mRNA_H-elongata_contig110508.867.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110508.867.1
Unique NamemRNA_H-elongata_contig110508.867.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: D8LGU0_ECTSI (Polyribonucleotide nucleotidyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGU0_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 7.240e-35
Identity = 69/72 (95.83%), Postives = 69/72 (95.83%), Query Frame = 1 
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTV 216
            RASDKETLVSRLMDRPLRPAMHPGW HETQLLSWVLSYD  HPPVPLAITAASAALALSNVPLVRAIAGVTV
Sbjct:  101 RASDKETLVSRLMDRPLRPAMHPGWFHETQLLSWVLSYDTVHPPVPLAITAASAALALSNVPLVRAIAGVTV 172
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BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A835ZC49_9STRA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC49_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.620e-23
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1 
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTV 216
            RAS+KE LVSRL+DRPLRP +  GW HETQL++WV+SYD   PP PLAIT+ASA+L LS VP+ RA+AGVTV
Sbjct:   44 RASEKEVLVSRLIDRPLRPMIAQGWTHETQLITWVVSYDGSRPPEPLAITSASASLCLSQVPMRRAVAGVTV 115
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BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A2P6TLY3_CHLSO (Polyribonucleotide nucleotidyltransferase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TLY3_CHLSO)

HSP 1 Score: 95.5 bits (236), Expect = 3.250e-21
Identity = 47/77 (61.04%), Postives = 57/77 (74.03%), Query Frame = 1 
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 231
            R  D E LVSRL+DRP+RP +  GW H TQ+L+WVLSYD +H P PLAITAA AALA+S+VPL +A+AG  V    G
Sbjct:  178 RPKDHEVLVSRLIDRPIRPMIQSGWTHSTQVLTWVLSYDGQHSPEPLAITAAGAALAISDVPLSKAVAGARVGLLPG 254
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BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A5J4Y9P8_9CHLO (Polynucleotide phosphorylase n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y9P8_9CHLO)

HSP 1 Score: 91.7 bits (226), Expect = 2.020e-20
Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTV 216
            R+ + E LVSRL DRP+RP    GW  ETQ+L+WVLSYD +  P PLAITAASAALA+S++PL +A+AGV V
Sbjct:   84 RSRESEVLVSRLTDRPIRPMFEKGWNRETQVLTWVLSYDGEQSPEPLAITAASAALAVSDIPLKKAVAGVRV 155
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BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A2P6VEN8_9CHLO (Polyribonucleotide nucleotidyltransferase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VEN8_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 2.100e-20
Identity = 45/74 (60.81%), Postives = 56/74 (75.68%), Query Frame = 1 
Query:   10 DKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 231
            D E LV+RL+DRP+RP +  GW H TQ+L+WV+SYD +H P PLAITAA AALA+S+VPL RA+AG  V    G
Sbjct:   55 DHEVLVARLIDRPIRPMIQSGWTHSTQVLTWVMSYDGEHSPEPLAITAAGAALAISDVPLRRAVAGARVGLLPG 128
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BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A2R6X203_MARPO (Polyribonucleotide nucleotidyltransferase n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6X203_MARPO)

HSP 1 Score: 91.7 bits (226), Expect = 7.300e-20
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 231
            R  D E LV RL+DRP+RP +  G+ HETQ+LSWVLSYD  H P PLAITAA AALALS++P+ + +AGV V    G
Sbjct:  182 RTRDHEVLVCRLIDRPIRPMIAKGFNHETQILSWVLSYDGLHTPEPLAITAAGAALALSDIPIAKPVAGVRVGLIDG 258
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BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A176WHW8_MARPO (Endopeptidase Clp n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176WHW8_MARPO)

HSP 1 Score: 91.7 bits (226), Expect = 7.370e-20
Identity = 46/77 (59.74%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 231
            R  D E LV RL+DRP+RP +  G+ HETQ+LSWVLSYD  H P PLAITAA AALALS++P+ + +AGV V    G
Sbjct:  598 RTRDHEVLVCRLIDRPIRPMIAKGFNHETQILSWVLSYDGLHTPEPLAITAAGAALALSDIPIAKPVAGVRVGLIDG 674
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BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: D8UFR1_VOLCA (Polyribonucleotide nucleotidyltransferase n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8UFR1_VOLCA)

HSP 1 Score: 90.5 bits (223), Expect = 1.860e-19
Identity = 45/72 (62.50%), Postives = 55/72 (76.39%), Query Frame = 1 
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTV 216
            R  D E LVSRL+DRPLRP    GW +ETQ+L WVLSYD  H P P+AITAA+AAL +S++PL +A+AGV V
Sbjct:   52 RPRDSEVLVSRLVDRPLRPMFGKGWANETQVLEWVLSYDGIHNPEPIAITAAAAALLISDIPLKKAVAGVRV 123
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BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: I0YP49_COCSC (Polyribonucleotide nucleotidyltransferase n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YP49_COCSC)

HSP 1 Score: 90.1 bits (222), Expect = 2.550e-19
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 231
            R  D E L +RL+DRPLRP   PGW ++TQ+L WVLSYD  + P PLAITAA+AALA+S++PL +A+AGV V   +G
Sbjct:   52 RPKDGEVLTARLVDRPLRPMFAPGWANDTQVLIWVLSYDGINTPEPLAITAAAAALAISDIPLQKAVAGVRVGLLEG 128
[Close]
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Match: A0A8J9RF41_9CHLO (Probable polyribonucleotide nucleotidyltransferase n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RF41_9CHLO)

HSP 1 Score: 90.1 bits (222), Expect = 2.550e-19
Identity = 45/77 (58.44%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:    1 RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAITAASAALALSNVPLVRAIAGVTVSRAKG 231
            R  D E L +RL+DRPLRP   PGW ++TQ+L WVLSYD  + P PLAITAA+AALA+S++PL +A+AGV V   +G
Sbjct:  123 RPKDGEVLTARLVDRPLRPMFAPGWTNDTQVLIWVLSYDGINTPEPLAITAAAAALAISDIPLQKAVAGVRVGLLEG 199
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110508.867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGU0_ECTSI7.240e-3595.83Polyribonucleotide nucleotidyltransferase n=2 Tax=... [more]
A0A835ZC49_9STRA1.620e-2369.44Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A2P6TLY3_CHLSO3.250e-2161.04Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A5J4Y9P8_9CHLO2.020e-2062.50Polynucleotide phosphorylase n=1 Tax=Trebouxia sp.... [more]
A0A2P6VEN8_9CHLO2.100e-2060.81Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A2R6X203_MARPO7.300e-2059.74Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A176WHW8_MARPO7.370e-2059.74Endopeptidase Clp n=1 Tax=Marchantia polymorpha su... [more]
D8UFR1_VOLCA1.860e-1962.50Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
I0YP49_COCSC2.550e-1958.44Polyribonucleotide nucleotidyltransferase n=1 Tax=... [more]
A0A8J9RF41_9CHLO2.550e-1958.44Probable polyribonucleotide nucleotidyltransferase... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110508contigH-elongata_contig110508:1564..1794 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue1.3e-29
Seed eggNOG ortholog2880.D8LGU0
Preferred namePNP1
KEGG rclassRC02795
KEGG koko:K00962
KEGG ReactionR00437,R00438,R00439,R00440
KEGG Pathwayko00230,ko00240,ko03018,map00230,map00240,map03018
KEGG ModuleM00394
GOsGO:0000175,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0004654,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006109,GO:0006139,GO:0006396,GO:0006401,GO:0006629,GO:0006720,GO:0006721,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0008299,GO:0008408,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009267,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010322,GO:0010323,GO:0010467,GO:0010563,GO:0010565,GO:0010675,GO:0010677,GO:0015994,GO:0015995,GO:0016036,GO:0016070,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016119,GO:0016120,GO:0016122,GO:0016123,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019216,GO:0019220,GO:0019222,GO:0019438,GO:0019439,GO:0019747,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031425,GO:0031667,GO:0031668,GO:0031669,GO:0033013,GO:0033014,GO:0033554,GO:0034641,GO:0034655,GO:0042214,GO:0042440,GO:0042594,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045827,GO:0045833,GO:0045912,GO:0045936,GO:0046148,GO:0046246,GO:0046483,GO:0046700,GO:0046890,GO:0046983,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051055,GO:0051174,GO:0051186,GO:0051188,GO:0051716,GO:0062012,GO:0062014,GO:0065007,GO:0071071,GO:0071072,GO:0071496,GO:0071704,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1903725,GO:1903726
EggNOG free text desc.polyribonucleotide nucleotidyltransferase activity
EggNOG OGsCOG1185@1,KOG1067@2759
EC2.7.7.8
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPolyribonucleotide nucleotidyltransferase, RNA-binding domain
Ec32 orthologEc-28_001180.1
Exons1
Model size231
Cds size231
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929632.0151043-CDS-H-elongata_contig110508:1563..17941622929632.0151043-CDS-H-elongata_contig110508:1563..1794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110508 1564..1794 -
1691679098.8806338-CDS-H-elongata_contig110508:1563..17941691679098.8806338-CDS-H-elongata_contig110508:1563..1794Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110508 1564..1794 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110508.867.1prot_H-elongata_contig110508.867.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110508 1564..1794 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110508.867.1

>prot_H-elongata_contig110508.867.1 ID=prot_H-elongata_contig110508.867.1|Name=mRNA_H-elongata_contig110508.867.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=77bp
RASDKETLVSRLMDRPLRPAMHPGWKHETQLLSWVLSYDNKHPPVPLAIT
AASAALALSNVPLVRAIAGVTVSRAKG
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mRNA from alignment at H-elongata_contig110508:1564..1794-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110508.867.1 ID=mRNA_H-elongata_contig110508.867.1|Name=mRNA_H-elongata_contig110508.867.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=231bp|location=Sequence derived from alignment at H-elongata_contig110508:1564..1794- (Himanthalia elongata Himel1 dioecious)
AGAGCCTCCGACAAGGAGACTCTCGTGTCTCGGCTAATGGACCGCCCGCT
CAGGCCGGCCATGCACCCAGGCTGGAAGCACGAAACCCAGCTGCTATCGT
GGGTGCTGTCATACGACAACAAGCATCCCCCGGTGCCGCTGGCGATCACA
GCGGCTTCAGCTGCGCTGGCCCTGAGCAACGTGCCGCTCGTGCGCGCCAT
CGCAGGCGTTACGGTGAGCAGAGCGAAGGGA
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Coding sequence (CDS) from alignment at H-elongata_contig110508:1564..1794-

>mRNA_H-elongata_contig110508.867.1 ID=mRNA_H-elongata_contig110508.867.1|Name=mRNA_H-elongata_contig110508.867.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=462bp|location=Sequence derived from alignment at H-elongata_contig110508:1564..1794- (Himanthalia elongata Himel1 dioecious)
AGAGCCTCCGACAAGGAGACTCTCGTGTCTCGGCTAATGGACCGCCCGCT
CAGGCCGGCCATGCACCCAGGCTGGAAGCACGAAACCCAGCTGCTATCGT
GGGTGCTGTCATACGACAACAAGCATCCCCCGGTGCCGCTGGCGATCACA
GCGGCTTCAGCTGCGCTGGCCCTGAGCAACGTGCCGCTCGTGCGCGCCAT
CGCAGGCGTTACGGTGAGCAGAGCGAAGGGAAGAGCCTCCGACAAGGAGA
CTCTCGTGTCTCGGCTAATGGACCGCCCGCTCAGGCCGGCCATGCACCCA
GGCTGGAAGCACGAAACCCAGCTGCTATCGTGGGTGCTGTCATACGACAA
CAAGCATCCCCCGGTGCCGCTGGCGATCACAGCGGCTTCAGCTGCGCTGG
CCCTGAGCAACGTGCCGCTCGTGCGCGCCATCGCAGGCGTTACGGTGAGC
AGAGCGAAGGGA
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