mRNA_H-elongata_contig110774.888.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110774.888.1
Unique NamemRNA_H-elongata_contig110774.888.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110774.888.1 vs. uniprot
Match: D8LJ52_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ52_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 5.770e-73
Identity = 128/156 (82.05%), Postives = 146/156 (93.59%), Query Frame = 1 
Query:    1 QSVTNLLTSAALFRNMDLALCLNVFGCLACFQGWHRAREERRRTRHGVTYPKVILEWEYIMLCAYVKVLDLLVGLWLXXXXXXXXXEDLDYSERHSVRMLLLSITTVQTLTDIWSVFLGITVALLVSQYLLRKERMSDAAKQAFGEG--GDGDVEV 462
            +S+T+LL SAALFRNMDLALCLNVFGCLACFQGWH+AREERRR RHGVTYPKV+LEW+YIMLC YVK+ D+LVGLWLXXXXXXXXXED DYSERHS+RMLL++ITTVQTLTD+WSVFLGITV+LLVSQYLLRKE+ +DAA+ AFG+G  GD DVE+
Sbjct:  713 KSLTDLLVSAALFRNMDLALCLNVFGCLACFQGWHQAREERRRARHGVTYPKVVLEWDYIMLCGYVKIFDILVGLWLXXXXXXXXXEDRDYSERHSIRMLLVAITTVQTLTDVWSVFLGITVSLLVSQYLLRKEKSADAARNAFGDGQGGDKDVEI 868
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BLAST of mRNA_H-elongata_contig110774.888.1 vs. uniprot
Match: A0A6H5KXN3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN3_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 2.590e-59
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 1 
Query:    4 SVTNLLTSAALFRNMDLALCLNVFGCLACFQGWHRAREERRRTRHGVTYPKVILEWEYIMLCAYVKVLDLLVGLWLXXXXXXXXXEDLDYSERHSVRMLLLSITTVQTLTDIW 342
            S+T LL SAALFRNMDLALCLNVFGCLACFQGWH+AREERRR RHGVTYPKVILEW+YIMLC YVK+ DLLVGLWLXXXXXXXXXED DYSERHS+RMLL++ITTVQTLTD+W
Sbjct:   73 SLTELLVSAALFRNMDLALCLNVFGCLACFQGWHQAREERRRARHGVTYPKVILEWDYIMLCGYVKIFDLLVGLWLXXXXXXXXXEDRDYSERHSIRMLLVAITTVQTLTDVW 185
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BLAST of mRNA_H-elongata_contig110774.888.1 vs. uniprot
Match: A0A835YPD1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD1_9STRA)

HSP 1 Score: 138 bits (347), Expect = 8.960e-35
Identity = 66/130 (50.77%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:   25 SAALFRNMDLALCLNVFGCLACFQGWHRAREERRRTRHGVTYPKVILEWEYIMLCAYVKVLDLLVGLWLXXXXXXXXXEDLDYSERHSVRMLLLSITTVQTLTDIWSVFLGITVALLVSQYLLRKERMSD 414
            + ALF +MDLAL L VFGC+ C + WH  RE RR  +HG   PKV+L+WEY+MLC  +K+LDLL G+W+          + +YSER +V+ +L  I  VQ +TDIWSVFLG  + LLVSQYLLR+ +  +
Sbjct:  571 TGALFSHMDLALSLEVFGCMVCARKWHEMREARRTQKHGTHVPKVVLDWEYVMLCVKLKLLDLLFGVWVWAGIGWSFSPEREYSERWNVKTMLSWIVFVQFMTDIWSVFLGAVLCLLVSQYLLRRAKRKE 700
[Close]
BLAST of mRNA_H-elongata_contig110774.888.1 vs. uniprot
Match: A0A6H5KY58_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY58_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 2.740e-7
Identity = 29/40 (72.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:  343 SVFLGITVALLVSQYLLRKERMSDAAKQAFGEGGDGDVEV 462
            SVFLGITV+LLVSQYLLRKE+ +DAA+ AFG+G  GD +V
Sbjct:  414 SVFLGITVSLLVSQYLLRKEKSADAARNAFGDGQGGDKDV 453
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110774.888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LJ52_ECTSI5.770e-7382.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXN3_9PHAE2.590e-5987.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YPD1_9STRA8.960e-3550.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KY58_9PHAE2.740e-772.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110774contigH-elongata_contig110774:102..1645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_004790.1
Exons3
Model size480
Cds size480
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110774.888.1prot_H-elongata_contig110774.888.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110774 102..1645 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.0769157-CDS-H-elongata_contig110774:101..2401622929634.0769157-CDS-H-elongata_contig110774:101..240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110774 102..240 -
1691679099.660702-CDS-H-elongata_contig110774:101..2401691679099.660702-CDS-H-elongata_contig110774:101..240Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110774 102..240 -
1622929634.0945308-CDS-H-elongata_contig110774:644..8291622929634.0945308-CDS-H-elongata_contig110774:644..829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110774 645..829 -
1691679099.6700058-CDS-H-elongata_contig110774:644..8291691679099.6700058-CDS-H-elongata_contig110774:644..829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110774 645..829 -
1622929634.1060958-CDS-H-elongata_contig110774:1489..16451622929634.1060958-CDS-H-elongata_contig110774:1489..1645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110774 1490..1645 -
1691679099.6793556-CDS-H-elongata_contig110774:1489..16451691679099.6793556-CDS-H-elongata_contig110774:1489..1645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110774 1490..1645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110774.888.1

>prot_H-elongata_contig110774.888.1 ID=prot_H-elongata_contig110774.888.1|Name=mRNA_H-elongata_contig110774.888.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
QSVTNLLTSAALFRNMDLALCLNVFGCLACFQGWHRAREERRRTRHGVTY
PKVILEWEYIMLCAYVKVLDLLVGLWLWIGLGWSWSEDLDYSERHSVRML
LLSITTVQTLTDIWSVFLGITVALLVSQYLLRKERMSDAAKQAFGEGGDG
DVEVGTLYF*
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mRNA from alignment at H-elongata_contig110774:102..1645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110774.888.1 ID=mRNA_H-elongata_contig110774.888.1|Name=mRNA_H-elongata_contig110774.888.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1544bp|location=Sequence derived from alignment at H-elongata_contig110774:102..1645- (Himanthalia elongata Himel1 dioecious)
CAGAGTGTTACCAACCTTCTGACCTCGGCGGCGCTCTTCCGCAACATGGA
CCTGGCGCTCTGCTTAAATGTTTTCGGGTGCCTCGCGTGCTTTCAAGGCT
GGCACAGGGCGAGGGAGGAGAGAAGACGCACGCGACATGGCGTCACCTAT
CCGAAGGTCAGATCACCCTTACGATAACCACGAGCTCCGCGACAATCGCG
AGCGCCGAGGTCGCCGTAAGACCCACCAACACGTCTTTTCTTTACGCCTA
TGTCTTCAGAAGCCTGCTTGCATTATTTTTTTGTAAACATATATATAAAC
TACACCAAACCCTCCGAACATCCGCACTACTGTATATCCTATATACTTCA
TTACACCACGAACAGTCGAGTTATGGGGACTATGACCAACTATCATCGTC
AGGTTCAAGTGGGTACATTACTACCTATTAGCACAACATATGAACAAGAA
AGTTGGTCACAATACACGTAGTGTAGTGGTTCAAGATAAGGAAAGGAGGA
AGAAAGTAATTAAACATATATCGACAGGACGTTTATCCCGATCTGTCCCT
AGCCCCACTCCCCCCCCGAGTATCCTTATCTACCAGTTTATCCGGAAGTT
TGTATATACGAAAACATTATGAAACGGCGGCAAAGCTAGGCCCGCCGTGG
CTGCAACTCCTCGCTCCTCCCTCCTTCTTTATACCAAAACCGACATCTCA
GTACACGGCTTCTATTACCACCCGTTCTGAGGGATATCACCTTGGGCAAG
CAATGGACATATTTCTTCCGATCCGAGAGACAAACACAATTCATTCCCCT
TCTCTTTCATCCTCAGGTTATTCTCGAGTGGGAGTACATCATGCTGTGCG
CCTACGTCAAGGTGTTGGATCTGCTCGTTGGCCTTTGGTTGTGGATTGGT
CTTGGATGGTCCTGGAGCGAGGACCTCGACTATTCCGAGCGACATAGCGT
TCGTATGTTACTGCTGTCGATCACCACGGTCCAGACCCTCACCGACATCT
GGTAAGCACGTGTCCCCCCCGTTCCCCCCACACACATACATGCATCTAAA
TGTTTATGATAAGAATGCAGCCATGCAACTTTGAGCGCGATCGTCTCTGT
CTCCTTCTCTCCTTCTGTGACCATACGGATAAACATAATAAGTGACGTGG
CAACGAACATCGCCTCCTTTTGAATTTCCAATGACGGCCAGTGACGTTTT
TTTTTTAAACGCTGGGAAGAGATGAGTGACGTTATGCCCAGTTCTCAGTC
TCTCGCTGCAACACCGGCCGGGGGTACTATTAATAGTAGTGGGCGACGAA
CGCCGCGCTTTTTACCCCCGGCACGGTAACGACGGCATCGCACACATGAA
CAAGGCCAACACACCGCGTGCACCGTTCATCTCCCCGCACTGCTTTGCCC
CGTAGGTCTGTCTTTCTCGGCATCACGGTGGCCCTGCTCGTGTCTCAGTA
CCTTTTGAGGAAAGAAAGAATGTCCGATGCCGCTAAGCAGGCTTTCGGCG
AAGGAGGCGACGGAGACGTCGAGGTAGGGACACTTTATTTCTGA
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Coding sequence (CDS) from alignment at H-elongata_contig110774:102..1645-

>mRNA_H-elongata_contig110774.888.1 ID=mRNA_H-elongata_contig110774.888.1|Name=mRNA_H-elongata_contig110774.888.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=960bp|location=Sequence derived from alignment at H-elongata_contig110774:102..1645- (Himanthalia elongata Himel1 dioecious)
CAGAGTGTTACCAACCTTCTGACCTCGGCGGCGCTCTTCCGCAACATGGA
CCTGGCGCTCTGCTTAAATGTTTTCGGGTGCCTCGCGTGCTTTCAAGGCT
GGCACAGGGCGAGGGAGGAGAGAAGACGCACGCGACATGGCGTCACCTAT
CCGAAGCAGAGTGTTACCAACCTTCTGACCTCGGCGGCGCTCTTCCGCAA
CATGGACCTGGCGCTCTGCTTAAATGTTTTCGGGTGCCTCGCGTGCTTTC
AAGGCTGGCACAGGGCGAGGGAGGAGAGAAGACGCACGCGACATGGCGTC
ACCTATCCGAAGGTTATTCTCGAGTGGGAGTACATCATGCTGTGCGCCTA
CGTCAAGGTGTTGGATCTGCTCGTTGGCCTTTGGTTGTGGATTGGTCTTG
GATGGTCCTGGAGCGAGGACCTCGACTATTCCGAGCGACATAGCGTTCGT
ATGTTACTGCTGTCGATCACCACGGTCCAGACCCTCACCGACATCTGGTT
ATTCTCGAGTGGGAGTACATCATGCTGTGCGCCTACGTCAAGGTGTTGGA
TCTGCTCGTTGGCCTTTGGTTGTGGATTGGTCTTGGATGGTCCTGGAGCG
AGGACCTCGACTATTCCGAGCGACATAGCGTTCGTATGTTACTGCTGTCG
ATCACCACGGTCCAGACCCTCACCGACATCTGGTCTGTCTTTCTCGGCAT
CACGGTGGCCCTGCTCGTGTCTCAGTACCTTTTGAGGAAAGAAAGAATGT
CCGATGCCGCTAAGCAGGCTTTCGGCGAAGGAGGCGACGGAGACGTCGAG
GTAGGGACACTTTATTTCTGAGTCTGTCTTTCTCGGCATCACGGTGGCCC
TGCTCGTGTCTCAGTACCTTTTGAGGAAAGAAAGAATGTCCGATGCCGCT
AAGCAGGCTTTCGGCGAAGGAGGCGACGGAGACGTCGAGGTAGGGACACT
TTATTTCTGA
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