mRNA_H-elongata_contig110652.881.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110652.881.1
Unique NamemRNA_H-elongata_contig110652.881.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Match: D8LD71_ECTSI (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD71_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 3.780e-22
Identity = 40/49 (81.63%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:   13 ISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDHVEA 159
            +S   CGTSLPEPW+KA +FEDW+LDDPDGKPLETFRRVR+EIKDHVEA
Sbjct:  134 VSMCGCGTSLPEPWQKAGVFEDWQLDDPDGKPLETFRRVRAEIKDHVEA 182
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BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Match: A0A1Z4RNP1_9CHRO (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Chondrocystis sp. NIES-4102 TaxID=2005460 RepID=A0A1Z4RNP1_9CHRO)

HSP 1 Score: 74.3 bits (181), Expect = 1.070e-15
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 1 
Query:   13 ISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDHV 153
            IS   CGTSLP  W + ++FEDW+LDDPDG+PLETF RVR EIKD V
Sbjct:   77 ISMCGCGTSLPPEWVRQEVFEDWELDDPDGQPLETFHRVRDEIKDRV 123
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BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Match: A0A357A7M0_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=2 Tax=Cyanobacteria TaxID=1117 RepID=A0A357A7M0_9CYAN)

HSP 1 Score: 73.2 bits (178), Expect = 2.950e-15
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   13 ISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDHVEA 159
            IS   CG +LP+ W   ++FEDW+LDDPDG+PLETFRRVR EIK+ VE 
Sbjct:   77 ISLCGCGVNLPQDWVLQEIFEDWQLDDPDGQPLETFRRVRGEIKERVEG 125
[Close]
BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Match: A0A6P2A8S8_9CHRO (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Gloeocapsa sp. DLM2.Bin57 TaxID=2480214 RepID=A0A6P2A8S8_9CHRO)

HSP 1 Score: 73.2 bits (178), Expect = 3.030e-15
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   13 ISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDHVEA 159
            IS   CG SLPE W   ++FEDW+LDDPDG+PL+TFRRVR E+K+ VE 
Sbjct:   77 ISLCGCGVSLPEGWILREIFEDWQLDDPDGQPLDTFRRVRDEVKERVEV 125
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BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Match: A0A401IKG8_APHSA (Arsenate reductase, glutathione/glutaredoxin type n=2 Tax=Aphanothece sacrum TaxID=1122 RepID=A0A401IKG8_APHSA)

HSP 1 Score: 72.4 bits (176), Expect = 4.210e-15
Identity = 30/49 (61.22%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   13 ISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDHVEA 159
            IS   CG +LP+ W   ++FEDW+LDDPDG+PLETF RVR E+KD VE+
Sbjct:   61 ISLCGCGVNLPQDWVLREVFEDWQLDDPDGQPLETFHRVRDEVKDRVES 109
[Close]
BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Match: A0A6H1TRU9_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=3 Tax=Cyanobacteria TaxID=1117 RepID=A0A6H1TRU9_9CYAN)

HSP 1 Score: 72.8 bits (177), Expect = 4.290e-15
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   13 ISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDHVE 156
            IS   CG +LPE W   ++FEDW+LDDPDG+PLETFRRVR EI+D V+
Sbjct:   78 ISLCGCGVNLPEVWVLREIFEDWQLDDPDGQPLETFRRVREEIRDRVQ 125
[Close]
BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Match: A0A372DGK2_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=4 Tax=Limnothrix TaxID=132605 RepID=A0A372DGK2_9CYAN)

HSP 1 Score: 72.0 bits (175), Expect = 1.010e-14
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:   13 ISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDHVEA 159
            IS   CG +LPE W   +LFEDW+LDDPDG+P+E FRRVR EI+D V A
Sbjct:   77 ISLCGCGVNLPEAWVLRELFEDWQLDDPDGQPIEVFRRVRDEIRDRVTA 125
[Close]
BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Match: A0A352XBU4_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=1 Tax=Cyanobacteria bacterium UBA11367 TaxID=2055774 RepID=A0A352XBU4_9CYAN)

HSP 1 Score: 71.6 bits (174), Expect = 1.220e-14
Identity = 29/48 (60.42%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   13 ISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDHVE 156
            IS   CG +LP+PW   + FEDW+LDDPDG+P+ETF+RVR EIK+ V+
Sbjct:   77 ISLCGCGVNLPDPWVLREFFEDWELDDPDGQPIETFQRVRDEIKERVQ 124
[Close]
BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Match: A0A6P0SBC4_9CYAN (Arsenate reductase, glutathione/glutaredoxin type n=26 Tax=Moorena TaxID=1155738 RepID=A0A6P0SBC4_9CYAN)

HSP 1 Score: 71.2 bits (173), Expect = 1.720e-14
Identity = 31/47 (65.96%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   13 ISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDHV 153
            IS   CG +LPE W    +FEDW+LDDPDG+PLETFRRVR EIK+ V
Sbjct:   77 ISLCGCGVNLPEAWVLRDVFEDWQLDDPDGQPLETFRRVRDEIKERV 123
[Close]
BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Match: A0A563W0I6_9CYAN (Glutaredoxin arsenate reductase n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563W0I6_9CYAN)

HSP 1 Score: 71.2 bits (173), Expect = 1.720e-14
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   13 ISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDHV 153
            IS   CGTSLP  W   ++FEDW+LDDPDG+P+ETF RVR EIK+ V
Sbjct:   77 ISMCGCGTSLPSEWVTQEVFEDWELDDPDGQPIETFHRVRDEIKEQV 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110652.881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD71_ECTSI3.780e-2281.63Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A1Z4RNP1_9CHRO1.070e-1568.09Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A357A7M0_9CYAN2.950e-1563.27Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A6P2A8S8_9CHRO3.030e-1563.27Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A401IKG8_APHSA4.210e-1561.22Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A6H1TRU9_9CYAN4.290e-1564.58Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A372DGK2_9CYAN1.010e-1463.27Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A352XBU4_9CYAN1.220e-1460.42Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A6P0SBC4_9CYAN1.720e-1465.96Arsenate reductase, glutathione/glutaredoxin type ... [more]
A0A563W0I6_9CYAN1.720e-1463.83Glutaredoxin arsenate reductase n=1 Tax=Hyella pat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110652contigH-elongata_contig110652:202..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue6.1e-18
Seed eggNOG ortholog2880.D8LD71
EggNOG free text desc.Low molecular weight phosphatase family
EggNOG OGs2SAW9@2759,COG0394@1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size162
Cds size162
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.339159-CDS-H-elongata_contig110652:201..3631622929633.339159-CDS-H-elongata_contig110652:201..363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110652 202..363 +
1691679099.469402-CDS-H-elongata_contig110652:201..3631691679099.469402-CDS-H-elongata_contig110652:201..363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110652 202..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110652.881.1prot_H-elongata_contig110652.881.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110652 202..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110652.881.1

>prot_H-elongata_contig110652.881.1 ID=prot_H-elongata_contig110652.881.1|Name=mRNA_H-elongata_contig110652.881.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
MSLDISWRSCGTSLPEPWKKAKLFEDWKLDDPDGKPLETFRRVRSEIKDH
VEA*
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mRNA from alignment at H-elongata_contig110652:202..363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110652.881.1 ID=mRNA_H-elongata_contig110652.881.1|Name=mRNA_H-elongata_contig110652.881.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig110652:202..363+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCTCGACATTTCTTGGCGTAGCTGCGGAACAAGCCTCCCCGAGCC
ATGGAAGAAGGCCAAGCTCTTCGAGGACTGGAAACTCGACGACCCCGACG
GGAAGCCACTCGAGACGTTCCGTAGAGTGCGCTCGGAGATAAAGGACCAC
GTCGAGGCGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig110652:202..363+

>mRNA_H-elongata_contig110652.881.1 ID=mRNA_H-elongata_contig110652.881.1|Name=mRNA_H-elongata_contig110652.881.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig110652:202..363+ (Himanthalia elongata Himel1 dioecious)
ATGTCTCTCGACATTTCTTGGCGTAGCTGCGGAACAAGCCTCCCCGAGCC
ATGGAAGAAGGCCAAGCTCTTCGAGGACTGGAAACTCGACGACCCCGACG
GGAAGCCACTCGAGACGTTCCGTAGAGTGCGCTCGGAGATAAAGGACCAC
GTCGAGGCGTGAATGTCTCTCGACATTTCTTGGCGTAGCTGCGGAACAAG
CCTCCCCGAGCCATGGAAGAAGGCCAAGCTCTTCGAGGACTGGAAACTCG
ACGACCCCGACGGGAAGCCACTCGAGACGTTCCGTAGAGTGCGCTCGGAG
ATAAAGGACCACGTCGAGGCGTGA
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