mRNA_H-elongata_contig110544.872.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110544.872.1
Unique NamemRNA_H-elongata_contig110544.872.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Match: D7G3L5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3L5_ECTSI)

HSP 1 Score: 102 bits (254), Expect = 3.750e-24
Identity = 49/50 (98.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:    1 DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSMP 150
            DAAKLNSLHEAALLSLLHTRF NDDIYTYTGDVLISVNPYKTIPLLYSMP
Sbjct:  123 DAAKLNSLHEAALLSLLHTRFCNDDIYTYTGDVLISVNPYKTIPLLYSMP 172
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BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Match: F0YDF5_AURAN (Myosin motor domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDF5_AURAN)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-14
Identity = 34/50 (68.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSMP 150
            D AK+N LHEA LL+ L  R+  D IYTYTGDVL+SVNPYK+IPLLY +P
Sbjct:   59 DLAKMNQLHEAPLLTALGRRYKRDAIYTYTGDVLVSVNPYKSIPLLYDLP 108
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BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Match: A0A418BBA8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418BBA8_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-14
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSM 147
            D A++N++HEA L+S+LH R+VND IYT+T D+LISVNPYK+IP+LY +
Sbjct:  164 DMAQMNNMHEAPLMSVLHRRYVNDSIYTFTTDILISVNPYKSIPMLYDI 212
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BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Match: A0A024UE78_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UE78_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-14
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSM 147
            D A++N++HEA L+S+LH R+VND IYT+T D+LISVNPYK+IP+LY +
Sbjct:  119 DMAQMNNMHEAPLMSVLHRRYVNDSIYTFTTDILISVNPYKSIPMLYDI 167
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BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Match: A0A485LQX5_9STRA (Aste57867_22874 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQX5_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.120e-14
Identity = 32/49 (65.31%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSM 147
            D A++N++HEA LLS+LH R++ND IYT+T D+LISVNPYK+IPLLY +
Sbjct:  115 DIAQMNNMHEAPLLSVLHRRYLNDHIYTFTTDILISVNPYKSIPLLYDI 163
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BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Match: M4BXS7_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BXS7_HYAAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.530e-14
Identity = 31/50 (62.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSMP 150
            + A +++LHEA LL LLH R++ D IYTYTGD+LIS+NPYK IP+LY+ P
Sbjct:   61 NVAGMDNLHEAPLLDLLHRRYLQDQIYTYTGDILISINPYKNIPMLYNFP 110
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BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Match: A0A6G0XDA6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XDA6_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.850e-14
Identity = 31/49 (63.27%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSM 147
            D A++N++HEA LL++LH RF+N DIYT+T D+LIS+NPYK+IPLLY +
Sbjct:  114 DLAQMNNMHEAPLLAVLHRRFLNVDIYTFTTDILISINPYKSIPLLYDI 162
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BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Match: A0A2D4C1F9_PYTIN (Myosin-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1F9_PYTIN)

HSP 1 Score: 73.2 bits (178), Expect = 7.270e-14
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSM 147
            D A++N+LHEA LLS+L  RF +D IYT+T DVL+SVNPYKTIPLLY +
Sbjct:  130 DVAQINNLHEAPLLSVLRQRFESDAIYTFTADVLLSVNPYKTIPLLYDV 178
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BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Match: A0A5D6XLM8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLM8_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 7.680e-14
Identity = 28/50 (56.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSMP 150
            + +++++LH+A LL LL  R++ D IYTYTGD+LIS+NPYK IP+LY+ P
Sbjct:   58 NISEMDNLHQAPLLDLLRRRYLEDRIYTYTGDILISINPYKNIPMLYNFP 107
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BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Match: A0A0P1AQE4_PLAHL (Myosinlike protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AQE4_PLAHL)

HSP 1 Score: 72.8 bits (177), Expect = 9.930e-14
Identity = 30/50 (60.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    1 DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSMP 150
            + A++++LHEA LL LL  R++ D IYTYTGD+LIS+NPYK IP+LY+ P
Sbjct:   67 NVAEMDNLHEAPLLDLLRRRYLEDKIYTYTGDILISINPYKNIPMLYNFP 116
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110544.872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3L5_ECTSI3.750e-2498.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0YDF5_AURAN1.120e-1468.00Myosin motor domain-containing protein (Fragment) ... [more]
A0A418BBA8_9STRA1.120e-1463.27Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024UE78_9STRA1.120e-1463.27Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A485LQX5_9STRA1.120e-1465.31Aste57867_22874 protein n=1 Tax=Aphanomyces stella... [more]
M4BXS7_HYAAE1.530e-1462.00Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A6G0XDA6_9STRA2.850e-1463.27Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A2D4C1F9_PYTIN7.270e-1467.35Myosin-like protein n=1 Tax=Pythium insidiosum Tax... [more]
A0A5D6XLM8_9STRA7.680e-1456.00Uncharacterized protein (Fragment) n=1 Tax=Pythium... [more]
A0A0P1AQE4_PLAHL9.930e-1460.00Myosinlike protein n=1 Tax=Plasmopara halstedii Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110544contigH-elongata_contig110544:118..267 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue6.1e-20
Seed eggNOG ortholog2880.D7G3L5
KEGG koko:K10352,ko:K10357
KEGG Pathwayko04530,map04530
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5022@1,KOG0160@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03029,ko04131,ko04147,ko04812
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.6129377-CDS-H-elongata_contig110544:117..2671622929632.6129377-CDS-H-elongata_contig110544:117..267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110544 118..267 +
1691679099.141156-CDS-H-elongata_contig110544:117..2671691679099.141156-CDS-H-elongata_contig110544:117..267Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110544 118..267 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110544.872.1prot_H-elongata_contig110544.872.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110544 118..267 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110544.872.1

>prot_H-elongata_contig110544.872.1 ID=prot_H-elongata_contig110544.872.1|Name=mRNA_H-elongata_contig110544.872.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=50bp
DAAKLNSLHEAALLSLLHTRFVNDDIYTYTGDVLISVNPYKTIPLLYSMP
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mRNA from alignment at H-elongata_contig110544:118..267+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110544.872.1 ID=mRNA_H-elongata_contig110544.872.1|Name=mRNA_H-elongata_contig110544.872.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=150bp|location=Sequence derived from alignment at H-elongata_contig110544:118..267+ (Himanthalia elongata Himel1 dioecious)
GACGCGGCGAAGCTGAACAGCCTTCACGAGGCCGCGCTCCTCAGCCTCCT
TCACACGCGGTTCGTGAACGACGACATCTACACCTACACCGGGGACGTGC
TAATCTCCGTCAACCCTTACAAGACCATCCCTTTGCTTTACAGCATGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig110544:118..267+

>mRNA_H-elongata_contig110544.872.1 ID=mRNA_H-elongata_contig110544.872.1|Name=mRNA_H-elongata_contig110544.872.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at H-elongata_contig110544:118..267+ (Himanthalia elongata Himel1 dioecious)
GACGCGGCGAAGCTGAACAGCCTTCACGAGGCCGCGCTCCTCAGCCTCCT
TCACACGCGGTTCGTGAACGACGACATCTACACCTACACCGGGGACGTGC
TAATCTCCGTCAACCCTTACAAGACCATCCCTTTGCTTTACAGCATGCCC
GACGCGGCGAAGCTGAACAGCCTTCACGAGGCCGCGCTCCTCAGCCTCCT
TCACACGCGGTTCGTGAACGACGACATCTACACCTACACCGGGGACGTGC
TAATCTCCGTCAACCCTTACAAGACCATCCCTTTGCTTTACAGCATGCCC
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