mRNA_H-elongata_contig110856.891.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Match: A0A2I6U1M4_SACJA (Tic20-like protein n=15 Tax=Saccharina japonica TaxID=88149 RepID=A0A2I6U1M4_SACJA) HSP 1 Score: 264 bits (675), Expect = 2.120e-84 Identity = 137/198 (69.19%), Postives = 162/198 (81.82%), Query Frame = 1
Query: 16 RQARMEERQRLLEDKTKSEAG-----VVSVGEANNGPATTTDKALSALAYILPLADSMVFAAHLFTTFPEQTAWVQPIAAALLILRSVPFATLAGFFTLSILSSNPEVNKLVRFDMQQAINLDIALFLPSWIGALASLALGQDAYKLLPLSQAGSDVIFVTMLVAVAYSIGVSATGAFPNKLPVIGRFNRENPDRDEE 594
RQAR+EERQR +EDK +E G VV G N+GPAT DKALSAL Y+LPL D + FA HLF FPEQTAW QP+AA LL LRS+PFATL GFF+LS LS NP+VNKLVRF+MQQAINLDIAL +P +GALAS++LGQDAYKL+PL++AGSDV+FV ML AVAYS+ S+TG+FPNKLP++GR NRENPDR+EE
Sbjct: 214 RQARVEERQRQMEDKLAAEVGTGAGAVVPAGGVNDGPATAADKALSALPYLLPLVDGISFAGHLFGAFPEQTAWAQPLAAVLLALRSLPFATLVGFFSLSALSGNPQVNKLVRFNMQQAINLDIALIVPGVLGALASVSLGQDAYKLVPLAEAGSDVVFVAMLAAVAYSVVTSSTGSFPNKLPLLGRLNRENPDREEE 411
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Match: A0A6H5KVD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVD7_9PHAE) HSP 1 Score: 256 bits (655), Expect = 2.230e-84 Identity = 130/190 (68.42%), Postives = 154/190 (81.05%), Query Frame = 1
Query: 28 MEERQRLLEDKTKSEAGVVSV--GEANNGPATTTDKALSALAYILPLADSMVFAAHLFTTFPEQTAWVQPIAAALLILRSVPFATLAGFFTLSILSSNPEVNKLVRFDMQQAINLDIALFLPSWIGALASLALGQDAYKLLPLSQAGSDVIFVTMLVAVAYSIGVSATGAFPNKLPVIGRFNRENPDRDE 591
MEERQR ++DK + +AG V V G+ N+GPATT DKALSAL Y+LPLAD +VFAAHLF FPEQTAW +P+ A LL LRSVPFATL GFF+LS+ SSNP++NKLVRF+MQQAINLDIAL LP +GA+ LG DA KL PL+ AGSDV+FV +L AVAYS+G SATG+FPNKLP++GR NRENPD E
Sbjct: 1 MEERQRQMDDKMRPDAGAVEVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAEPLVAVLLALRSVPFATLIGFFSLSVGSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNQE 190
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Match: A0A6H5KUU9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUU9_9PHAE) HSP 1 Score: 251 bits (642), Expect = 3.160e-81 Identity = 132/197 (67.01%), Postives = 154/197 (78.17%), Query Frame = 1
Query: 7 DEERQARMEERQRLLEDKTKSEAGVVSV--GEANNGPATTTDKALSALAYILPLADSMVFAAHLFTTFPEQTAWVQPIAAALLILRSVPFATLAGFFTLSILSSNPEVNKLVRFDMQQAINLDIALFLPSWIGALASLALGQDAYKLLPLSQAGSDVIFVTMLVAVAYSIGVSATGAFPNKLPVIGRFNRENPDRDE 591
+EER ARME K + +AG V V G+ N+GPATT DKALSAL Y+LPLAD +VFAAHLF FPEQTAW QP+AA LL LRSVPFATL GFF+LS+ SSNP++NKLVRF+MQQAINLDIAL LP +GA+ LG DA KL PL+ AGSDV+FV +L AVAYS+G SATG+FPNKLP++GR NRENPD E
Sbjct: 76 EEERVARMEXXXXXXXXKMRPDAGAVEVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLVGFFSLSVGSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNQE 272
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Match: D8LS19_ECTSI (EF-hand domain-containing protein n=7 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS19_ECTSI) HSP 1 Score: 252 bits (644), Expect = 1.000e-79 Identity = 133/197 (67.51%), Postives = 155/197 (78.68%), Query Frame = 1
Query: 7 DEERQARMEERQRLLEDKTKSEAG--VVSVGEANNGPATTTDKALSALAYILPLADSMVFAAHLFTTFPEQTAWVQPIAAALLILRSVPFATLAGFFTLSILSSNPEVNKLVRFDMQQAINLDIALFLPSWIGALASLALGQDAYKLLPLSQAGSDVIFVTMLVAVAYSIGVSATGAFPNKLPVIGRFNRENPDRDE 591
+EER ARME D+ + +AG VVS G+ N+GPATT DKALSAL Y+LPLAD +VFAAHLF FPEQTAW QP+AA LL LRSVPFATL GFF+LSI SSNP++NKLVRF+MQQAINLDIAL LP +GA+ LG DA KL PL+ A SDV+FV +L AVAYS+G SATG+FPNKLP++GR NRENPD E
Sbjct: 213 EEERVARMEXXXXXXXDRMRPDAGTVVVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFPEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIWSSNPQINKLVRFNMQQAINLDIALILPGVVGAITGAVLGSDASKLAPLANASSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPDNQE 409
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Match: D7FRG5_ECTSI (EF-hand domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRG5_ECTSI) HSP 1 Score: 221 bits (564), Expect = 7.350e-68 Identity = 120/176 (68.18%), Postives = 141/176 (80.11%), Query Frame = 1
Query: 7 DEERQARMEERQRLLEDKTKSEAG--VVSVGEANNGPATTTDKALSALAYILPLADSMVFAAHLFTTFPEQTAWVQPIAAALLILRSVPFATLAGFFTLSILSSNPEVNKLVRFDMQQAINLDIALFLPSWIGALASLALGQDAYKLLPLSQAGSDVIFVTMLVAVAYSIGVSATG 528
++ER AR+EERQR ++DK + + G VVS G+ N+GPATT DKALSAL Y+LPL D ++FAAHLF FPEQTAW QP+AA LL LRS+PFATL GFF+LSI SSNP VNKLVRF+MQQAINLDIAL LP +GA+ LG DA KL PLS AGSDV+FV +L AVAYS+G SATG
Sbjct: 213 EDERLARLEERQRQMDDKMRPDTGAVVVSPGDVNDGPATTADKALSALPYLLPLVDGILFAAHLFGAFPEQTAWAQPLAAVLLALRSLPFATLIGFFSLSIGSSNPRVNKLVRFNMQQAINLDIALILPGVVGAITGGMLGADAVKLAPLSNAGSDVVFVALLAAVAYSVGTSATG 388
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Match: A0A6H5KCI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI4_9PHAE) HSP 1 Score: 176 bits (446), Expect = 4.870e-52 Identity = 101/198 (51.01%), Postives = 125/198 (63.13%), Query Frame = 1
Query: 7 DEERQARMEERQRLLEDKTKSEAG--VVSVGEANNGPATTTDKALSALAYILPLADSMVFAAHLFTTFPEQTAWVQPIAAALLILRSVPFATLAGFFTLSILSSNPEVNKLVRFDMQQAINLDIALFLPSWIGALASLALGQDAYKLLPLSQAGSDVIFVTMLVAVAYSIGVSATGAFPNKLPVIGRFNRENPDRDEE 594
+E+R ARMEERQR ++D + +AG VVS G+ N+G T D ALSAL Y+LPLAD +VFAAHLF FPEQTAW QP+AAA IN+DIAL LP +GA+A LG DA KL PL+ AGSDV+FV +L AVAYS+G SATG+FP+KLP++GR NRENP ++E
Sbjct: 77 EEKRLARMEERQRQMDDNMRPDAGAVVVSPGDVNDGLVNTADNALSALPYLLPLADGIVFAAHLFGVFPEQTAWAQPLAAA--------------------------------------INVDIALILPGVVGAIAGAVLGADAVKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPSKLPLLGRLNRENPGNEQE 236
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Match: A0A6H5JY95_9PHAE (EF-hand domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY95_9PHAE) HSP 1 Score: 180 bits (456), Expect = 1.180e-51 Identity = 96/197 (48.73%), Postives = 142/197 (72.08%), Query Frame = 1
Query: 1 RQDEERQARMEERQRLLEDKTKSEAGVVS-VGEANN--GPATTTDKALSALAYILPLADSMVFAAHLFTTFPEQTAWVQPIAAALLILRSVPFATLAGFFTLSILSSNPEVNKLVRFDMQQAINLDIALFLPSWIGALASLALGQDAYKLLPLSQAGSDVIFVTMLVAVAYSIGVSATGAFPNKLPVIGRFNRENPD 582
R++EE +AR ER+R ++ KT + ++S V +++ AT+ +KAL AL YILPL+D +V+A H+++TFP+Q AW +P+ A L+ + ++PFATL FF +SILSSN +NKL+RF+M QAIN DIAL +PS G L + +LG DAYK+ P++ +D++ V++++AVAYSI SATGA PNK+P G+ NR D
Sbjct: 206 RREEELEARQAERKREMDAKTTGKGKMLSSVADSDREAASATSLEKALCALPYILPLSDGIVYAQHIYSTFPQQMAWSEPLVAILIAVNNLPFATLVAFFGMSILSSNQNINKLLRFNMLQAINFDIALIVPSVFGPLLTWSLGSDAYKISPVTDIATDILSVSLVLAVAYSIAASATGAIPNKIPFFGKINRVTRD 402
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Match: A0A6H5JBJ0_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ0_9PHAE) HSP 1 Score: 172 bits (437), Expect = 7.270e-50 Identity = 100/197 (50.76%), Postives = 123/197 (62.44%), Query Frame = 1
Query: 7 DEERQARMEERQRLLEDKTKSEAGVVSVGEANNGPATTTDKALSALAYILPLADSMVFAAHLFTTFPEQTAWVQPIAAALLILRSVPFATLAGFFTLSILS-SNPEVNKLVRFDMQQAINLDIALFLPSWIGALASLALGQDAYKLLPLSQAGSDVIFVTMLVAVAYSIGVSATGAFPNKLPVIGRFNRENPDRDEE 594
++ER ARMEERQR ++DK + + G V TAW QP+AA LL LRSVPFATL GFF+LS+ NP+VNKLVRF+ QQAIN+DIAL LP +GA+A LG DA KL PL+ AGSDV+FV +L AVAYS+G SATG+FPNKLP++GR NRENP+ +E
Sbjct: 149 EDERVARMEERQRRMDDKMRPDTGAVV------------------------------------------TAWAQPLAAVLLALRSVPFATLIGFFSLSVHRLRNPQVNKLVRFNTQQAINVDIALILPGVVGAIAGAVLGADAVKLAPLANAGSDVVFVALLAAVAYSVGTSATGSFPNKLPLLGRLNRENPENQQE 303
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Match: D8LTM8_ECTSI (TIC 20 related, plastid import n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTM8_ECTSI) HSP 1 Score: 166 bits (420), Expect = 5.140e-46 Identity = 89/183 (48.63%), Postives = 122/183 (66.67%), Query Frame = 1
Query: 55 DKTKSEA---GVVSVGEANNGPATTTDKALSALAYILPLADSMVFAAHLFTTFPEQTAWVQPIAAALLILRSVPFATLAGFFTLSILSSNPEVNKLVRFDMQQAINLDIALFLPSWIGALASLALGQDAYKLLPLSQAGSDVIFVTMLVAVAYSIGVSATGAFPNKLPVIGRFNRENPDRDEE 594
DK + EA G+ + N+GP T TDK LS L Y LPL DS+VF AH+F TFP Q ++++P+ A LLI RS+PF+ L FF L ++ PEVNKLVRF+++QA+ LDIA+F PS + + LG+D+ KL PL+ +DVIFVT++ V YSI SA G P LP++G+ NRE+ E+
Sbjct: 243 DKARQEAKARGLALPEDFNDGPPTITDKLLSVLPYTLPLMDSLVFGAHIFQTFPTQLSFLEPLVAILLIYRSLPFSGLILFFGLQWFAAKPEVNKLVRFNLRQAVILDIAMFFPSIFAFIITSVLGEDSAKLAPLATVCNDVIFVTVVACVLYSIASSAIGVLPESLPILGKMNRESTRAKED 425
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Match: D8LS20_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS20_ECTSI) HSP 1 Score: 164 bits (414), Expect = 1.840e-45 Identity = 91/133 (68.42%), Postives = 105/133 (78.95%), Query Frame = 1
Query: 7 DEERQARMEERQRLLEDKTKSEAG--VVSVGEANNGPATTTDKALSALAYILPLADSMVFAAHLFTTFPEQTAWVQPIAAALLILRSVPFATLAGFFTLSILSSNPEVNKLVRFDMQQAINLDIALFLPSWIG 399
+EER ARME D+ + +AG VVS G+ N+GPATT DKALSAL Y+LPLAD +VFAAHLF F EQTAW QP+AA LL LRSVPFATL GFF+LSI SSNP++NKLVRF+MQQAINLDIAL LP +G
Sbjct: 213 EEERVARMEXXXXXXXDRMRPDAGTVVVSPGDVNDGPATTADKALSALPYVLPLADGVVFAAHLFGAFLEQTAWAQPLAAVLLALRSVPFATLIGFFSLSIGSSNPQINKLVRFNMQQAINLDIALILPGVVG 345 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110856.891.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig110856.891.1 >prot_H-elongata_contig110856.891.1 ID=prot_H-elongata_contig110856.891.1|Name=mRNA_H-elongata_contig110856.891.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=190bp MEERQRLLEDKTKSEAGVVSVGEANNGPATTTDKALSALAYILPLADSMVback to top mRNA from alignment at H-elongata_contig110856:1576..2172- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig110856.891.1 ID=mRNA_H-elongata_contig110856.891.1|Name=mRNA_H-elongata_contig110856.891.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=597bp|location=Sequence derived from alignment at H-elongata_contig110856:1576..2172- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig110856:1576..2172- >mRNA_H-elongata_contig110856.891.1 ID=mRNA_H-elongata_contig110856.891.1|Name=mRNA_H-elongata_contig110856.891.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1140bp|location=Sequence derived from alignment at H-elongata_contig110856:1576..2172- (Himanthalia elongata Himel1 dioecious)back to top |