mRNA_H-elongata_contig110874.894.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110874.894.1
Unique NamemRNA_H-elongata_contig110874.894.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110874.894.1 vs. uniprot
Match: A0A6H5K1F0_9PHAE (IPPc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1F0_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 4.200e-15
Identity = 42/78 (53.85%), Postives = 55/78 (70.51%), Query Frame = 2 
Query:  212 KEAQGEIKE---KIYITRSPNSAGLPSEWGNRMRLGESLVSITTPKAEDRDLSGGRVVNEEAIYNMRKRWISDRLRER 436
            +E+Q ++ E   +  +    +S  +  E G  MR G++L SIT P ++DR+LSGGRVVNEEAIYNMRKRWISDRL ER
Sbjct:    9 QESQWQLDEDGGECDVPTGGSSRHVSREAGGGMRRGDTLRSITMPTSDDRELSGGRVVNEEAIYNMRKRWISDRLMER 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110874.894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K1F0_9PHAE4.200e-1553.85IPPc domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110874contigH-elongata_contig110874:753..1247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.5
Seed ortholog evalue7.5e-12
Seed eggNOG ortholog2880.D7G6P2
KEGG rclassRC00078
KEGG koko:K01099,ko:K20279
KEGG ReactionR04404,R09827
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
EggNOG free text desc.phosphatidylinositol dephosphorylation
EggNOG OGsCOG5411@1,KOG0565@2759
EC3.1.3.36
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size439
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110874.894.1prot_H-elongata_contig110874.894.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110874 753..893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.55601-CDS-H-elongata_contig110874:752..8931622929634.55601-CDS-H-elongata_contig110874:752..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110874 753..893 -
1691679099.902657-CDS-H-elongata_contig110874:752..8931691679099.902657-CDS-H-elongata_contig110874:752..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110874 753..893 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.5722537-UTR-H-elongata_contig110874:893..9481622929634.5722537-UTR-H-elongata_contig110874:893..948Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110874 894..948 -
1691679099.9148383-UTR-H-elongata_contig110874:893..9481691679099.9148383-UTR-H-elongata_contig110874:893..948Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110874 894..948 -
1622929634.583805-UTR-H-elongata_contig110874:1004..12471622929634.583805-UTR-H-elongata_contig110874:1004..1247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110874 1005..1247 -
1691679099.9270117-UTR-H-elongata_contig110874:1004..12471691679099.9270117-UTR-H-elongata_contig110874:1004..1247Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110874 1005..1247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110874.894.1

>prot_H-elongata_contig110874.894.1 ID=prot_H-elongata_contig110874.894.1|Name=mRNA_H-elongata_contig110874.894.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=47bp
MRLGESLVSITTPKAEDRDLSGGRVVNEEAIYNMRKRWISDRLRER*
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mRNA from alignment at H-elongata_contig110874:753..1247-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110874.894.1 ID=mRNA_H-elongata_contig110874.894.1|Name=mRNA_H-elongata_contig110874.894.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=495bp|location=Sequence derived from alignment at H-elongata_contig110874:753..1247- (Himanthalia elongata Himel1 dioecious)
CCCGCCCAAGCAAAGCTTTAGTTCTTGTGTGCCCCAATTGAAACTAGAAC
TTGGTACTCTGTGTTGGATACTGAAAAAGCCAAAGGTCGATCAATACACG
ACCGAGGCTGTTCGTTCGTCCTAGCGCACTAGCCCGAGTTCGAGCCATCG
AGCACCTCATCCAAATCTGAGCGGTGGTTTTATCCTATGCGGTCATTTCG
CACGAGACGCCAAGGAAGCCCAAGGGGAGATAAAGGAGAAGATGCCGAGA
GGGTTGATTCTCCGCTAGCTACAGTCCTGTCCGATCAGGGAACTTATAGC
TATATCACCCGCAGCCCTAATTCCGCCGGCCTACCGTCGGAATGGGGAAA
TCGAATGAGGCTTGGCGAATCCCTCGTTAGTATCACGACGCCCAAAGCCG
AGGACCGTGACCTCAGCGGTGGCCGGGTAGTGAATGAGGAGGCGATCTAC
AACATGCGGAAGAGGTGGATCAGCGACCGTTTAAGGGAGAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig110874:753..1247-

>mRNA_H-elongata_contig110874.894.1 ID=mRNA_H-elongata_contig110874.894.1|Name=mRNA_H-elongata_contig110874.894.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=282bp|location=Sequence derived from alignment at H-elongata_contig110874:753..1247- (Himanthalia elongata Himel1 dioecious)
ATGAGGCTTGGCGAATCCCTCGTTAGTATCACGACGCCCAAAGCCGAGGA
CCGTGACCTCAGCGGTGGCCGGGTAGTGAATGAGGAGGCGATCTACAACA
TGCGGAAGAGGTGGATCAGCGACCGTTTAAGGGAGAGGTAAATGAGGCTT
GGCGAATCCCTCGTTAGTATCACGACGCCCAAAGCCGAGGACCGTGACCT
CAGCGGTGGCCGGGTAGTGAATGAGGAGGCGATCTACAACATGCGGAAGA
GGTGGATCAGCGACCGTTTAAGGGAGAGGTAA
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