mRNA_H-elongata_contig11058.876.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11058.876.1
Unique NamemRNA_H-elongata_contig11058.876.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Match: D7FIH5_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 4.090e-51
Identity = 110/249 (44.18%), Postives = 148/249 (59.44%), Query Frame = 3 
Query:   18 VAVKLSADNGEMIWSYQGENYNDAGAYVY-----GAVARMDGSIVLCGRTFGSFTGDSFSVEYGLTDFLAVAIDEDGNELWRWQDGPGVGMNVFEAAGAFADGSVVLAGYTAGDWSGSNMGGYDFAAVKLDASGEEEWRIQFGTELDDVWKGAAVDADD-SFVLTGYTYGSWVAYQAGSDFDRDFVGISLDAEGNILWEYQAGTTEDESMNDVVIRSDGLILLAGWTDGPFTEPEGSSDTLYDFVAVLL 746
            VAVKL   +G +IW YQ      AG   Y     GA +R DGSIV+ G T G + G+      G  DF +VA+DEDG+ELWR+QDG    ++      A +DGSVVLAG T GD++G+N G  DFA VKL   G  +W  Q GT  D+ ++G A   D  S V  GYT+G+W A QA  + D D VG+S+D +G +LW YQAGTT  ++   V +  DG  LLAG++ G + +P  ++D+  DF  VL+
Sbjct:  169 VAVKLDVSDGSVIWRYQ------AGVPSYSVVSRGAASRADGSIVIGGTTDGDWDGELT----GYADFFSVALDEDGSELWRFQDGSLFSISSAWGVAALSDGSVVLAGTTDGDYAGTNAGAQDFAVVKLTEEGVLDWTWQDGTLYDESFEGVATGIDGTSMVFAGYTFGTWAAAQAEDEDDMDAVGMSMDGDGTLLWTYQAGTTSYDNFIGVDVGPDGAALLAGFSQGAWEDP--TADSYADFAGVLI 405
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BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Match: D7FIH4_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH4_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 2.000e-50
Identity = 106/244 (43.44%), Postives = 144/244 (59.02%), Query Frame = 3 
Query:   18 VAVKLSADNGEMIWSYQGENYNDAGAYVYGAVARMDGSIVLCGRTFGSFTGDSFSVEYGLTDFLAVAIDEDGNELWRWQDGPGVGMNVFEAAGAFADGSVVLAGYTAGDWSGSNMGGYDFAAVKLDASGEEEWRIQFGTELDDVWKGAAVDADD-SFVLTGYTYGSWVAYQAGSDFDRDFVGISLDAEGNILWEYQAGTTEDESMNDVVIRSDGLILLAGWTDGPFTEPEGSSDTLYDFVAVLL 746
            VAVKL   +G +IW YQ            G+ +R DGSIV+ G T G + G+      G TDF  VA+DEDG+ELWR+QDG  +  +      A +DGSVVLAG T G+++G+N G  DFA VKL   G  +W  Q GT  D+ ++G A   D  S V  GYT+G+W A QA  + D D VG+S+D +G +LW YQAGTT  ++   V +  DG  LLAG++ G + +P  ++D   DF  VL+
Sbjct:  115 VAVKLDVTDGSVIWQYQA-GVPSQSVVSRGSASRADGSIVIGGVTDGDWDGELT----GFTDFFTVALDEDGSELWRFQDGSLLSSSSAWGVAALSDGSVVLAGTTDGNYAGTNAGAQDFAVVKLTEEGVLDWTWQDGTPYDESFEGVATGIDGTSMVFAGYTFGTWAAAQAEDEDDMDAVGMSMDGDGTLLWTYQAGTTNHDNFIGVDVGPDGAALLAGFSAGTWEDP--TADFYADFAGVLI 351
[Close]
BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 5.450e-49
Identity = 112/249 (44.98%), Postives = 146/249 (58.63%), Query Frame = 3 
Query:   18 VAVKLSADNGEMIWSYQGENYNDAGAYVY-----GAVARMDGSIVLCGRTFGSFTGDSFSVEYGLTDFLAVAIDEDGNELWRWQDGPGVGMNVFEAAGAFADGSVVLAGYTAGDWSGSNMGGYDFAAVKLDASGEEEWRIQFGTELDDVWKGAAVDADD-SFVLTGYTYGSWVAYQAGSDFDRDFVGISLDAEGNILWEYQAGTTEDESMNDVVIRSDGLILLAGWTDGPFTEPEGSSDTLYDFVAVLL 746
            VAVKL   +G +IW YQ      AG   Y     GA +R DGSIV+ G T G + G+      G  DF +VA++EDG+ELWR+QDG    ++      A +DGSVVLAG T GD++ +N G  DFA VKL   G  +W  Q GT  DD ++GAA   D  S V  GYTYG+W A QA  + D D VG+S+D +G +LW YQAGTT  E+   V +  DG  LLAG++ G  T  + ++D   DF  VL+
Sbjct:  172 VAVKLDVTDGSVIWQYQ------AGVPSYSVVSRGAASRADGSIVIGGSTDGDWDGELT----GYADFFSVALNEDGSELWRFQDGSEFSISSAWGVAALSDGSVVLAGVTDGDYAETNAGEQDFALVKLTEEGVLDWTWQDGTPYDDGFEGAATGIDGTSMVFVGYTYGTWAAEQAEDEEDSDAVGMSMDGDGTLLWTYQAGTTGFETFVGVDVSPDGAALLAGYSTG--TWEDSTTDFYADFAGVLI 408
[Close]
BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Match: D7G7A3_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A3_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 2.030e-37
Identity = 102/257 (39.69%), Postives = 132/257 (51.36%), Query Frame = 3 
Query:    3 GWNDAVAVKLSADNGEMIWSYQGENYNDAGAYVYGAVARMDGSIVLCGRTFGSFTGDSFSVEYGLTDFLAVAIDEDGNELWRWQDGPG-----VGMNVFEAAGAFADGSVVLAGYTAGDWSGSNMGGYDFAAVKLDASGEEEWRIQFGTELDDVWKGAAVDADDSFVLTGYTYGSWVAYQAGSDFDRDFVGISLDAEGNILWEYQAGTTEDESMNDVVIRSDGLILLAGWTDGPFTEPEGSSDTLYDFVAVLLNATD 758
            G  D +AVKL  D G   W +Q    ++    +  AV   DGS+VL G T G ++G +     GL D  AV +DE G  LW+WQ G       VG+    +A + +   VVL G T G W+ SN+GGYDF A KLDA G E W  Q GT+ DD  K  AVD D S  L GYT G W     G   + DF    LDA G + W +Q GT ++E    VV+  DG + LAG++ G F      S+    FV V ++  D
Sbjct:  224 GGFDFLAVKLGPD-GVYSWHWQDGTSDEDN--LNDAVVNSDGSVVLAGSTEGDWSGTNA----GLGDLAAVKLDESGAVLWKWQSGTSDDELLVGIT---SANSASGSEVVLVGRTEGSWAASNVGGYDFCAAKLDADGNELWSWQDGTDADDTTKAVAVDGDGSVFLAGYTEGDWNQPNEG---ETDFAVTKLDANGTLAWRWQDGTEDEEFGLMVVVGRDGGVYLAGYSTGAFGGINKGSE---GFVVVKIDGRD 464
[Close]
BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Match: D8LAU1_ECTSI (PEGA domain family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU1_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 5.660e-34
Identity = 96/254 (37.80%), Postives = 137/254 (53.94%), Query Frame = 3 
Query:    3 GWNDAVAVKLSADNGEMIWSYQGENYNDAGAYVYGAVARMDG-SIVLCGRTFGSFTGDSFSVEYGLTDFLAVAID-EDGNELWRWQDGPGVGMNVFEAAGAFADGS-VVLAGYTAGDWSGSNMGGYDFAAVKLDASGEEEWRIQFGTELDDVWKGAAVDADDSFVLTGYTYGSWVAYQAGSDFDRDFVGISLDAEGN-ILWEYQAGTTEDES-MNDVVIRSDGLILLAGWTDGPFTEPEGSSDTLYDFVAVLLN 749
            G+ D  AV L AD+GE++W +Q  + ++    +YGA    +G S+V+ G T G+F+G    V  G  DF+A+ ++  DG+E+WRWQDG     +   A    ADG+  VL G T GDW G N G  DFA V LD  G E WR Q GT   +   G AV  D S +L G         +   D    F  + L A+G  + W +Q G   D S + D+   +DG ++LAG+TDG + +  G++    DF+AV+LN
Sbjct:  101 GFVDFTAVSLDADSGELLWKWQ--DGSEGFDVIYGATLADEGESVVMAGYTSGNFSG----VNAGSNDFVAIKLNFTDGSEVWRWQDGTDE-WDQIGAVAETADGTGFVLVGSTQGDWDGDNAGNGDFAVVMLDVDGNESWRWQDGTTEQEWLVGVAVQDDGSILLAGQQM------ETTGDESVFFTALKLQADGEEVTWRWQGGNAGDASRLYDMAAGADGKMILAGYTDGSWED--GANLGADDFLAVMLN 339
[Close]
BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Match: D7G371_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G371_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.460e-33
Identity = 72/165 (43.64%), Postives = 99/165 (60.00%), Query Frame = 3 
Query:  192 GLTDFLAVAIDEDGNELWRWQDGPGVGMNVFEAAGAFADGSVVLAGYTAGDWSGSNMGGYDFAAVKLDASGEEEWRIQFGTELDDVWKGAAVDADDSFVLTGYTYGSWVAYQAGSDFDRDFVGISLDAEGNILWEYQAGTTEDESMNDVVIRSDGLILLAGWTDG 686
            G TDF A  +D  GN  WRWQ     G+N   +  A A+ S +L G T G+++G++ GG DF AVKLD SG E WR Q GT  DDV +  A   D S VL G+TYGSW +  A   F +DF  + L ++G  +W +Q GTTED+++    I+ DG ++L+G + G
Sbjct:   45 GGTDFAACKLDSSGNVTWRWQATTD-GLNAVSSI-APANDSFILGGRTTGNFNGTSAGGTDFVAVKLDDSGTEVWRWQDGTVQDDVVEAVAHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLSSDGKEIWRWQDGTTEDDTLEGAAIQEDGSVVLSGNSGG 207
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BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Match: A0A6H5LJ25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJ25_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 6.240e-32
Identity = 71/163 (43.56%), Postives = 97/163 (59.51%), Query Frame = 3 
Query:  198 TDFLAVAIDEDGNELWRWQDGPGVGMNVFEAAGAFADGSVVLAGYTAGDWSGSNMGGYDFAAVKLDASGEEEWRIQFGTELDDVWKGAAVDADDSFVLTGYTYGSWVAYQAGSDFDRDFVGISLDAEGNILWEYQAGTTEDESMNDVVIRSDGLILLAGWTDG 686
            TDF A  +D  GN  WRWQ     G++   +  A A+GS VL G T GD++G++ GG DF AVKLD SG E WR Q GT  DD  +      D S VL G+TYGSW +  A   F +DF  + L ++G  +W +Q GTTED+++    I+ DG ++L+G + G
Sbjct:  173 TDFAACKLDSSGNVTWRWQATTD-GLDAVSSI-APANGSFVLGGRTTGDFNGTSAGGTDFVAVKLDDSGTEVWRWQDGTAEDDFVEAVVHSDDGSAVLAGHTYGSWSSDNADGSFSKDFAAVMLSSDGKEIWRWQDGTTEDDTLEGAAIQGDGSVVLSGNSGG 333
[Close]
BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Match: A0A6H5KY76_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY76_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 8.430e-21
Identity = 73/204 (35.78%), Postives = 90/204 (44.12%), Query Frame = 3 
Query:  237 ELWRWQDGPGVGMNVFEAAGAFADGSVVLAGYTAGDWSGSNMGGYDFAAVKLDASGEEEWRIQFG------------------------------TELDDVWKGAAVDADDSFVLTGYTYGSWVAYQAGSDFDRDFVGISLDAEGNILWEYQAGTTEDESMNDVVIRS-DGLILLAGWTDGPFTEPEGSSDTLYDFVAVLLNAT 755
            ELW WQDG     +VF       +GS VLAG T G W G+N GG D AA+KLDA G E WR Q G                              T  DD+    A+  D S +  G TYGSW      ++ D DF    LD  G  +W YQ GT E++ M    +   D  +++AG T   F+    S     D V V LNAT
Sbjct:    4 ELWVWQDGTSE-TDVFAGGAMGPNGSCVLAGATEGAWDGTNFGGNDMAAIKLDAEGNELWRYQDGSVVLAGHQNLDFYVTXXXXXXXXXXXXXXXTPEDDIPYWMAMAGDGSVICVGQTYGSW---DGDANGDSDFAAFRLDGNGEEIWRYQDGTEEEDLMTAAAMGDGDSSVVMAGQTYVNFSGASNSGSA--DIVVVKLNAT 201
[Close]
BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Match: A0A6C0GQI2_9BACT (T9SS type A sorting domain-containing protein n=1 Tax=Rhodocytophaga rosea TaxID=2704465 RepID=A0A6C0GQI2_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 1.220e-15
Identity = 63/226 (27.88%), Postives = 106/226 (46.90%), Query Frame = 3 
Query:   18 VAVKLSADNGEMIW--SYQGENYNDAGAYVYGAVARMDGSIVLCGRTFGSFTGDSFSVEYGLTDFLAVAIDEDGNELWRWQDGPGVGMNVFEAAGAFADGSVVLAGYTA----GDWSGSNMGGYDFAAVKLDASGEEEWRIQFGTELDDVWKGAAVDADDSFVLTGYTYGSWVAYQAGSDFDR-DFVGISLDAEGNILWEYQAGTTEDESMNDVVIRSDGLILLAG 674
            + +   A   E  W  ++ G N +     ++  VA  D   +L G +    +GD      G  D+  V  D  GN++W  + G G G +V  AA    D   +L GY++    GD SG N+G  DF  VK+D+ G   W   +G E  D+ + A    D  ++L G ++      ++ +   + D+  +S+D  GN LW+ + G  E + +++++   DG  LL G
Sbjct:   15 IHLSSQAQTPEKRWDKTFGGNNIDQ----LHTLVATRDEGFLLGGISNSIISGDKTQDRRGSFDYWIVKTDSTGNKIWDRRYG-GTGSDVLYAALQTQDEGYLLLGYSSSGKGGDKSGDNIGEEDFWVVKIDSQGNLLWEKTYGGEGGDILRSAIETPDGGYLLAGNSFSDISGDKSENSLGQEDYWVVSIDKNGNKLWDKRYGGNEADFLSNIIYAPDGGFLLVG 235
[Close]
BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Match: A0A838IN59_9DELT (SBBP repeat-containing protein n=1 Tax=Bradymonadaceae bacterium TaxID=2740543 RepID=A0A838IN59_9DELT)

HSP 1 Score: 91.3 bits (225), Expect = 1.990e-15
Identity = 69/233 (29.61%), Postives = 112/233 (48.07%), Query Frame = 3 
Query:   12 DAVAVKLSADNGEMIWSYQGENYNDAGAY-VYGAVARMD-GSIVLCGRTFGSFTGDSFSVEYGLTDFLAVAIDEDGNELWRWQDGPGVGMNVFEAA---GAFADGSVVLAGYTAGDWSGS-NMGGYDFAAVKLDASGEEEWRIQFGTELDDVWKGAAVDADDSFVLTGYTYGSWVAYQAGSDFDRDFVGISLDAEGNILWEYQAGTTEDESMNDVVIRSDGLILLAGWTDGPF 692
            DA   +   D GE +W        D+G+   + +VA  + G + + G T GSF   + + ++   D L    D  GN++W  Q     G N +E A      A G+  + G+T G ++GS N GG D    +    GE EW +QFGT+ +D  +G A D+ ++  + G+T G+ +  QA    +  +V +  D +G  LW  Q GTT  +      + S+  + ++G T G F
Sbjct:  448 DAFIARYDTD-GEQVWM----RVVDSGSRDEFNSVAIDNKGMVYVAGFTHGSFENQTSAGDF---DALIARYDATGNQVWLRQ----FGTNAYELAYDVAVDALGAAYIVGHTYGAFAGSENQGGLDGFLARFTVEGEREWVVQFGTDANDFAQGVATDSHNNAFVVGHTAGT-LEGQASRGTEDAYV-LKFDRDGEQLWSRQFGTTFADQAFSTAVDSNDHVYISGTTAGDF 666
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11058.876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIH5_ECTSI4.090e-5144.18Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
D7FIH4_ECTSI2.000e-5043.44Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
A0A6H5L7T2_9PHAE5.450e-4944.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7A3_ECTSI2.030e-3739.69Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
D8LAU1_ECTSI5.660e-3437.80PEGA domain family protein n=1 Tax=Ectocarpus sili... [more]
D7G371_ECTSI2.460e-3343.64Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
A0A6H5LJ25_9PHAE6.240e-3243.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY76_9PHAE8.430e-2135.78Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A6C0GQI2_9BACT1.220e-1527.88T9SS type A sorting domain-containing protein n=1 ... [more]
A0A838IN59_9DELT1.990e-1529.61SBBP repeat-containing protein n=1 Tax=Bradymonada... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11058contigH-elongata_contig11058:290..3618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.1
Seed ortholog evalue1.6e-31
Seed eggNOG ortholog2880.D8LRF5
Preferred nameRIPK4
KEGG koko:K02861,ko:K08846,ko:K08847,ko:K08848,ko:K16289
KEGG Pathwayko04064,ko04210,ko04217,ko04620,ko04621,ko04622,ko04623,ko04668,ko04722,ko05131,ko05152,ko05160,ko05169,map04064,map04210,map04217,map04620,map04621,map04622,map04623,map04668,map04722,map05131,map05152,map05160,map05169
GOsGO:0002009,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006355,GO:0008150,GO:0009653,GO:0009888,GO:0009889,GO:0010468,GO:0010556,GO:0016020,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0032502,GO:0044093,GO:0044424,GO:0044464,GO:0048518,GO:0048729,GO:0048856,GO:0050789,GO:0050794,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051252,GO:0060255,GO:0060429,GO:0065007,GO:0065009,GO:0080090,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons5
Model size1953
Cds size1278
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.890864-UTR-H-elongata_contig11058:289..9141622929632.890864-UTR-H-elongata_contig11058:289..914Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11058 290..914 -
1691679099.242915-UTR-H-elongata_contig11058:289..9141691679099.242915-UTR-H-elongata_contig11058:289..914Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11058 290..914 -
1622929632.9898906-UTR-H-elongata_contig11058:3568..36181622929632.9898906-UTR-H-elongata_contig11058:3568..3618Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11058 3569..3618 -
1691679099.3104942-UTR-H-elongata_contig11058:3568..36181691679099.3104942-UTR-H-elongata_contig11058:3568..3618Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11058 3569..3618 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.9037495-CDS-H-elongata_contig11058:914..16401622929632.9037495-CDS-H-elongata_contig11058:914..1640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 915..1640 -
1691679099.2625089-CDS-H-elongata_contig11058:914..16401691679099.2625089-CDS-H-elongata_contig11058:914..1640Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 915..1640 -
1622929632.916457-CDS-H-elongata_contig11058:1872..20491622929632.916457-CDS-H-elongata_contig11058:1872..2049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 1873..2049 -
1691679099.2724738-CDS-H-elongata_contig11058:1872..20491691679099.2724738-CDS-H-elongata_contig11058:1872..2049Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 1873..2049 -
1622929632.9342272-CDS-H-elongata_contig11058:2578..27491622929632.9342272-CDS-H-elongata_contig11058:2578..2749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 2579..2749 -
1691679099.282926-CDS-H-elongata_contig11058:2578..27491691679099.282926-CDS-H-elongata_contig11058:2578..2749Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 2579..2749 -
1622929632.951656-CDS-H-elongata_contig11058:3010..31961622929632.951656-CDS-H-elongata_contig11058:3010..3196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 3011..3196 -
1691679099.2910812-CDS-H-elongata_contig11058:3010..31961691679099.2910812-CDS-H-elongata_contig11058:3010..3196Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 3011..3196 -
1622929632.9692564-CDS-H-elongata_contig11058:3550..35681622929632.9692564-CDS-H-elongata_contig11058:3550..3568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 3551..3568 -
1691679099.2995613-CDS-H-elongata_contig11058:3550..35681691679099.2995613-CDS-H-elongata_contig11058:3550..3568Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11058 3551..3568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11058.876.1prot_H-elongata_contig11058.876.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11058 915..3568 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11058.876.1

>prot_H-elongata_contig11058.876.1 ID=prot_H-elongata_contig11058.876.1|Name=mRNA_H-elongata_contig11058.876.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=426bp
MIWSYQGENYNDAGAYVYGAVARMDGSIVLCGRTFGSFTGDSFSVEYGLT
DFLAVAIDEDGNELWRWQDGPGVGMNVFEAAGAFADGSVVLAGYTAGDWS
GSNMGGYDFAAVKLDASGEEEWRIQFGTELDDVWKGAAVDADDSFVLTGY
TYGSWVAYQAGSDFDRDFVGISLDAEGNILWEYQAGTTEDESMNDVVIRS
DGLILLAGWTDGPFTEPEGSSDTLYDFVAVLLNATDSASFISSVTLSPSP
TVEPNPLTTPSPIVEPTPLATTFPTVEPTSQATPSSTVEPTPLATPSPTD
EPTLQPTPSPSPLLLFNPIEKRTPDPGSAPAVSPVSEDSGTSNEVIVGSS
VGVAFLAIVGVGVYCIWRRYGQGDMRATTTVPPALHGTSNKASTVARAAS
DLSHPPLPTYCEPPPYEDPPAYSRS*
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mRNA from alignment at H-elongata_contig11058:290..3618-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11058.876.1 ID=mRNA_H-elongata_contig11058.876.1|Name=mRNA_H-elongata_contig11058.876.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3329bp|location=Sequence derived from alignment at H-elongata_contig11058:290..3618- (Himanthalia elongata Himel1 dioecious)
ACGGCTGGAATGACGCTGTCGCAGTGAAGCTCTCTGCAGACAATGGGGAA
ATGATTTGGAGCTATCAGGTAGGCAAGTGCTGGGCCGTTTCTTAGTCCGT
GCCAAAATCGTCGATTCACGAACGGTAGCCATCATTGCTCGCGTATACCT
TACCCCGTGTGCGCCCCGATCGTCACATTCACTCGACTTCGTTAAGACTA
TTCGTGAGACCCCCCTCTCGCAAGCAGAGCTCGGAAACCGCCAGAACCCC
CCCGCCCCTCGAAAACATTAGCGCAGTTAAAAATACAGAGAAAGCTAGTA
TAATGTAATGTTCCTAGCGAGGACAGTCGCGGGCGTTTGTACGCGCCCCT
CTTGTGCCCCTTCTACCTTCTAGGTATCGTAAAAACTCATTGCCAACTCG
CCCTGTGAACGGTGAATGCCAGGGAGAAAATTACAATGATGCGGGCGCCT
ATGTGTACGGTGCTGTCGCCAGAATGGATGGTTCCATTGTGTTGTGCGGC
AGAACGTTTGGATCATTCACTGGTGACTCCTTCTCGGTAGAGTACGGCTT
GACTGACTTTCTCGCCGTTGCAATCGATGAAGACGGAAACGAGCTATGGC
GCTGGCAGGTGTGGTCAATTAAAGTCGTCCAGCTCTGGGTGCCTTTTACT
TTGGGGCGAGACCTCTGAAACCTTCTGATTAGTCACTGAAACCAATGTAT
TATTTGTACAGGCGGCGAGCTAGACTTGTCTGACGCAGTAGGAATGGAGA
TGGGAGACGCTGTAGAATATATTGTTATAGTTTTGAGTAGAGACGTGTTA
AGTCAGGTCTCAAGTTACGCCACGTGCGAACTTTGTGCACCTTTCCCTTA
TCCCCGTTGCCTTACGCAGGACGGACCTGGTGTTGGTATGAACGTTTTCG
AGGCTGCGGGTGCTTTCGCTGACGGCTCTGTTGTACTTGCTGGATATACT
GCGGGGGACTGGAGTGGGTCGAATATGGGGGGATATGACTTCGCGGCGGT
GAAGCTGGATGCCTCTGGTGAAGAAGAATGGCGTATACAGGTGATTTCTT
TGCTAAGCTCCGGCATGTCCCATCGTAAAAACTAATCAACGTTGGACGAG
CCCCACATTAGGGGTGACACTTCCTAGTCGATAGTTCTTTCAGCAGTCAA
GTCGTCGATTATCGCTCACATTCACTCCGCATCAGTCACCTCCGCATTAA
CAAAGCGATTATATCGAACACAACATCGATGTAGCGTTTGAGAATCAGAC
CGAGGCGACGTGCTACTCTCGACCGCCTAGCCGCATGATGTCAGAGAATT
TAACTAGAAAATTGACGCTTATTACAGTAGATATGATGCATCCCATAAGC
TCTACGGCAGCGCTCCCGGTCTGATATCCCAAGCAATAGCGATTGATTTC
GAAGGCACGCTCTTCGAACTAAAAGATGACTCTATCTCCAGAAGAGATCG
GGTAGCTAATAAATCATACCCTCGATGCTACTGTCTGTACTAGAAACTGC
CGTTTCGCATCTCAGTTGGCGAAGAGAGGATGACATCAATATTCATTTTG
TCCGTGCGTTTCTGGACAGTTTGGCACAGAGCTTGATGATGTGTGGAAGG
GAGCAGCTGTTGACGCTGACGACTCGTTCGTACTAACGGGATACACATAC
GGGAGCTGGGTAGCGTATCAGGCAGGCAGTGATTTTGACCGAGATTTTGT
CGGAATATCTTTGGACGCAGAAGGCAACATACTGTGGGAATATCAGGTGA
GAACATCGTTGATACAGTTAATCGATATCCCATCGTCATCAAAAGAAACG
CGACTTGTACAATGCTTTTTTCCTATGAACCTACCGATTTGGGTTTTAGC
GAGGCACGCAAGCAAAAAATACGCAAATGTTACTCCATTCTGAAACTTTC
CGTTCGTGGGATGGAATTATGGTTTATGTTGTACTTACCAAACAATGATC
CGTTCGGTTATCCTCTCTTCGTATCCAGGCCGGCACTACTGAAGACGAAA
GCATGAACGACGTCGTAATCCGCTCGGATGGTTTGATACTTCTTGCGGGA
TGGACCGATGGTCCTTTTACCGAGCCCGAAGGGTCCTCTGACACTTTATA
CGACTTTGTAGCAGTCTTACTCAATGCGACGGACAGTGCGAGTTTTATAA
GCTCGGTAACATTGTCACCCTCCCCGACCGTTGAACCGAACCCACTCACA
ACACCCTCCCCGATCGTTGAACCAACCCCACTAGCAACAACCTTCCCGAC
CGTTGAACCGACTTCACAAGCAACACCCTCCTCGACCGTTGAACCGACCC
CACTAGCAACACCCTCCCCGACCGATGAACCGACCCTACAACCCACACCG
TCTCCGTCACCACTGTTGCTGTTCAACCCGATTGAGAAACGTACCCCGGA
TCCCGGGTCGGCCCCTGCGGTGTCCCCTGTTTCTGAAGATTCGGGAACCT
CAAATGAAGTTATTGTGGGGAGCTCGGTTGGCGTGGCATTTCTGGCGATT
GTCGGCGTGGGTGTATATTGCATCTGGCGTCGGTATGGACAAGGGGATAT
GAGGGCCACAACCACCGTGCCCCCCGCTTTACATGGCACAAGCAACAAAG
CATCAACAGTGGCGAGAGCTGCCAGTGACTTGAGTCATCCGCCACTGCCA
ACTTACTGTGAACCTCCGCCGTACGAAGATCCCCCAGCTTATTCCCGTTC
GTAAGAAATGATGTTAATCCTTAGCAGCCATTTCGAGTTTCACTCAACCC
ACAAAACATGGTGTACAGTCATTATTCTCAAAGAGATTGTTTTGTACTAC
GGAGCAGCAACAAGAAATAGCCACCAATTCCTCAACGAAAGTTTCGAGGA
CCGCACCTGACTATTCAGAGGGGAGGGGGGGTCTGCCTTAGCTACTAGGC
GAGTCATCAATCAACTGGCGTCTCTGAGTCTTATGCAACGCCACGATCGG
GGTTGGTGGCTTTGTTCCAAGTCGAGAGCGGAGTAGTCTTAGAGAAAGTT
TACCTTCCCCTTGACTTTGTACTCGACGAGGTTTATATTGCAGAAACCGA
TGCAATGTCCGTGGAGCAACTGAATCGATGAGGTTGGTTTCAAGCTGTTA
AGATACCGTACCCTACCCAGTCAGGTTTCCTATGTGAGAGATTTTGACTC
TAATAGCGTGACCTATATGGCGTATAGGTTAATCGATGAACCTCACGAGG
GATGTGAGGGCGGTGTGTAAACACCTTCTGGGTAGATATATATATAAATC
TTGTATGTATTATACTCGTAGGAGAGGCAGGGTCCAATCCGGAGCTGCCC
TCTCACATACCAATAACAACCATCACAAG
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Coding sequence (CDS) from alignment at H-elongata_contig11058:290..3618-

>mRNA_H-elongata_contig11058.876.1 ID=mRNA_H-elongata_contig11058.876.1|Name=mRNA_H-elongata_contig11058.876.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2556bp|location=Sequence derived from alignment at H-elongata_contig11058:290..3618- (Himanthalia elongata Himel1 dioecious)
ATGATTTGGAGCTATCAGATGATTTGGAGCTATCAGGGAGAAAATTACAA
TGATGCGGGCGCCTATGTGTACGGTGCTGTCGCCAGAATGGATGGTTCCA
TTGTGTTGTGCGGCAGAACGTTTGGATCATTCACTGGTGACTCCTTCTCG
GTAGAGTACGGCTTGACTGACTTTCTCGCCGTTGCAATCGATGAAGACGG
AAACGAGCTATGGCGCTGGCAGGGAGAAAATTACAATGATGCGGGCGCCT
ATGTGTACGGTGCTGTCGCCAGAATGGATGGTTCCATTGTGTTGTGCGGC
AGAACGTTTGGATCATTCACTGGTGACTCCTTCTCGGTAGAGTACGGCTT
GACTGACTTTCTCGCCGTTGCAATCGATGAAGACGGAAACGAGCTATGGC
GCTGGCAGGACGGACCTGGTGTTGGTATGAACGTTTTCGAGGCTGCGGGT
GCTTTCGCTGACGGCTCTGTTGTACTTGCTGGATATACTGCGGGGGACTG
GAGTGGGTCGAATATGGGGGGATATGACTTCGCGGCGGTGAAGCTGGATG
CCTCTGGTGAAGAAGAATGGCGTATACAGGACGGACCTGGTGTTGGTATG
AACGTTTTCGAGGCTGCGGGTGCTTTCGCTGACGGCTCTGTTGTACTTGC
TGGATATACTGCGGGGGACTGGAGTGGGTCGAATATGGGGGGATATGACT
TCGCGGCGGTGAAGCTGGATGCCTCTGGTGAAGAAGAATGGCGTATACAG
TTTGGCACAGAGCTTGATGATGTGTGGAAGGGAGCAGCTGTTGACGCTGA
CGACTCGTTCGTACTAACGGGATACACATACGGGAGCTGGGTAGCGTATC
AGGCAGGCAGTGATTTTGACCGAGATTTTGTCGGAATATCTTTGGACGCA
GAAGGCAACATACTGTGGGAATATCAGTTTGGCACAGAGCTTGATGATGT
GTGGAAGGGAGCAGCTGTTGACGCTGACGACTCGTTCGTACTAACGGGAT
ACACATACGGGAGCTGGGTAGCGTATCAGGCAGGCAGTGATTTTGACCGA
GATTTTGTCGGAATATCTTTGGACGCAGAAGGCAACATACTGTGGGAATA
TCAGGCCGGCACTACTGAAGACGAAAGCATGAACGACGTCGTAATCCGCT
CGGATGGTTTGATACTTCTTGCGGGATGGACCGATGGTCCTTTTACCGAG
CCCGAAGGGTCCTCTGACACTTTATACGACTTTGTAGCAGTCTTACTCAA
TGCGACGGACAGTGCGAGTTTTATAAGCTCGGTAACATTGTCACCCTCCC
CGACCGTTGAACCGAACCCACTCACAACACCCTCCCCGATCGTTGAACCA
ACCCCACTAGCAACAACCTTCCCGACCGTTGAACCGACTTCACAAGCAAC
ACCCTCCTCGACCGTTGAACCGACCCCACTAGCAACACCCTCCCCGACCG
ATGAACCGACCCTACAACCCACACCGTCTCCGTCACCACTGTTGCTGTTC
AACCCGATTGAGAAACGTACCCCGGATCCCGGGTCGGCCCCTGCGGTGTC
CCCTGTTTCTGAAGATTCGGGAACCTCAAATGAAGTTATTGTGGGGAGCT
CGGTTGGCGTGGCATTTCTGGCGATTGTCGGCGTGGGTGTATATTGCATC
TGGCGTCGGTATGGACAAGGGGATATGAGGGCCACAACCACCGTGCCCCC
CGCTTTACATGGCACAAGCAACAAAGCATCAACAGTGGCGAGAGCTGCCA
GTGACTTGAGTCATCCGCCACTGCCAACTTACTGTGAACCTCCGCCGTAC
GAAGATCCCCCAGCTTATTCCCGTTCGTAAGCCGGCACTACTGAAGACGA
AAGCATGAACGACGTCGTAATCCGCTCGGATGGTTTGATACTTCTTGCGG
GATGGACCGATGGTCCTTTTACCGAGCCCGAAGGGTCCTCTGACACTTTA
TACGACTTTGTAGCAGTCTTACTCAATGCGACGGACAGTGCGAGTTTTAT
AAGCTCGGTAACATTGTCACCCTCCCCGACCGTTGAACCGAACCCACTCA
CAACACCCTCCCCGATCGTTGAACCAACCCCACTAGCAACAACCTTCCCG
ACCGTTGAACCGACTTCACAAGCAACACCCTCCTCGACCGTTGAACCGAC
CCCACTAGCAACACCCTCCCCGACCGATGAACCGACCCTACAACCCACAC
CGTCTCCGTCACCACTGTTGCTGTTCAACCCGATTGAGAAACGTACCCCG
GATCCCGGGTCGGCCCCTGCGGTGTCCCCTGTTTCTGAAGATTCGGGAAC
CTCAAATGAAGTTATTGTGGGGAGCTCGGTTGGCGTGGCATTTCTGGCGA
TTGTCGGCGTGGGTGTATATTGCATCTGGCGTCGGTATGGACAAGGGGAT
ATGAGGGCCACAACCACCGTGCCCCCCGCTTTACATGGCACAAGCAACAA
AGCATCAACAGTGGCGAGAGCTGCCAGTGACTTGAGTCATCCGCCACTGC
CAACTTACTGTGAACCTCCGCCGTACGAAGATCCCCCAGCTTATTCCCGT
TCGTAA
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