mRNA_H-elongata_contig11058.877.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11058.877.1
Unique NamemRNA_H-elongata_contig11058.877.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11058.877.1 vs. uniprot
Match: D8LHV1_ECTSI (Protein kinase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHV1_ECTSI)

HSP 1 Score: 55.1 bits (131), Expect = 4.660e-7
Identity = 24/60 (40.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   13 VSNGTWNGVGSIGDVNFAAIKLNSDGEVVWRWQNGTSGSDEMWACVET-ADGNVVLAGFT 189
            +++G W    S+G  +F A K++ DG ++W+WQ+GT G D +WA V    +G+V++AG T
Sbjct:  119 INDGEW-ATPSVGGYDFIAYKVDGDGNLLWKWQDGTIGFDILWAVVSADEEGSVIMAGMT 177
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BLAST of mRNA_H-elongata_contig11058.877.1 vs. uniprot
Match: A0A6H5JZC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC7_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.150e-6
Identity = 31/73 (42.47%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:    1 VVTGVSNGTWNGVGS-IGDVNFAAIKLNSDGEVVWRWQNGTSGSDEMWACVETADG----NVVLAGFTDHSWA 204
            V+ G + G W G  + +GD  FAA+KL+  G V+W+WQ+GTS  DE+   + +A+      VVL G T+ SWA
Sbjct:   87 VLAGSTEGDWGGTNAGLGD--FAAVKLDESGAVLWKWQSGTS-DDELLVGITSANSASGSEVVLVGRTEGSWA 156
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BLAST of mRNA_H-elongata_contig11058.877.1 vs. uniprot
Match: A0A1F3KGC2_9BACT (Por_Secre_tail domain-containing protein n=1 Tax=Bacteroidetes bacterium GWF2_35_48 TaxID=1797343 RepID=A0A1F3KGC2_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 7.600e-6
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   40 GSIGDVNFAAIKLNSDGEVVWRWQNGTSGSDEMWACVETADGNVVLAGFT 189
            G+ G+ +FA +KLNS G+++W+   G S  DE  + V+TADG  VLAG+T
Sbjct:   63 GNHGNSDFAVVKLNSSGQILWQKLYGGSEDDECTSFVQTADGGFVLAGYT 112
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BLAST of mRNA_H-elongata_contig11058.877.1 vs. uniprot
Match: A0A521HIF5_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A521HIF5_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 4.980e-5
Identity = 22/57 (38.60%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:   49 GDVNFAAIKLNSDGEVVWRWQNGTSGSDEMWACVETADGNVVLAGFTDHSWAEGVYN 219
            GD + + IKLN+ G+VVW +  GT+G D   + ++ A+G +++AG+T+   A  V N
Sbjct:  269 GDADMSIIKLNATGDVVWTFNYGTAGYDRASSILQRANGEIMVAGYTNIGIAPDVIN 325
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BLAST of mRNA_H-elongata_contig11058.877.1 vs. uniprot
Match: D7FIH5_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI)

HSP 1 Score: 48.9 bits (115), Expect = 6.800e-5
Identity = 24/64 (37.50%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    4 VTGVSNGTWNGVG-SIGDVNFAAIKLNSDGEVVWRWQNGTSGSDEMWACVETADGNVVLAGFTD 192
            + G + G+ +G+  + G  + A  KL+SDG ++W WQ GT+G D M     T DG VV+ G+++
Sbjct:   35 LAGKTTGSLDGITLNAGGEDMAVGKLDSDGVLLWSWQEGTTGEDTMSDAAATDDGGVVVGGYSN 98
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BLAST of mRNA_H-elongata_contig11058.877.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 6.890e-5
Identity = 25/62 (40.32%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    4 VTGVSNGTWNGVG-SIGDVNFAAIKLNSDGEVVWRWQNGTSGSDEMWACVETADGNVVLAGF 186
            + G + G+ +G+  + G  + AA KL+SDG V+W WQ G++  D +     T DG VV AGF
Sbjct:   38 LAGTTEGSLDGITFNAGGTDMAAGKLDSDGAVLWYWQEGSTEDDTLADAAATDDGGVVFAGF 99
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BLAST of mRNA_H-elongata_contig11058.877.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 48.5 bits (114), Expect = 9.570e-5
Identity = 26/64 (40.62%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:    1 VVTGVSNGTWNGVGSIGDVNFAAIKLNSDGEVVWRWQNGTSGSDEMWAC-VETADGNVVLAGFT 189
            +  G + G+W+G  + GD +FAA +L+ +GE +WR+Q+GT   D M A  +   D +VV+AG T
Sbjct:  116 ICVGQTYGSWDGDAN-GDSDFAAFRLDGNGEEIWRYQDGTEEEDLMTAAAMGDGDSSVVMAGQT 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11058.877.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHV1_ECTSI4.660e-740.00Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6H5JZC7_9PHAE1.150e-642.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1F3KGC2_9BACT7.600e-648.00Por_Secre_tail domain-containing protein n=1 Tax=B... [more]
A0A521HIF5_9BACT4.980e-538.60T9SS type A sorting domain-containing protein n=1 ... [more]
D7FIH5_ECTSI6.800e-537.50Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
A0A6H5L7T2_9PHAE6.890e-540.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY76_9PHAE9.570e-540.63Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11058contigH-elongata_contig11058:3619..4259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue6e-08
Seed eggNOG ortholog2880.D8LRF5
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons2
Model size220
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929633.0450332-CDS-H-elongata_contig11058:3619..37271622929633.0450332-CDS-H-elongata_contig11058:3619..3727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 3620..3727 -
1691679099.3216348-CDS-H-elongata_contig11058:3619..37271691679099.3216348-CDS-H-elongata_contig11058:3619..3727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 3620..3727 -
1622929633.0668526-CDS-H-elongata_contig11058:4148..42591622929633.0668526-CDS-H-elongata_contig11058:4148..4259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 4149..4259 -
1691679099.337243-CDS-H-elongata_contig11058:4148..42591691679099.337243-CDS-H-elongata_contig11058:4148..4259Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 4149..4259 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11058.877.1prot_H-elongata_contig11058.877.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11058 3620..4259 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11058.877.1

>prot_H-elongata_contig11058.877.1 ID=prot_H-elongata_contig11058.877.1|Name=mRNA_H-elongata_contig11058.877.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
VVTGVSNGTWNGVGSIGDVNFAAIKLNSDGEVVWRWQNGTSGSDEMWACV
ETADGNVVLAGFTDHSWAEGVYN
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mRNA from alignment at H-elongata_contig11058:3619..4259-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11058.877.1 ID=mRNA_H-elongata_contig11058.877.1|Name=mRNA_H-elongata_contig11058.877.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=641bp|location=Sequence derived from alignment at H-elongata_contig11058:3619..4259- (Himanthalia elongata Himel1 dioecious)
GTTGTGACCGGCGTGTCCAACGGGACGTGGAACGGAGTAGGGTCGATCGG
GGATGTCAATTTCGCCGCTATCAAGCTCAATTCGGACGGTGAAGTTGTCT
GGCGATGGCAGGTGAATTAAAGCGCTGCAATTTACGCTCAAATTGAAGCA
GAAACCGCCGGTAAATTATCTGTGACAGGGTTTATGTAGCAAGCGACAGA
AGTACAATATTATGCAGTACCTAGCACTACTCATACAATTAAACACAAGA
TTAAAGTAATTCATATTTTTTTACAGAAGATTAAATTGGCATTGACCAGT
GGTCGGCCGTACGAGGGGCACGTTCCTCAACTACTAGGTAAACTCCAAGC
ATCTAGGTAGTCGTCATGTCAGTCATCTCAGTTATGGAGTAAGAATAAGG
TAATACATTTGAGATTCAGGAGAATGTACGATGCTAGTGTCTCTCAGTCA
ACCAGAAGGAACTCGAATGGCACAACATGGGAGATCAGCTCAGCACATAC
TAATATGCACAAAATAATTCCGTCTACGTCAGAATGGAACAAGCGGGTCA
GACGAGATGTGGGCGTGTGTAGAAACTGCAGATGGAAACGTGGTCCTGGC
TGGGTTCACCGACCATTCGTGGGCCGAGGGTGTCTACAACG
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Coding sequence (CDS) from alignment at H-elongata_contig11058:3619..4259-

>mRNA_H-elongata_contig11058.877.1 ID=mRNA_H-elongata_contig11058.877.1|Name=mRNA_H-elongata_contig11058.877.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig11058:3619..4259- (Himanthalia elongata Himel1 dioecious)
GTTGTGACCGGCGTGTCCAACGGGACGTGGAACGGAGTAGGGTCGATCGG
GGATGTCAATTTCGCCGCTATCAAGCTCAATTCGGACGGTGAAGTTGTCT
GGCGATGGCAGGTTGTGACCGGCGTGTCCAACGGGACGTGGAACGGAGTA
GGGTCGATCGGGGATGTCAATTTCGCCGCTATCAAGCTCAATTCGGACGG
TGAAGTTGTCTGGCGATGGCAGAATGGAACAAGCGGGTCAGACGAGATGT
GGGCGTGTGTAGAAACTGCAGATGGAAACGTGGTCCTGGCTGGGTTCACC
GACCATTCGTGGGCCGAGGGTGTCTACAACAATGGAACAAGCGGGTCAGA
CGAGATGTGGGCGTGTGTAGAAACTGCAGATGGAAACGTGGTCCTGGCTG
GGTTCACCGACCATTCGTGGGCCGAGGGTGTCTACAAC
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