGGGAAAAAACCCAAAT
ACGAGCAGATTTCGCCGACGCTACAGCCTATCAATCCGGTGCCTCACAAA
CGGAACATCTGCATCATTTCTACATTCACAATCAATCGTCGCTATTTCAA
AATCAACAGGTGTGAAATAAAATGGAGTGGCTTCGGAAGCAGCCTAGGAC
GGTAGATGTGACGACCGAGAGTGGAGTCGTGAGGGGATCGTTAATCCGGG
ACCGTGAACATCAGGCTGTCGTTGCGATTTTTAAGTGAGTCTCGAGACGA
ACACGAACACGAACACCCTCAAAACGGCGGACGGATCAGAGTAAAACTCT
CAACGAAAGGACACGTCAGTTCACTGTACTGCACAGCTATACAGTAGAAC
GATTCAATCAAAATGACTTGTGATTGAATAGCGGATCAAGGAGTAGCGAT
AAGATCTCAGAGGACGGCGGGATGTGGGTTCAATGTGTGCAATCCGAGAC
TAGGCCGACGTCGTTCTCGTGTTTCGCCTTGTGTCCCCTTCCAATCGCTT
CACCCCCCCTTTTTTTTTTCTCTCCCGCTTCATCAGCGGCATTCCGTATG
CCGAACCTCCCGTTGGAAAGCTCCGATGGAGACCGCCTCAGCCCGTAAGG
TCTTGGGATGGCGTAAAGATAACCCGTCGATACGGGCCGGAGGTGAGGAA
TACATATTCTTAGCTTCGTTCCTGGAGCGTGTTCACGCGTTTAAAGGGCG
AGGAGTATTTTCCCCCAGGGCACGGAAAGTGCCAGACCCGAAAGGAAAGC
AATGGGCAGGAGATGACGAAGTTCCTAACTAAACAAGAGCCAATGATGAA
CCCGTGTGGGTCTACCCGAATCGAAATCATGGGGTT
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Coding sequence (CDS) from alignment at H-elongata_contig110877:567..1552-

>mRNA_H-elongata_contig110877.895.1 ID=mRNA_H-elongata_contig110877.895.1|Name=mRNA_H-elongata_contig110877.895.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig110877:567..1552- (Himanthalia elongata Himel1 dioecious)
ATGGAGTGGCTTCGGAAGCAGCCTAGGACGGTAGATGTGACGACCGAGAG
TGGAGTCGTGAGGGGATCGTTAATCCGGGACCGTGAACATCAGGCTGTCG
TTGCGATTTTTAAATGGAGTGGCTTCGGAAGCAGCCTAGGACGGTAGATG
TGACGACCGAGAGTGGAGTCGTGAGGGGATCGTTAATCCGGGACCGTGAA
CATCAGGCTGTCGTTGCGATTTTTAACGGCATTCCGTATGCCGAACCTCC
CGTTGGAAAGCTCCGATGGAGACCGCCTCAGCCCGTAAGGTCTTGGGATG
GCGTAAAGATAACCCGTCGATACGGGCCGGAGGTGAGGAATACATATTCT
TAGCGGCATTCCGTATGCCGAACCTCCCGTTGGAAAGCTCCGATGGAGAC
CGCCTCAGCCCGTAAGGTCTTGGGATGGCGTAAAGATAACCCGTCGATAC
GGGCCGGAGGTGAGGAATACATATTCTTAG
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