mRNA_H-elongata_contig110818.889.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110818.889.1
Unique NamemRNA_H-elongata_contig110818.889.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Match: D7FS69_ECTSI (Vps16_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS69_ECTSI)

HSP 1 Score: 92.4 bits (228), Expect = 1.600e-21
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1 
Query:    1 MLADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIRDETKLLKV 174
            MLAD W +L +VQYRKIHLY+LDWA DEDR L   LVAVAKY GAVAM+RDETKLLK+
Sbjct:    1 MLADDWTTLRDVQYRKIHLYDLDWAEDEDRHLDRCLVAVAKYGGAVAMVRDETKLLKM 58
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BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Match: A0A6P4XUS8_BRABE (Vacuolar protein sorting-associated protein 16 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XUS8_BRABE)

HSP 1 Score: 50.1 bits (118), Expect = 1.790e-5
Identity = 27/57 (47.37%), Postives = 33/57 (57.89%), Query Frame = 1 
Query:    4 LADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIRDETKLLKV 174
            +   W  LG V YRK  +Y L W    D  L   +VA A Y G VA+IRDETKL++V
Sbjct:    4 VTGDWNPLGQVFYRKQEIYTLGW---RDIDLDKFVVAAAPYGGPVALIRDETKLVRV 57
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BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Match: L2G314_COLFN (Vacuolar protein sorting vps16 n=1 Tax=Colletotrichum fructicola (strain Nara gc5) TaxID=1213859 RepID=L2G314_COLFN)

HSP 1 Score: 49.3 bits (116), Expect = 3.340e-5
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    7 ADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIRDETKL 165
            + GW ++G+  YRKI LY   +  D+D  L ++LVA A Y+GA+A++RD+TKL
Sbjct:    8 SAGWENVGDKWYRKIQLYTEVF--DQDLDLDNHLVAGAPYAGALALLRDDTKL 58
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BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Match: C3ZIW0_BRAFL (Vacuolar protein sorting-associated protein 16 homolog n=6 Tax=Branchiostoma TaxID=7737 RepID=C3ZIW0_BRAFL)

HSP 1 Score: 49.3 bits (116), Expect = 3.360e-5
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    4 LADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIRDETKLLKV 174
            +   W  LG V YRK  +Y++ W    D  L   +VA A Y G +A+IRDETKL++V
Sbjct:    4 VTGDWNPLGQVFYRKQEIYSMGW---RDIDLDKFVVAAAPYGGPIALIRDETKLVRV 57
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BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Match: A0A7J6JL75_COLFN (Probable vacuolar protein sorting-associated protein 16 homolog n=10 Tax=Colletotrichum TaxID=5455 RepID=A0A7J6JL75_COLFN)

HSP 1 Score: 49.3 bits (116), Expect = 3.370e-5
Identity = 25/53 (47.17%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    7 ADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIRDETKL 165
            + GW ++G+  YRKI LY   +  D+D  L ++LVA A Y+GA+A++RD+TKL
Sbjct:    7 SAGWENVGDKWYRKIQLYTEVF--DQDLDLDNHLVAGAPYAGALALLRDDTKL 57
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BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Match: A0A8J9Z1U9_BRALA (VPS16 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9Z1U9_BRALA)

HSP 1 Score: 49.3 bits (116), Expect = 3.410e-5
Identity = 25/57 (43.86%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:    4 LADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIRDETKLLKV 174
            +   W  LG V YRK  +Y++ W    D  L   +VA A Y G +A+IRDETKL++V
Sbjct:    4 VTGDWNPLGQVFYRKQEIYSMGW---RDIDLDKFVVAAAPYGGPIALIRDETKLVRV 57
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BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Match: A0A1J7JUQ5_9PEZI (Probable vacuolar protein sorting-associated protein 16 homolog n=1 Tax=Coniochaeta ligniaria NRRL 30616 TaxID=1408157 RepID=A0A1J7JUQ5_9PEZI)

HSP 1 Score: 48.9 bits (115), Expect = 4.610e-5
Identity = 26/54 (48.15%), Postives = 34/54 (62.96%), Query Frame = 1 
Query:    7 ADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIRDETKLL 168
             DGW  +G   YRKI LY   +  DED  L + +VA A Y+GA+A+ RDE KL+
Sbjct:    7 TDGWEQVGERFYRKIALYTAIF--DEDLDLDNYIVAGAPYAGAIALYRDENKLV 58
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BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Match: A0A4U6X8F9_9PEZI (Probable vacuolar protein sorting-associated protein 16 homolog n=17 Tax=Colletotrichum TaxID=5455 RepID=A0A4U6X8F9_9PEZI)

HSP 1 Score: 48.9 bits (115), Expect = 4.610e-5
Identity = 23/53 (43.40%), Postives = 37/53 (69.81%), Query Frame = 1 
Query:    7 ADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIRDETKL 165
            A GW ++G+  YRK+ LY   +  D+D  L +++VA A Y GA+A++RD+TK+
Sbjct:    8 AAGWENVGDKWYRKVQLYTEVF--DQDLDLDNHIVAGAPYGGAIALLRDDTKI 58
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BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Match: A0A433SPT9_ELYCH (Vacuolar protein sorting-associated protein 16 homolog n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433SPT9_ELYCH)

HSP 1 Score: 48.5 bits (114), Expect = 6.300e-5
Identity = 23/60 (38.33%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:    1 MLADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIRDETKLLKVLS 180
            M    W  LG+V YRK  LY ++W    D  L  + VA + Y G +A+++DE+KL +V++
Sbjct:    1 MATADWNPLGDVYYRKCELYAMEWCGLVD--LAKHSVATSTYGGPIALMKDESKLSRVVT 58
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BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Match: A0A5N5MUG9_9PEZI (Probable vacuolar protein sorting-associated protein 16 homolog n=2 Tax=Coniochaeta sp. 2T2.1 TaxID=1571157 RepID=A0A5N5MUG9_9PEZI)

HSP 1 Score: 48.1 bits (113), Expect = 8.630e-5
Identity = 25/54 (46.30%), Postives = 35/54 (64.81%), Query Frame = 1 
Query:    7 ADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIRDETKLL 168
             +GW  +G   YRKI LY   +  DED  L + +VA A Y+GA+A+ RDE+KL+
Sbjct:    7 TEGWEQVGERFYRKISLYTAIF--DEDLDLDNYIVAGAPYAGAIALYRDESKLV 58
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110818.889.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FS69_ECTSI1.600e-2175.86Vps16_N domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6P4XUS8_BRABE1.790e-547.37Vacuolar protein sorting-associated protein 16 hom... [more]
L2G314_COLFN3.340e-547.17Vacuolar protein sorting vps16 n=1 Tax=Colletotric... [more]
C3ZIW0_BRAFL3.360e-543.86Vacuolar protein sorting-associated protein 16 hom... [more]
A0A7J6JL75_COLFN3.370e-547.17Probable vacuolar protein sorting-associated prote... [more]
A0A8J9Z1U9_BRALA3.410e-543.86VPS16 protein n=1 Tax=Branchiostoma lanceolatum Ta... [more]
A0A1J7JUQ5_9PEZI4.610e-548.15Probable vacuolar protein sorting-associated prote... [more]
A0A4U6X8F9_9PEZI4.610e-543.40Probable vacuolar protein sorting-associated prote... [more]
A0A433SPT9_ELYCH6.300e-538.33Vacuolar protein sorting-associated protein 16 hom... [more]
A0A5N5MUG9_9PEZI8.630e-546.30Probable vacuolar protein sorting-associated prote... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110818contigH-elongata_contig110818:665..853 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue7.9e-17
Seed eggNOG ortholog2880.D7FS69
KEGG koko:K20180
KEGG Pathwayko04138,map04138
GOsGO:0000323,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0006810,GO:0006886,GO:0007275,GO:0008092,GO:0008104,GO:0008150,GO:0009790,GO:0009792,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0030897,GO:0031090,GO:0031338,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035295,GO:0035542,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048565,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0055123,GO:0060627,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:0099023
EggNOG free text desc.regulation of vacuole fusion, non-autophagic
EggNOG OGsKOG2280@1,KOG2280@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.144228-CDS-H-elongata_contig110818:664..8531622929634.144228-CDS-H-elongata_contig110818:664..853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110818 665..853 -
1691679099.6899748-CDS-H-elongata_contig110818:664..8531691679099.6899748-CDS-H-elongata_contig110818:664..853Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110818 665..853 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110818.889.1prot_H-elongata_contig110818.889.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110818 665..853 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110818.889.1

>prot_H-elongata_contig110818.889.1 ID=prot_H-elongata_contig110818.889.1|Name=mRNA_H-elongata_contig110818.889.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MLADGWISLGNVQYRKIHLYNLDWANDEDRCLGHNLVAVAKYSGAVAMIR
DETKLLKVLSMS*
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mRNA from alignment at H-elongata_contig110818:665..853-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110818.889.1 ID=mRNA_H-elongata_contig110818.889.1|Name=mRNA_H-elongata_contig110818.889.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig110818:665..853- (Himanthalia elongata Himel1 dioecious)
ATGTTGGCGGACGGCTGGATCAGTCTGGGCAATGTCCAGTACCGCAAGAT
CCACCTGTATAATCTGGATTGGGCAAACGACGAGGATCGGTGCCTTGGCC
ACAACTTGGTGGCGGTGGCTAAGTACAGTGGAGCGGTGGCCATGATTCGC
GACGAAACCAAGCTCTTGAAGGTGTTGTCCATGTCATAA
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Coding sequence (CDS) from alignment at H-elongata_contig110818:665..853-

>mRNA_H-elongata_contig110818.889.1 ID=mRNA_H-elongata_contig110818.889.1|Name=mRNA_H-elongata_contig110818.889.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig110818:665..853- (Himanthalia elongata Himel1 dioecious)
ATGTTGGCGGACGGCTGGATCAGTCTGGGCAATGTCCAGTACCGCAAGAT
CCACCTGTATAATCTGGATTGGGCAAACGACGAGGATCGGTGCCTTGGCC
ACAACTTGGTGGCGGTGGCTAAGTACAGTGGAGCGGTGGCCATGATTCGC
GACGAAACCAAGCTCTTGAAGGTGTTGTCCATGTCATAAATGTTGGCGGA
CGGCTGGATCAGTCTGGGCAATGTCCAGTACCGCAAGATCCACCTGTATA
ATCTGGATTGGGCAAACGACGAGGATCGGTGCCTTGGCCACAACTTGGTG
GCGGTGGCTAAGTACAGTGGAGCGGTGGCCATGATTCGCGACGAAACCAA
GCTCTTGAAGGTGTTGTCCATGTCATAA
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