mRNA_H-elongata_contig110761.887.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110761.887.1
Unique NamemRNA_H-elongata_contig110761.887.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110761.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110761contigH-elongata_contig110761:2..553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.0057235-CDS-H-elongata_contig110761:1..3041622929634.0057235-CDS-H-elongata_contig110761:1..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110761 2..304 +
1691679099.6397667-CDS-H-elongata_contig110761:1..3041691679099.6397667-CDS-H-elongata_contig110761:1..304Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110761 2..304 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929634.019159-UTR-H-elongata_contig110761:304..5531622929634.019159-UTR-H-elongata_contig110761:304..553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110761 305..553 +
1691679099.6502392-UTR-H-elongata_contig110761:304..5531691679099.6502392-UTR-H-elongata_contig110761:304..553Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110761 305..553 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110761.887.1prot_H-elongata_contig110761.887.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110761 2..304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110761.887.1

>prot_H-elongata_contig110761.887.1 ID=prot_H-elongata_contig110761.887.1|Name=mRNA_H-elongata_contig110761.887.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
LIISLQAGGNKIRLIFTLLYNTSYLKTARKSFFCCCCSRRQRRLTLPCLV
LYRKDLLYKVPEPPRRLICFTFYPGSNKATTLLSPSINCMYVNLLPTRCP
*
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mRNA from alignment at H-elongata_contig110761:2..553+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110761.887.1 ID=mRNA_H-elongata_contig110761.887.1|Name=mRNA_H-elongata_contig110761.887.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=552bp|location=Sequence derived from alignment at H-elongata_contig110761:2..553+ (Himanthalia elongata Himel1 dioecious)
TTGATCATTTCTCTACAAGCAGGAGGCAACAAAATCCGGTTGATATTTAC
TCTGCTATACAACACATCATATCTAAAAACGGCAAGAAAGAGCTTCTTCT
GCTGCTGCTGCTCTAGGCGACAAAGGCGGCTTACCTTGCCTTGCCTTGTT
TTATATCGCAAAGATCTGCTTTATAAAGTCCCTGAACCCCCAAGACGTTT
GATCTGCTTTACGTTTTACCCAGGCTCCAATAAAGCCACGACCTTATTAT
CACCCTCAATAAACTGCATGTACGTAAACCTCCTCCCGACACGCTGTCCA
TGACACATTCGTATTACTTTCGAGGAAGGAAATTAATAAATAAATAATGC
CACAATTATTGACATCATTAGAGAGTGAAATCCACATCAAAGAAACATTG
GCGGCACCGTCGATGTCATCGATCCCATCCATCACATCCATCTTCAGTTT
ACATTATATTAAATCAAGTCTGACGATCGTGGTGGGCAACTCTACCAAAC
CCTCTTCGGCCAAAGCCAAGGGCCACCAGCCCGTTATCGCACCCCACCCC
CC
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Coding sequence (CDS) from alignment at H-elongata_contig110761:2..553+

>mRNA_H-elongata_contig110761.887.1 ID=mRNA_H-elongata_contig110761.887.1|Name=mRNA_H-elongata_contig110761.887.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig110761:2..553+ (Himanthalia elongata Himel1 dioecious)
TTGATCATTTCTCTACAAGCAGGAGGCAACAAAATCCGGTTGATATTTAC
TCTGCTATACAACACATCATATCTAAAAACGGCAAGAAAGAGCTTCTTCT
GCTGCTGCTGCTCTAGGCGACAAAGGCGGCTTACCTTGCCTTGCCTTGTT
TTATATCGCAAAGATCTGCTTTATAAAGTCCCTGAACCCCCAAGACGTTT
GATCTGCTTTACGTTTTACCCAGGCTCCAATAAAGCCACGACCTTATTAT
CACCCTCAATAAACTGCATGTACGTAAACCTCCTCCCGACACGCTGTCCA
TGATTGATCATTTCTCTACAAGCAGGAGGCAACAAAATCCGGTTGATATT
TACTCTGCTATACAACACATCATATCTAAAAACGGCAAGAAAGAGCTTCT
TCTGCTGCTGCTGCTCTAGGCGACAAAGGCGGCTTACCTTGCCTTGCCTT
GTTTTATATCGCAAAGATCTGCTTTATAAAGTCCCTGAACCCCCAAGACG
TTTGATCTGCTTTACGTTTTACCCAGGCTCCAATAAAGCCACGACCTTAT
TATCACCCTCAATAAACTGCATGTACGTAAACCTCCTCCCGACACGCTGT
CCATGA
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