mRNA_H-elongata_contig110678.882.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110678.882.1
Unique NamemRNA_H-elongata_contig110678.882.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Match: D7FT29_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT29_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.140e-54
Identity = 82/100 (82.00%), Postives = 93/100 (93.00%), Query Frame = 1
Query:    1 PCRKYTPQLAALYSRAKAQHKAFEVVFVSLDGDEASMERYHAGMPWLAVPFDDPFREEFASARGVNSIPRLIVTSRRGEELSSNAVGMTWEQLVAWENQG 300
            PCRKYTPQLAALY+RAKAQHKAFEVVFVSLDGDE SM+RYHAGMPW AVP+D PFRE+FAS++GVNS+PRL+VT RRG+E++SNAVGMTWEQLV WE  G
Sbjct:  274 PCRKYTPQLAALYTRAKAQHKAFEVVFVSLDGDEESMDRYHAGMPWPAVPYDHPFREDFASSKGVNSVPRLVVTGRRGQEIASNAVGMTWEQLVTWEAHG 373          
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Match: A0A7S1EBY5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EBY5_HEMAN)

HSP 1 Score: 87.8 bits (216), Expect = 1.320e-19
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 PCRKYTPQLAALYSRAKAQHKAFEVVFVSLDGDEASMERYHAGMPWLAVPFDDPFREEFASARGVNSIPRLIVTSRRGEELSSNAVGMTW--EQLVAWE 291
            PC+++TPQLAA Y+RA+A  + FEVVFVS D D+ SM+ Y   MPW A+P+  P RE   +   V  IP+L V  R G+ +  +AV   +    L  WE
Sbjct:   80 PCKQFTPQLAAFYNRARAAGRPFEVVFVSCDRDQTSMDSYLGHMPWPAIPYGSPAREAALATLKVQGIPQLTVFGRDGKVVEQSAVQSVFAPNSLDRWE 178          
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Match: A0A7X7DHD3_9BACT (Redoxin family protein n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7X7DHD3_9BACT)

HSP 1 Score: 80.9 bits (198), Expect = 1.700e-16
Identity = 42/96 (43.75%), Postives = 58/96 (60.42%), Query Frame = 1
Query:    1 PCRKYTPQLAALYSRAKAQHKAFEVVFVSLDGDEASMERYHAG--MPWLAVPFDDPFREEFASARGVNSIPRLIVTSRRGEELSSNAVGMTWEQLV 282
            PCR +TP+L  +Y++ +A HK FEVV V+ D DE SM++Y     MPW+AVPF D   +       V+ IP+L+V    G+ LS+NA G    Q V
Sbjct:  135 PCRAFTPELVKVYNQLQADHKPFEVVLVTSDKDERSMDKYMKDYDMPWVAVPFGDKRIDLLKKKFSVSGIPKLVVIDDAGQILSANARGEVTAQGV 230          
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Match: A0A0C9S4V9_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_13661_1702 transcribed RNA sequence n=1 Tax=Wollemia nobilis TaxID=56998 RepID=A0A0C9S4V9_9SPER)

HSP 1 Score: 82.8 bits (203), Expect = 1.900e-16
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 1
Query:    1 PCRKYTPQLAALYSRAKAQHKAFEVVFVSLDGDEASMERYHAGMPWLAVPFDDPFREEFASARGVNSIPRLIVTSRRGEELSSNAVGM 264
            PCR++TP+LA +Y+  K + KAFE+VF+S D D+A+ E Y+  MPWLAVPF D   ++ +    V  IP LI+    G+ ++++   +
Sbjct:  220 PCRRFTPKLAQVYTELKQEKKAFEIVFLSSDRDQAAFEEYYTTMPWLAVPFGDKVEKDLSRYFYVEGIPTLIIIGPDGKTVTTDGTSI 307          
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Match: A0A813KHU8_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813KHU8_POLGL)

HSP 1 Score: 79.3 bits (194), Expect = 2.230e-15
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 PCRKYTPQLAALYSRAKAQHKAFEVVFVSLDGDEASMERYHAGMPWLAVPFDDPFREEFAS-ARGVNSIPRLIVTS-RRGEELSSNAVG 261
            PC+ YTPQL  +Y RA+A+ KAFEVVFVS D D+AS + Y   MPW AVP+ D  R++  + A  V  IP L++     G  L +NA G
Sbjct:   37 PCQAYTPQLKKVYERARAKGKAFEVVFVSSDRDDASFKEYFGSMPWHAVPYADRARQQVLNTAFQVRGIPSLVLLDGATGSLLDANARG 125          
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Match: A0A8J1TKT5_OWEFU (Nucleoredoxin n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TKT5_OWEFU)

HSP 1 Score: 79.3 bits (194), Expect = 3.530e-15
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query:    1 PCRKYTPQLAALYSRAKAQHKAFEVVFVSLDGDEASMERYHAGMPWLAVPFDDPFREEFASARGVNSIPRLIVTSRRGEELSSNAVG 261
            PC+ +TP LA  Y++ K Q K FE++F S D  + S + Y   MPWLA+P++DP + +      V  IP L+  +  GE ++ N  G
Sbjct:  222 PCKAFTPNLAKFYNKMKEQGKQFEIIFASSDRSQESFDEYFGTMPWLALPWNDPRKNQLTQTYSVEGIPCLVFLNENGETITKNGRG 308          
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Match: A0A813DNF3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DNF3_POLGL)

HSP 1 Score: 79.3 bits (194), Expect = 4.050e-15
Identity = 43/89 (48.31%), Postives = 56/89 (62.92%), Query Frame = 1
Query:    1 PCRKYTPQLAALYSRAKAQHKAFEVVFVSLDGDEASMERYHAGMPWLAVPFDDPFREEFAS-ARGVNSIPRLIVTS-RRGEELSSNAVG 261
            PC+ YTPQL  +Y RA+A+ KAFEVVFVS D D+AS + Y   MPW AVP+ D  R++  + A  V  IP L++     G  L +NA G
Sbjct:   37 PCQAYTPQLKKVYERARAKGKAFEVVFVSSDRDDASFKEYFGSMPWHAVPYADRARQQVLNTAFQVRGIPSLVLLDGATGSLLDANARG 125          
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Match: A0A7J7Q2W7_9CHLO (Thioredoxin-like-domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q2W7_9CHLO)

HSP 1 Score: 75.5 bits (184), Expect = 4.640e-15
Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1
Query:    1 PCRKYTPQLAALYSRAKAQHKAFEVVFVSLDGDEASMERYHAGMPWLAVPF-DDPFREEFASARGVNSIPRLIVTSRRGEELSSNA 255
            PCR +TP+LA  YS+ K   K FEVVFVS+D ++A  + Y   MPW+AVPF DD  R   +    V  IP L++ +     L  NA
Sbjct:   53 PCRAFTPKLANTYSKLKKDGKEFEVVFVSMDKNQAQFDDYFGSMPWMAVPFRDDQLRSVLSRKFKVQGIPHLVLLAPDSTVLCGNA 138          
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Match: A0A7S0GV44_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GV44_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 1.280e-14
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:    1 PCRKYTPQLAALYSRAKAQHKA-FEVVFVSLDGDEASMERYHAGMPWLAVPFDDPFREEFASARGVNSIPRL-IVTSRRGEELSSNAVG-MTWEQLVAWE 291
            PCR++TP LA  Y++ KA  K  FE+VFVSLD ++++ E Y   MPW A+P++ P R+  A    V  IP L +++S  G    +N VG +T E   +WE
Sbjct:  322 PCRQFTPMLADFYNQMKAAGKDNFEIVFVSLDREKSAFEEYLGTMPWPAIPYEGPLRQNLAQRFMVQGIPSLKVLSSVDGSVAVNNGVGALTPEVFESWE 421          
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Match: A0A5C7HY57_9ROSI (Thioredoxin domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HY57_9ROSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.410e-14
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 1
Query:    1 PCRKYTPQLAALYSRAKAQHKAFEVVFVSLDGDEASMERYHAGMPWLAVPFDD----PFREEFASARGVNSIPRLIVTSRRGEELSSNA 255
            PCR +TP+LA  Y   KA+H  FEV+FVS+D D+ S  +Y++ MPWLA+P+DD      R  F S R    IP L      G+ L++ A
Sbjct:  794 PCRAFTPKLAKTYHEIKAKHPDFEVIFVSVDNDQESFNKYYSEMPWLALPYDDRREASLRRTFKSKR----IPHLAAVGPNGKILTNEA 878          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110678.882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT29_ECTSI1.140e-5482.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1EBY5_HEMAN1.320e-1944.44Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7X7DHD3_9BACT1.700e-1643.75Redoxin family protein n=1 Tax=Lentisphaerae bacte... [more]
A0A0C9S4V9_9SPER1.900e-1640.91TSA: Wollemia nobilis Ref_Wollemi_Transcript_13661... [more]
A0A813KHU8_POLGL2.230e-1548.31Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A8J1TKT5_OWEFU3.530e-1537.93Nucleoredoxin n=1 Tax=Owenia fusiformis TaxID=6347... [more]
A0A813DNF3_POLGL4.050e-1548.31Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A7J7Q2W7_9CHLO4.640e-1544.19Thioredoxin-like-domain-containing protein n=1 Tax... [more]
A0A7S0GV44_9EUKA1.280e-1442.00Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A5C7HY57_9ROSI1.410e-1443.82Thioredoxin domain-containing protein n=1 Tax=Acer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110678contigH-elongata_contig110678:1567..1869 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue7.1e-44
Seed eggNOG ortholog2880.D7FT29
KEGG koko:K17609
EggNOG free text desc.cellular oxidant detoxification
EggNOG OGsKOG2501@1,KOG2501@2759
EC1.8.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.416721-CDS-H-elongata_contig110678:1566..18691622929633.416721-CDS-H-elongata_contig110678:1566..1869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110678 1567..1869 -
1691679099.4830816-CDS-H-elongata_contig110678:1566..18691691679099.4830816-CDS-H-elongata_contig110678:1566..1869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110678 1567..1869 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110678.882.1prot_H-elongata_contig110678.882.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110678 1567..1869 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110678.882.1

>prot_H-elongata_contig110678.882.1 ID=prot_H-elongata_contig110678.882.1|Name=mRNA_H-elongata_contig110678.882.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
PCRKYTPQLAALYSRAKAQHKAFEVVFVSLDGDEASMERYHAGMPWLAVP
FDDPFREEFASARGVNSIPRLIVTSRRGEELSSNAVGMTWEQLVAWENQG
*
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mRNA from alignment at H-elongata_contig110678:1567..1869-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110678.882.1 ID=mRNA_H-elongata_contig110678.882.1|Name=mRNA_H-elongata_contig110678.882.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=303bp|location=Sequence derived from alignment at H-elongata_contig110678:1567..1869- (Himanthalia elongata Himel1 dioecious)
CCGTGCCGCAAGTACACCCCGCAGCTCGCTGCGCTCTATAGCAGGGCGAA GGCACAGCATAAGGCGTTCGAGGTTGTGTTCGTCAGCCTCGACGGCGACG AGGCGTCCATGGAGAGGTATCACGCAGGCATGCCGTGGCTCGCGGTGCCG TTTGACGACCCTTTCCGGGAGGAGTTTGCGTCGGCCAGGGGCGTTAACTC CATTCCGCGACTAATCGTCACGAGTCGACGAGGCGAAGAACTCTCTAGCA ACGCCGTGGGAATGACGTGGGAACAGCTCGTTGCGTGGGAAAACCAGGGG TAA
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Coding sequence (CDS) from alignment at H-elongata_contig110678:1567..1869-

>mRNA_H-elongata_contig110678.882.1 ID=mRNA_H-elongata_contig110678.882.1|Name=mRNA_H-elongata_contig110678.882.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig110678:1567..1869- (Himanthalia elongata Himel1 dioecious)
CCGTGCCGCAAGTACACCCCGCAGCTCGCTGCGCTCTATAGCAGGGCGAA
GGCACAGCATAAGGCGTTCGAGGTTGTGTTCGTCAGCCTCGACGGCGACG
AGGCGTCCATGGAGAGGTATCACGCAGGCATGCCGTGGCTCGCGGTGCCG
TTTGACGACCCTTTCCGGGAGGAGTTTGCGTCGGCCAGGGGCGTTAACTC
CATTCCGCGACTAATCGTCACGAGTCGACGAGGCGAAGAACTCTCTAGCA
ACGCCGTGGGAATGACGTGGGAACAGCTCGTTGCGTGGGAAAACCAGGGG
TAACCGTGCCGCAAGTACACCCCGCAGCTCGCTGCGCTCTATAGCAGGGC
GAAGGCACAGCATAAGGCGTTCGAGGTTGTGTTCGTCAGCCTCGACGGCG
ACGAGGCGTCCATGGAGAGGTATCACGCAGGCATGCCGTGGCTCGCGGTG
CCGTTTGACGACCCTTTCCGGGAGGAGTTTGCGTCGGCCAGGGGCGTTAA
CTCCATTCCGCGACTAATCGTCACGAGTCGACGAGGCGAAGAACTCTCTA
GCAACGCCGTGGGAATGACGTGGGAACAGCTCGTTGCGTGGGAAAACCAG
GGGTAA
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