mRNA_H-elongata_contig110703.885.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110703.885.1
Unique NamemRNA_H-elongata_contig110703.885.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Match: A0A6H5KDG3_9PHAE (CTLH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG3_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 6.710e-38
Identity = 63/74 (85.14%), Postives = 71/74 (95.95%), Query Frame = 1 
Query:    7 KEYLELIERQEFQKAFAFLNRRLKPMEAIAASTPNEFVNLCYLLTCKSVADASHFRTWEGVLGGRERLADELAR 228
            +EYLELIERQE+Q+AFAFLNRRLKPMEA AASTPNEF+NLCYLLTCKSV+DA HFR+W GVLGGRE+LA+ELAR
Sbjct:  153 QEYLELIERQEYQRAFAFLNRRLKPMEATAASTPNEFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEELAR 226
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BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Match: D7G553_ECTSI (WD40 repeat-containing protein SMU1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G553_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.630e-36
Identity = 62/74 (83.78%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    7 KEYLELIERQEFQKAFAFLNRRLKPMEAIAASTPNEFVNLCYLLTCKSVADASHFRTWEGVLGGRERLADELAR 228
            +EYLELIERQE+Q+AF FLNRRLKPMEA AASTPNEF+NLCYLLTCKSV+DA HFR+W GVLGGRE+LA+ELAR
Sbjct:  152 QEYLELIERQEYQRAFVFLNRRLKPMEATAASTPNEFLNLCYLLTCKSVSDAGHFRSWGGVLGGREKLAEELAR 225
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BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Match: A0A835YTG5_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG5_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.050e-31
Identity = 57/74 (77.03%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    7 KEYLELIERQEFQKAFAFLNRRLKPMEAIAASTPNEFVNLCYLLTCKSVADASHFRTWEGVLGGRERLADELAR 228
            +EY+ELIE+QE+QKAFA+LNRRLKPMEA AAS P EF NLCYLLTCKSVAD+ HF  WEGV+ GRE+L+DELAR
Sbjct:  110 QEYMELIEKQEYQKAFAYLNRRLKPMEATAASNPTEFQNLCYLLTCKSVADSPHFMGWEGVMAGREKLSDELAR 183
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BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Match: A0A2P4Y659_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y659_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.410e-22
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 CFKEYLELIERQEFQKAFAFLNRRLKPMEAIAASTPN---EFVNLCYLLTCKSVADASHFRTWEGVLGGRERLADEL 222
            C +EYLELI+RQE+QKAF FL   LKP+E +AA+T +   EF  LCYLLTCK+V ++  FR WEGV+  RE+L ++L
Sbjct:   31 CKQEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKELCYLLTCKAVGESDAFRDWEGVVRSREKLVEQL 107
[Close]
BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Match: M4BFV4_HYAAE (WD40 repeat-containing protein SMU1 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BFV4_HYAAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.270e-21
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 CFKEYLELIERQEFQKAFAFLNRRLKPMEAIAASTPN---EFVNLCYLLTCKSVADASHFRTWEGVLGGRERLADEL 222
            C +EYLELI+RQE+QKAF FL   LKP+E +A +T +   EF  LCYLLTCK+V +++ FR WEGV+G RE+L ++L
Sbjct:  125 CKQEYLELIDRQEYQKAFTFLTTHLKPLEKVAVATSSSRHEFKELCYLLTCKAVGESNAFRDWEGVVGSREKLVEQL 201
[Close]
BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Match: A0A2P4X6J9_9STRA (CTLH domain-containing protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6J9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.570e-21
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 CFKEYLELIERQEFQKAFAFLNRRLKPMEAIAASTPN---EFVNLCYLLTCKSVADASHFRTWEGVLGGRERLADEL 222
            C +EYLELI+RQE+QKAF FL   LKP+E +AA+T +   EF  LCYLLTCK+V ++  FR WEGV+  RE+L ++L
Sbjct:  128 CKQEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKELCYLLTCKAVGESDAFRDWEGVVRSREKLVEQL 204
[Close]
BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Match: H3GZS2_PHYRM (WD40 repeat-containing protein SMU1 n=19 Tax=Phytophthora TaxID=4783 RepID=H3GZS2_PHYRM)

HSP 1 Score: 95.1 bits (235), Expect = 4.410e-21
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 CFKEYLELIERQEFQKAFAFLNRRLKPMEAIAASTPN---EFVNLCYLLTCKSVADASHFRTWEGVLGGRERLADEL 222
            C +EYLELI+RQE+QKAF FL   LKP+E +AA+T +   EF  LCYLLTCK+V ++  FR WEGV+  RE+L ++L
Sbjct:  130 CKQEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKELCYLLTCKAVGESDAFRNWEGVVRSREKLVEQL 206
[Close]
BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Match: A0A3F2RT78_9STRA (WD40 repeat-containing protein SMU1 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RT78_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 4.450e-21
Identity = 44/77 (57.14%), Postives = 59/77 (76.62%), Query Frame = 1 
Query:    1 CFKEYLELIERQEFQKAFAFLNRRLKPMEAIAASTPN---EFVNLCYLLTCKSVADASHFRTWEGVLGGRERLADEL 222
            C +EYLELI+RQE+QKAF FL   LKP+E +AA+T +   EF +LCYLLTCK+V ++  FR WEGV+  RE+L ++L
Sbjct:  470 CKQEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKDLCYLLTCKAVGESDAFRDWEGVVRSREKLVEQL 546
[Close]
BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Match: A0A5D6Y3W2_9STRA (WD40 repeat-containing protein SMU1 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3W2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 5.990e-21
Identity = 45/75 (60.00%), Postives = 57/75 (76.00%), Query Frame = 1 
Query:    1 CFKEYLELIERQEFQKAFAFLNRRLKPMEAIAA-STPNEFVNLCYLLTCKSVADASHFRTWEGVLGGRERLADEL 222
            C +EYLELI+RQE+QKAF FL   LKP+E I+A ++  EF  LCYLLTCKSVA+   FR WEGV+  RE+L ++L
Sbjct:  116 CKQEYLELIDRQEYQKAFTFLTTHLKPLEKISALASRGEFKELCYLLTCKSVAEVDAFRDWEGVVRSREKLVEQL 190
[Close]
BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Match: D0NHZ8_PHYIT (WD40 repeat-containing protein SMU1 n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NHZ8_PHYIT)

HSP 1 Score: 94.7 bits (234), Expect = 6.090e-21
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 CFKEYLELIERQEFQKAFAFLNRRLKPMEAIAASTPN---EFVNLCYLLTCKSVADASHFRTWEGVLGGRERLADEL 222
            C +EYLELI+RQE+QKAF FL   LKP+E +AA+T +   EF  LCYLLTCK+V ++  FR WEGV+  RE+L ++L
Sbjct:  550 CKQEYLELIDRQEYQKAFTFLTTHLKPLEKVAAATSSSRHEFKELCYLLTCKAVGESDAFRDWEGVVRSREKLVEQL 626
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110703.885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDG3_9PHAE6.710e-3885.14CTLH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G553_ECTSI3.630e-3683.78WD40 repeat-containing protein SMU1 n=1 Tax=Ectoca... [more]
A0A835YTG5_9STRA1.050e-3177.03WD40 repeat-containing protein SMU1 n=1 Tax=Tribon... [more]
A0A2P4Y659_9STRA5.410e-2257.14Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
M4BFV4_HYAAE1.270e-2157.14WD40 repeat-containing protein SMU1 n=1 Tax=Hyalop... [more]
A0A2P4X6J9_9STRA1.570e-2157.14CTLH domain-containing protein (Fragment) n=1 Tax=... [more]
H3GZS2_PHYRM4.410e-2157.14WD40 repeat-containing protein SMU1 n=19 Tax=Phyto... [more]
A0A3F2RT78_9STRA4.450e-2157.14WD40 repeat-containing protein SMU1 n=3 Tax=Phytop... [more]
A0A5D6Y3W2_9STRA5.990e-2160.00WD40 repeat-containing protein SMU1 n=1 Tax=Pythiu... [more]
D0NHZ8_PHYIT6.090e-2157.14WD40 repeat-containing protein SMU1 n=1 Tax=Phytop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110703contigH-elongata_contig110703:41..271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.4
Seed ortholog evalue2.2e-29
Seed eggNOG ortholog2880.D7G553
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.5825555-CDS-H-elongata_contig110703:40..2711622929633.5825555-CDS-H-elongata_contig110703:40..271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110703 41..271 -
1691679099.5250325-CDS-H-elongata_contig110703:40..2711691679099.5250325-CDS-H-elongata_contig110703:40..271Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110703 41..271 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110703.885.1prot_H-elongata_contig110703.885.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110703 41..271 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110703.885.1

>prot_H-elongata_contig110703.885.1 ID=prot_H-elongata_contig110703.885.1|Name=mRNA_H-elongata_contig110703.885.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
CFKEYLELIERQEFQKAFAFLNRRLKPMEAIAASTPNEFVNLCYLLTCKS
VADASHFRTWEGVLGGRERLADELAR*
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mRNA from alignment at H-elongata_contig110703:41..271-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110703.885.1 ID=mRNA_H-elongata_contig110703.885.1|Name=mRNA_H-elongata_contig110703.885.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig110703:41..271- (Himanthalia elongata Himel1 dioecious)
TGTTTCAAGGAATACTTAGAGCTGATCGAGCGACAGGAGTTCCAGAAGGC
GTTTGCGTTCCTGAATCGTCGCCTCAAGCCCATGGAAGCCATCGCGGCGT
CCACCCCAAACGAGTTCGTGAACCTGTGCTACCTCCTGACGTGCAAGTCT
GTCGCTGACGCCTCGCACTTTAGAACGTGGGAGGGTGTGCTTGGCGGCCG
TGAGAGACTAGCGGATGAGCTCGCCAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig110703:41..271-

>mRNA_H-elongata_contig110703.885.1 ID=mRNA_H-elongata_contig110703.885.1|Name=mRNA_H-elongata_contig110703.885.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig110703:41..271- (Himanthalia elongata Himel1 dioecious)
TGTTTCAAGGAATACTTAGAGCTGATCGAGCGACAGGAGTTCCAGAAGGC
GTTTGCGTTCCTGAATCGTCGCCTCAAGCCCATGGAAGCCATCGCGGCGT
CCACCCCAAACGAGTTCGTGAACCTGTGCTACCTCCTGACGTGCAAGTCT
GTCGCTGACGCCTCGCACTTTAGAACGTGGGAGGGTGTGCTTGGCGGCCG
TGAGAGACTAGCGGATGAGCTCGCCAGGTGATGTTTCAAGGAATACTTAG
AGCTGATCGAGCGACAGGAGTTCCAGAAGGCGTTTGCGTTCCTGAATCGT
CGCCTCAAGCCCATGGAAGCCATCGCGGCGTCCACCCCAAACGAGTTCGT
GAACCTGTGCTACCTCCTGACGTGCAAGTCTGTCGCTGACGCCTCGCACT
TTAGAACGTGGGAGGGTGTGCTTGGCGGCCGTGAGAGACTAGCGGATGAG
CTCGCCAGGTGA
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