mRNA_H-elongata_contig110521.871.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110521.871.1
Unique NamemRNA_H-elongata_contig110521.871.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110521.871.1 vs. uniprot
Match: D7FSH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSH6_ECTSI)

HSP 1 Score: 94.4 bits (233), Expect = 4.830e-24
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 RTMVTRSLPRAGGGHDDDHPHLVFDTPTKGPFTRTQAGVVVGGGVFLAIAIVVGAISHQQIKHG 192
            RT+V+RS+PRAGGGHDD HPHLVF+T  K PFT+  AG++VGGGVF  I IVVGAI+HQ  KHG
Sbjct:    2 RTIVSRSMPRAGGGHDD-HPHLVFET-AKEPFTKFSAGLIVGGGVFAGIGIVVGAITHQNYKHG 63
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BLAST of mRNA_H-elongata_contig110521.871.1 vs. uniprot
Match: A0A6H5JHE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHE0_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 6.300e-23
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 1 
Query:    1 RTMVTRSLPRAGGGHDDDHPHLVFDTPTKGPFTRTQAGVVVGGGVFLAIAIVVGAISHQQIKHG 192
            RT+VTRS+PRAGGGHDD HPHLVFDT  K PFT+  AG++VGG VF  I IVVGA++HQ  KHG
Sbjct:   19 RTIVTRSMPRAGGGHDD-HPHLVFDT-AKEPFTKFSAGLLVGGLVFSGIGIVVGAVTHQNYKHG 80
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BLAST of mRNA_H-elongata_contig110521.871.1 vs. uniprot
Match: A0A836CJR8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJR8_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 1.040e-5
Identity = 28/70 (40.00%), Postives = 40/70 (57.14%), Query Frame = 1 
Query:    1 RTMVTRSLPRAGGGHDDDHP-------HLVFDTPTKGPFTRTQAGVVVGGGVFLAIAIVVGAISHQQIKH 189
            R++ TR+LPR GGG             HLVF+   KGPFT+ Q  ++VGGG+ + I +V+ A   Q  K+
Sbjct:   23 RSIATRTLPRNGGGXXXXXXXXXXXXXHLVFE---KGPFTKRQGLILVGGGLTVGIGVVMLAFKLQLAKN 89
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110521.871.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FSH6_ECTSI4.830e-2470.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JHE0_9PHAE6.300e-2370.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJR8_9STRA1.040e-540.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110521contigH-elongata_contig110521:1266..2175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-11_003770.1
Exons2
Model size210
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110521.871.1prot_H-elongata_contig110521.871.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110521 1272..2175 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.5382977-UTR-H-elongata_contig110521:1265..12711622929632.5382977-UTR-H-elongata_contig110521:1265..1271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110521 1266..1271 +
1691679099.1151707-UTR-H-elongata_contig110521:1265..12711691679099.1151707-UTR-H-elongata_contig110521:1265..1271Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110521 1266..1271 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.5531404-CDS-H-elongata_contig110521:1271..13281622929632.5531404-CDS-H-elongata_contig110521:1271..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110521 1272..1328 +
1691679099.1258144-CDS-H-elongata_contig110521:1271..13281691679099.1258144-CDS-H-elongata_contig110521:1271..1328Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110521 1272..1328 +
1622929632.5647378-CDS-H-elongata_contig110521:2028..21751622929632.5647378-CDS-H-elongata_contig110521:2028..2175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110521 2029..2175 +
1691679099.1330543-CDS-H-elongata_contig110521:2028..21751691679099.1330543-CDS-H-elongata_contig110521:2028..2175Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110521 2029..2175 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110521.871.1

>prot_H-elongata_contig110521.871.1 ID=prot_H-elongata_contig110521.871.1|Name=mRNA_H-elongata_contig110521.871.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=68bp
MVTRSLPRAGGGHDDDHPHLVFDTPTKGPFTRTQAGVVVGGGVFLAIAIV
VGAISHQQIKHGEARRG*
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mRNA from alignment at H-elongata_contig110521:1266..2175+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110521.871.1 ID=mRNA_H-elongata_contig110521.871.1|Name=mRNA_H-elongata_contig110521.871.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=910bp|location=Sequence derived from alignment at H-elongata_contig110521:1266..2175+ (Himanthalia elongata Himel1 dioecious)
AGGACGATGGTGACGCGATCCCTGCCCCGTGCCGGAGGCGGGCACGACGA
CGACCACCCCCACGTGAGCCTTCCATGCGTCCTTCGTCGTTTACCGCATT
ATTTTGCACCGTAGTGCTGCTGTTGCTTATGTTTTTCTCTCGCGTGCAAG
CCTGCTGGTTGTCCAACCAAAGCTAGCTAGCTAGCAACACGGTCTGTGGC
ATCCCGCTTGCGGCTTGTGGCATACATAGGCTCGCCAGGGAAGAACTTTT
TTGACGTGCCACATCCATCGGCTCGTGGGGAGGCAGGCCTGATTTCTACT
AGAGATAAAAGGGGATATCGTCACTCTGTGGTCCTTTTTTTCGTGGTGAT
ATTTCTTATATTTTCCATTTTGTGATACTTTTCGCCATGCAGCCGCTGCT
CGCTAGCAGCACGGCCATGAACACGCACACGTCAGATTGTTGGCGGCCTC
GTTGTCGTGAAATGTTGTGCGGTGCAGTATGCGGGTTCACGAACACTGCT
AATAACACTGCTAATAGTTGTACAAATGTAAACAGCGGCACGCTTTATAA
TGCCATGGCGCGGTCGATTCGAAGATCTTTTTCGCCGTGCGCGCCCTGGA
AACAAACGCCACCAATCAATCGGGACTCGGCCAACGTTCTTTTGGAGGAA
TAAGAGAGAGAGAGAGGTGGGTTGCTCAGGAACATGAAAGGCCGTATCTG
TTGCGTCCGTTTCGTGACCTGTACTCTTGTGCCACGTGATCCGCTTGATC
CGATCCGCTTCAGCTGGTGTTCGACACCCCAACGAAGGGTCCATTCACGC
GGACGCAAGCGGGTGTTGTGGTGGGGGGCGGCGTGTTTCTGGCCATCGCA
ATCGTGGTCGGCGCTATCAGTCACCAGCAGATCAAGCACGGTGAGGCGCG
GAGAGGTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig110521:1266..2175+

>mRNA_H-elongata_contig110521.871.1 ID=mRNA_H-elongata_contig110521.871.1|Name=mRNA_H-elongata_contig110521.871.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=408bp|location=Sequence derived from alignment at H-elongata_contig110521:1266..2175+ (Himanthalia elongata Himel1 dioecious)
ATGGTGACGCGATCCCTGCCCCGTGCCGGAGGCGGGCACGACGACGACCA
CCCCCACATGGTGACGCGATCCCTGCCCCGTGCCGGAGGCGGGCACGACG
ACGACCACCCCCACCTGGTGTTCGACACCCCAACGAAGGGTCCATTCACG
CGGACGCAAGCGGGTGTTGTGGTGGGGGGCGGCGTGTTTCTGGCCATCGC
AATCGTGGTCGGCGCTATCAGTCACCAGCAGATCAAGCACGGTGAGGCGC
GGAGAGGTTGACTGGTGTTCGACACCCCAACGAAGGGTCCATTCACGCGG
ACGCAAGCGGGTGTTGTGGTGGGGGGCGGCGTGTTTCTGGCCATCGCAAT
CGTGGTCGGCGCTATCAGTCACCAGCAGATCAAGCACGGTGAGGCGCGGA
GAGGTTGA
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