mRNA_H-elongata_contig110516.869.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Match: A0A6H5KEX0_9PHAE (Isochorismatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEX0_9PHAE) HSP 1 Score: 162 bits (410), Expect = 3.830e-47 Identity = 79/118 (66.95%), Postives = 93/118 (78.81%), Query Frame = 1
Query: 10 VSGTSRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVGEGGERTNVPVFEKKLFSMCTDDVMSHMDALANKPTDVVLFGIEAHVCVTQTCLDLLERGYGVHIVCDGVSSQKVQSFSV 363
V T++FMLDVS+ L VPC+VTEQYPKALLHTV EL VG G ++ NVP+FEKKLFSMCT +V + L ++ D VLFGIEAHVCVTQTCLDLL+ GY VH+VCDGVSSQK +V
Sbjct: 39 VISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGNGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRK-DAVLFGIEAHVCVTQTCLDLLDLGYEVHVVCDGVSSQKPHDRAV 155
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Match: D7FJG0_ECTSI (Isochorismatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG0_ECTSI) HSP 1 Score: 163 bits (412), Expect = 1.120e-46 Identity = 79/118 (66.95%), Postives = 94/118 (79.66%), Query Frame = 1
Query: 10 VSGTSRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVGEGGERTNVPVFEKKLFSMCTDDVMSHMDALANKPTDVVLFGIEAHVCVTQTCLDLLERGYGVHIVCDGVSSQKVQSFSV 363
V T++FMLDVS+ L VPC+VTEQYPKALLHTV EL VG+G ++ NVP+FEKKLFSMCT +V + L ++ D VLFGIEAHVCVTQTCLDLL+ GY VH+VCDGVSSQK +V
Sbjct: 101 VISTAKFMLDVSQELEVPCIVTEQYPKALLHTVPELNVGKGPDQINVPIFEKKLFSMCTKEVEEELKKLPDRK-DAVLFGIEAHVCVTQTCLDLLDLGYDVHVVCDGVSSQKPHDRAV 217
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Match: A0A6U3TC81_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3TC81_9STRA) HSP 1 Score: 118 bits (295), Expect = 6.850e-30 Identity = 57/116 (49.14%), Postives = 80/116 (68.97%), Query Frame = 1
Query: 1 MFLVSGTSRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVGEGGERTNVPVFEKKLFSMCTDDVMSHMDALAN-KPTDVVLFGIEAHVCVTQTCLDLLERGYGVHIVCDGVSSQK 345
M V T++FM V+K L +PCV T+QY K T+ + T++PVFEKKLFSMCT++ H+ +L++ + T ++ GIEAHVC+ QTCLDLLE+G+ VHI+ DGVSSQ+
Sbjct: 35 METVINTTKFMTAVAKELQIPCVATQQYTKVFGPTIPDAIADPNDIGTSIPVFEKKLFSMCTEECSKHLASLSSSEKTSYLIVGIEAHVCLQQTCLDLLEQGHDVHIIADGVSSQQ 150
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Match: A0A6S7ZR19_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZR19_9STRA) HSP 1 Score: 117 bits (293), Expect = 1.360e-29 Identity = 61/115 (53.04%), Postives = 76/115 (66.09%), Query Frame = 1
Query: 19 TSRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVGEGGERTNVPVFEKKLFSMCTDDVMSHMDALANKPTDVVLFGIEAHVCVTQTCLDLLERGYGVHIVCDGVSSQKVQSFSV 363
TS M+ SK +G+PCVVTEQYPKAL HT SE+ G+ + VFEK LFSM T +V H+ L V+FG+E HVCV QT LDLLE+G+ VH++ DGVSSQ+ SV
Sbjct: 42 TSSIMVKASKIMGIPCVVTEQYPKALGHTCSEVLAGDTSPL--IKVFEKSLFSMMTPEVEQHLKDLNRN--SAVIFGVETHVCVQQTALDLLEKGWDVHVIVDGVSSQREFDRSV 152
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Match: A0A813L2S5_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813L2S5_POLGL) HSP 1 Score: 114 bits (284), Expect = 1.010e-28 Identity = 57/109 (52.29%), Postives = 77/109 (70.64%), Query Frame = 1
Query: 19 TSRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVGEGGERTNVPVFEKKLFSMCTDDVMSHMDALANKPTDVVLFGIEAHVCVTQTCLDLLERGYGVHIVCDGVSSQK 345
+++ M+ ++ VP +V+EQYPKAL HTVSEL + G VFEK FSMCT++ ++H+++L K VV+FG+E HVCV QT LDLL RGY VHI+ DGVSSQ+
Sbjct: 33 SAKTMVQGAEIFDVPLLVSEQYPKALGHTVSELNITRG------KVFEKTKFSMCTNEFLAHLESLGRKA--VVIFGVETHVCVQQTALDLLSRGYQVHILADGVSSQR 133
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Match: A0A6G0UJF7_9BILA (Isochorismatase domain-containing protein n=1 Tax=Halicephalobus sp. NKZ332 TaxID=2598192 RepID=A0A6G0UJF7_9BILA) HSP 1 Score: 114 bits (285), Expect = 1.830e-28 Identity = 58/109 (53.21%), Postives = 75/109 (68.81%), Query Frame = 1
Query: 22 SRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVGEGGERTNVPVFEKKLFSMCTDDVMSHMDALANKPTDVVLFGIEAHVCVTQTCLDLLERGYGVHIVCDGVSSQKV 348
SR ++D SK L VP V TEQYPK L H+V+ELG+ E N+ VF K FSMC ++++ ++ K ++VL GIEAHVCV QTCLDLL RGY VH+V D VSS+ +
Sbjct: 39 SRRLIDASKILNVPIVATEQYPKGLGHSVAELGLQEN----NIQVFSKMCFSMCANEILGKLEKEQVK--EIVLCGIEAHVCVYQTCLDLLSRGYTVHVVADAVSSRSM 141
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Match: A0A7S1Z0I8_TRICV (Hypothetical protein (Fragment) n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z0I8_TRICV) HSP 1 Score: 112 bits (279), Expect = 3.550e-28 Identity = 57/104 (54.81%), Postives = 72/104 (69.23%), Query Frame = 1
Query: 19 TSRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVGEGGERTNVPVFEKKLFSMCTDDVMSHMDALANKPTDVVLFGIEAHVCVTQTCLDLLERGYGVHIVCDG 330
T+RFM V+KALGVP V T+QY K TV++ + + + P+FEKKLFSM T +V H+ L + T VLFGIEAHVCV QT LDLLE+G+GVH+V DG
Sbjct: 47 TARFMTSVAKALGVPIVATQQYTKVFGPTVADC-FADPADLDSTPIFEKKLFSMMTPEVSEHVGGLGGR-TSFVLFGIEAHVCVQQTALDLLEQGHGVHVVVDG 148
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Match: A0A6V1K7V1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7V1_HETAK) HSP 1 Score: 112 bits (281), Expect = 1.460e-27 Identity = 59/119 (49.58%), Postives = 78/119 (65.55%), Query Frame = 1
Query: 10 VSGTSRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVG-----EGG--ERTNVPVFEKKLFSMCTDDVMSHMDALANKPTDVVLFGIEAHVCVTQTCLDLLERGYGVHIVCDGVSSQK 345
V TSR+++ +S+ LG+P + T+QY +A T E+ + E G + T++PVFEKKLFSM TD+V + +D VVLFG E HVCV QTCLDLLERG VH+V DG SSQ+
Sbjct: 35 VVNTSRYLVQISRELGIPVIATQQYTRAFGPTCPEIPLTAPEPEESGAPKATDIPVFEKKLFSMITDEVGTALDQCGPSLRSVVLFGQETHVCVQQTCLDLLERGLEVHVVADGCSSQR 153
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Match: A0A2P6VGK8_9CHLO (Isochorismatase domain-containing 2 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VGK8_9CHLO) HSP 1 Score: 112 bits (281), Expect = 1.600e-27 Identity = 64/115 (55.65%), Postives = 77/115 (66.96%), Query Frame = 1
Query: 19 TSRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVGEGGERTNVPVFEKKLFSMCTDDVMSHMDALANKPTDVVLFGIEAHVCVTQTCLDLLERGYGVHIVCDGVSSQKVQSFSV 363
TSR ML + AL +P +VTEQYPKAL +TV EL + PV K LFSMCTD+V + ++ L V++ GIE HVCV QTCLDLLERGY VHIV DGVSSQ++ SV
Sbjct: 73 TSRRMLRAASALQLPVIVTEQYPKALGNTVEEL---QPHIPPGSPVVAKTLFSMCTDEVNAALEGLP-AVKKVLIVGIETHVCVLQTCLDLLERGYEVHIVVDGVSSQRLGDRSV 183
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Match: A0A2P6TFH5_CHLSO (Isochorismatase domain-containing 2 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TFH5_CHLSO) HSP 1 Score: 112 bits (280), Expect = 2.200e-27 Identity = 62/115 (53.91%), Postives = 77/115 (66.96%), Query Frame = 1
Query: 19 TSRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVGEGGERTNVPVFEKKLFSMCTDDVMSHMDALANKPTDVVLFGIEAHVCVTQTCLDLLERGYGVHIVCDGVSSQKVQSFSV 363
TSR ML ++AL +P +VTEQYPKAL +TV EL + PV K FSMCTD+V + +D L + V++ GIE HVCV QT LDLLERGY VHI+ DGVSSQ++ SV
Sbjct: 71 TSRRMLRAAQALQLPVIVTEQYPKALGNTVEEL---REFIPADAPVVAKTKFSMCTDEVNAALDKLGSGVRKVLIVGIETHVCVLQTTLDLLERGYEVHILVDGVSSQRLGDRSV 182 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110516.869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig110516.869.1 >prot_H-elongata_contig110516.869.1 ID=prot_H-elongata_contig110516.869.1|Name=mRNA_H-elongata_contig110516.869.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=189bp MFLVSGTSRFMLDVSKALGVPCVVTEQYPKALLHTVSELGVGEGGERTNVback to top mRNA from alignment at H-elongata_contig110516:138..1948+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig110516.869.1 ID=mRNA_H-elongata_contig110516.869.1|Name=mRNA_H-elongata_contig110516.869.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1811bp|location=Sequence derived from alignment at H-elongata_contig110516:138..1948+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig110516:138..1948+ >mRNA_H-elongata_contig110516.869.1 ID=mRNA_H-elongata_contig110516.869.1|Name=mRNA_H-elongata_contig110516.869.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1134bp|location=Sequence derived from alignment at H-elongata_contig110516:138..1948+ (Himanthalia elongata Himel1 dioecious)back to top |