mRNA_H-elongata_contig110440.863.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110440.863.1
Unique NamemRNA_H-elongata_contig110440.863.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Match: D8LS05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS05_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.020e-37
Identity = 64/80 (80.00%), Postives = 70/80 (87.50%), Query Frame = 2 
Query:  107 KDGGGEHGLGVVPINYLKDGKDPYIKPDGEYPEWLWKMQVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQNRSSKF 346
            KD  GEHGLGV PIN+LKDGKDP + PD EYPEWLW MQ+PSLARL+R KEDDYTL+EFRRFVQLD+REKIK QNRS KF
Sbjct:   27 KDSAGEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRTKEDDYTLDEFRRFVQLDSREKIKRQNRSGKF 106
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BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Match: A0A6H5JCL9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL9_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 1.920e-36
Identity = 62/76 (81.58%), Postives = 69/76 (90.79%), Query Frame = 2 
Query:  119 GEHGLGVVPINYLKDGKDPYIKPDGEYPEWLWKMQVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQNRSSKF 346
            GEHGLGV PIN+LKDGKDP + PD EYPEWLW MQ+PSLARL+RKKE+DYTL+EFRRFVQLD+REKIK QNRS KF
Sbjct:   71 GEHGLGVTPINFLKDGKDPSVMPDEEYPEWLWNMQLPSLARLKRKKEEDYTLDEFRRFVQLDSREKIKRQNRSGKF 146
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BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Match: A0A5N6P5K2_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P5K2_9ASTR)

HSP 1 Score: 73.2 bits (178), Expect = 1.390e-12
Identity = 36/67 (53.73%), Postives = 46/67 (68.66%), Query Frame = 2 
Query:  137 VVPINYLKDGKDPYIKPDGEYPEWLWKM--QVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQN 331
            VV  N LKDG DP I PD EYPEWLW++  + P+L+ LRRKK +    E+ +RFV+LD R +IK  N
Sbjct:   62 VVGANILKDGTDPKILPDSEYPEWLWRLLDKKPALSELRRKKIETLPYEDLKRFVKLDNRARIKENN 128
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BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Match: A0A0K9Q6Y4_SPIOL (Uncharacterized protein (Fragment) n=2 Tax=Spinacia oleracea TaxID=3562 RepID=A0A0K9Q6Y4_SPIOL)

HSP 1 Score: 72.4 bits (176), Expect = 2.810e-12
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 2 
Query:  137 VVPINYLKDGKDPYIKPDGEYPEWLWKM--QVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQN 331
            VV  N LKDG DP I+PD EYP+WLW++  + P+L+ L+RK+ +D   E+ +R+V+LD R +IK  N
Sbjct:   64 VVGANILKDGTDPKIRPDSEYPDWLWQLLDKRPALSELQRKEAEDLPFEDLKRYVKLDNRARIKENN 130
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BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Match: A0A2R6RJH1_ACTCC (54S ribosomal protein n=3 Tax=Actinidia TaxID=3624 RepID=A0A2R6RJH1_ACTCC)

HSP 1 Score: 72.0 bits (175), Expect = 3.210e-12
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 2 
Query:  137 VVPINYLKDGKDPYIKPDGEYPEWLWKM--QVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQNRSSK 343
            VV  N LKDG DP I PD EYP+WLW +  + P+L+ LRRKK +    E+ +RFV+LD R +IK QN S K
Sbjct:   56 VVGANILKDGADPKILPDSEYPDWLWHLLDKHPALSELRRKKIETLLYEDLKRFVKLDNRARIK-QNNSDK 125
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BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Match: A0A2P6R5P4_ROSCH (Putative ribosomal protein L37 n=2 Tax=Rosoideae TaxID=171638 RepID=A0A2P6R5P4_ROSCH)

HSP 1 Score: 71.6 bits (174), Expect = 4.470e-12
Identity = 48/108 (44.44%), Postives = 58/108 (53.70%), Query Frame = 2 
Query:   41 VLRRGMTAKGKGGGVCGVGT---------EVKDGGGEHGLGVVPINYLKDGKDPYIKPDGEYPEWLWKM--QVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQN 331
            V RR  +AK K GG  G G          EVK         VV  N LKDG DP I PD EYPEWLW +  + P+L+ LRRK  +    E+ +RFV+LD R +IK  N
Sbjct:   21 VGRRAFSAKAKKGGKGGAGDAPKASILDKEVKS------TTVVGANILKDGTDPKILPDSEYPEWLWHLIDKRPALSELRRKNIETLPYEDLKRFVKLDNRARIKENN 122
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BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Match: A0A484MBP3_9ASTE (Uncharacterized protein n=4 Tax=Cuscuta sect. Cleistogrammica TaxID=1824901 RepID=A0A484MBP3_9ASTE)

HSP 1 Score: 70.9 bits (172), Expect = 9.710e-12
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:  137 VVPINYLKDGKDPYIKPDGEYPEWLWKM--QVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQN 331
            VV  N LKDG DP + PD EYPEWLW +  + P+L+ LRRK  +    EE +RFV+LD R +IK  N
Sbjct:   61 VVGANILKDGTDPKVLPDSEYPEWLWHLLDKKPALSELRRKDLESLPYEELKRFVKLDNRARIKENN 127
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BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Match: A0A6A6MX44_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MX44_HEVBR)

HSP 1 Score: 68.6 bits (166), Expect = 1.740e-11
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 2 
Query:  137 VVPINYLKDGKDPYIKPDGEYPEWLWKM--QVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQN 331
            VV  N LKDG DP I PD EYP+WLW +  + P+L+ LRR+K +    E+ +RFV+LD R +IK  N
Sbjct:    6 VVGANILKDGADPKILPDSEYPDWLWHLLDKRPALSALRREKIETLPYEDLKRFVKLDNRARIKENN 72
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BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Match: UPI0002C332C3 (54S ribosomal protein L37, mitochondrial-like n=1 Tax=Fragaria vesca subsp. vesca TaxID=101020 RepID=UPI0002C332C3)

HSP 1 Score: 70.1 bits (170), Expect = 1.870e-11
Identity = 51/119 (42.86%), Postives = 63/119 (52.94%), Query Frame = 2 
Query:    8 DAGAAKNTTVVVLRRGMTAKGKGGGVCGVGT---------EVKDGGGEHGLGVVPINYLKDGKDPYIKPDGEYPEWLWKM--QVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQN 331
            DAGA     +V  RR ++AK K G   G G          EVK         VV  N LKDG DP I PD EYPEWLW +  + P+L+ LRRK  +    E+ +RFV+LD R +IK  N
Sbjct:   19 DAGA----VLVSGRRALSAKAKKGSKGGAGDAPKASILDKEVKS------TTVVGANILKDGTDPKILPDSEYPEWLWHLVDKRPALSELRRKDIETLPYEDLKRFVKLDNRARIKENN 127
[Close]
BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Match: UPI001CB9013D (54S ribosomal protein L37, mitochondrial-like n=2 Tax=Asteroideae TaxID=102804 RepID=UPI001CB9013D)

HSP 1 Score: 69.7 bits (169), Expect = 2.300e-11
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:  137 VVPINYLKDGKDPYIKPDGEYPEWLWKM--QVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQN 331
            VV  N LKDG DP I PD EYP+WLW +  + P+L+ LRRK  +    E+ +RFV+LD R +IK  N
Sbjct:   56 VVGANILKDGTDPKILPDSEYPDWLWHLLDKKPALSELRRKNIESLPYEDLKRFVKLDNRSRIKENN 122
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110440.863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS05_ECTSI1.020e-3780.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCL9_9PHAE1.920e-3681.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5N6P5K2_9ASTR1.390e-1253.73Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A0K9Q6Y4_SPIOL2.810e-1249.25Uncharacterized protein (Fragment) n=2 Tax=Spinaci... [more]
A0A2R6RJH1_ACTCC3.210e-1253.5254S ribosomal protein n=3 Tax=Actinidia TaxID=3624... [more]
A0A2P6R5P4_ROSCH4.470e-1244.44Putative ribosomal protein L37 n=2 Tax=Rosoideae T... [more]
A0A484MBP3_9ASTE9.710e-1252.24Uncharacterized protein n=4 Tax=Cuscuta sect. Clei... [more]
A0A6A6MX44_HEVBR1.740e-1150.75Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]
UPI0002C332C31.870e-1142.8654S ribosomal protein L37, mitochondrial-like n=1 ... [more]
UPI001CB9013D2.300e-1150.7554S ribosomal protein L37, mitochondrial-like n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110440contigH-elongata_contig110440:625..1874 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.5e-30
Seed eggNOG ortholog2880.D8LS05
Preferred nameMRPL54
KEGG koko:K17435
GOsGO:0000313,GO:0000315,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005762,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.mitochondrial translation
EggNOG OGsKOG3435@1,KOG3435@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L37, mitochondrial
Ec32 orthologEc-08_001630.1
Exons2
Model size815
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110440.863.1prot_H-elongata_contig110440.863.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110440 680..1408 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929631.6351047-UTR-H-elongata_contig110440:624..6791622929631.6351047-UTR-H-elongata_contig110440:624..679Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110440 625..679 +
1691679098.7566714-UTR-H-elongata_contig110440:624..6791691679098.7566714-UTR-H-elongata_contig110440:624..679Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110440 625..679 +
1622929631.6795917-UTR-H-elongata_contig110440:1408..18741622929631.6795917-UTR-H-elongata_contig110440:1408..1874Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110440 1409..1874 +
1691679098.7899287-UTR-H-elongata_contig110440:1408..18741691679098.7899287-UTR-H-elongata_contig110440:1408..1874Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110440 1409..1874 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929631.6495872-CDS-H-elongata_contig110440:679..8471622929631.6495872-CDS-H-elongata_contig110440:679..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110440 680..847 +
1691679098.7711062-CDS-H-elongata_contig110440:679..8471691679098.7711062-CDS-H-elongata_contig110440:679..847Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110440 680..847 +
1622929631.6651318-CDS-H-elongata_contig110440:1282..14081622929631.6651318-CDS-H-elongata_contig110440:1282..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110440 1283..1408 +
1691679098.7810183-CDS-H-elongata_contig110440:1282..14081691679098.7810183-CDS-H-elongata_contig110440:1282..1408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110440 1283..1408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110440.863.1

>prot_H-elongata_contig110440.863.1 ID=prot_H-elongata_contig110440.863.1|Name=mRNA_H-elongata_contig110440.863.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MTAKGKGGGVCGVGTEVKDGGGEHGLGVVPINYLKDGKDPYIKPDGEYPE
WLWKMQVPSLARLRRKKEDDYTLEEFRRFVQLDAREKIKLQNRSSKF*
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mRNA from alignment at H-elongata_contig110440:625..1874+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110440.863.1 ID=mRNA_H-elongata_contig110440.863.1|Name=mRNA_H-elongata_contig110440.863.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1250bp|location=Sequence derived from alignment at H-elongata_contig110440:625..1874+ (Himanthalia elongata Himel1 dioecious)
AGGTGGTGACGCTGGTGCAGCCAAAAATACGACCGTCGTTGTGCTTCGAA
GGGGAATGACGGCGAAAGGTAAGGGTGGAGGTGTATGTGGGGTTGGGACT
GAGGTCAAGGACGGCGGTGGTGAGCACGGGCTGGGAGTGGTCCCGATCAA
CTACCTCAAGGACGGCAAGGATCCTTATATCAAGCCTGACGGGGAGTACC
CGGAGTGGCTGTGGAAGATGCAGGTGCAGGCGGCAGTAATCCGTACCGAA
ACCGTTTCGATATGTGTATTGAGGACCCGAACGCTTCAATAGGACGGGCG
ACTGTCCCGCCCACTCATACGGCAAAATCGTTGAAACGACAGAAATCCGT
TCTCCGCTATAATATCGACAACGGGCGTGCAAAAACGTGGGTTCCATGTT
TGGTATCGTCCATCCGGGGTGGCACCCTGAACACCCCCCCCCCCCCCCCC
CCCCCCCCATATTTTTTAGTGGTTTTTCTTCCCTTTTTTTCCTCGCTTAA
AAAAAGTGGCCGGGTTTGGGCGGTTTGGGGGGNNNNNNNNNNGGGTTCCA
TGTTTGGTATCGTCCATCCGGGGTGGCACCCTGAACCCCCCCCCCCCCCG
ACCCCCCTGCTATATTTCTGAGTGTCTATCCTCCGCTATTTCCTCTCGCT
AAAAACAGGTGCCGAGTCTAGCGCGTTTGAGGCGTAAGAAGGAAGATGAC
TACACTCTCGAAGAATTCCGCCGATTTGTGCAACTCGACGCTCGAGAAAA
AATCAAGCTTCAGAACAGATCCTCCAAATTCTAGGTTGATTGTTCGAGTG
GTGGTGCTGTTCGGGAGTTGCTTGCTAGGTTGGCTTGGTTGAGGGGGGGG
TAGAATGTGTGTGTGTCTGAGGCGATACATCTACTCCATATAAAGTTTAT
ACTTCGACGTACACGAGCTGGCGATCGTTTGCTTTGTGACCACGGGCTGG
ATTTTGACATCAGCTTATGTGAGAATTTAATTGAAATCAAATTAAATTCA
AAAATTGTTTGGACCTAATTGCTTTTAGTTCCGTTAAACGCGTGCCGTGT
CAACGGGCATAGACCGCGCATGCATCCCAATCCAATGCCGGGACGGAGCG
ATGTACCAGGTTTTCGATGATGCCAAGACAGAATGCATGATATGATCATA
CATCCTTGGGTTTGCTAGGCCACACCGGACATGCCGACGGGTTAATTACA
TCATGGACACTGGACACACCGGGTAACCAAATATTGCATATTTCGCGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig110440:625..1874+

>mRNA_H-elongata_contig110440.863.1 ID=mRNA_H-elongata_contig110440.863.1|Name=mRNA_H-elongata_contig110440.863.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig110440:625..1874+ (Himanthalia elongata Himel1 dioecious)
ATGACGGCGAAAGGTAAGGGTGGAGGTGTATGTGGGGTTGGGACTGAGGT
CAAGGACGGCGGTGGTGAGCACGGGCTGGGAGTGGTCCCGATCAACTACC
TCAAGGACGGCAAGGATCCTTATATCAAGCCTGACGGGGAGTACCCGGAG
TGGCTGTGGAAGATGCAGATGACGGCGAAAGGTAAGGGTGGAGGTGTATG
TGGGGTTGGGACTGAGGTCAAGGACGGCGGTGGTGAGCACGGGCTGGGAG
TGGTCCCGATCAACTACCTCAAGGACGGCAAGGATCCTTATATCAAGCCT
GACGGGGAGTACCCGGAGTGGCTGTGGAAGATGCAGGTGCCGAGTCTAGC
GCGTTTGAGGCGTAAGAAGGAAGATGACTACACTCTCGAAGAATTCCGCC
GATTTGTGCAACTCGACGCTCGAGAAAAAATCAAGCTTCAGAACAGATCC
TCCAAATTCTAGGTGCCGAGTCTAGCGCGTTTGAGGCGTAAGAAGGAAGA
TGACTACACTCTCGAAGAATTCCGCCGATTTGTGCAACTCGACGCTCGAG
AAAAAATCAAGCTTCAGAACAGATCCTCCAAATTCTAG
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