prot_H-elongata_contig110418.860.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110418.860.1
Unique Nameprot_H-elongata_contig110418.860.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length39
Homology
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BLAST of mRNA_H-elongata_contig110418.860.1 vs. uniprot
Match: A0A6H5K1Z1_9PHAE (DHHA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z1_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.820e-9
Identity = 27/37 (72.97%), Postives = 29/37 (78.38%), Query Frame = 0 
Query:    2 DHNAASGNLEGLGDAVVEIVDHHMDLGKHAHVQVGAR 38
            DHNA SG L GLGDAVVEIVDHH+DLG+H  VQ   R
Sbjct:  242 DHNAVSGGLSGLGDAVVEIVDHHVDLGEHPSVQGSRR 278
[Close]
BLAST of mRNA_H-elongata_contig110418.860.1 vs. uniprot
Match: A0A835YL68_9STRA (DHHA2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL68_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.300e-6
Identity = 23/37 (62.16%), Postives = 26/37 (70.27%), Query Frame = 0 
Query:    2 DHNAASGNLEGLGDAVVEIVDHHMDLGKHAHVQVGAR 38
            DHNA S  L  L  AV+EIVDHH DLG+H+HV   AR
Sbjct:   94 DHNALSSGLASLDSAVLEIVDHHSDLGQHSHVSGAAR 130
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110418.860.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1Z1_9PHAE1.820e-972.97DHHA2 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835YL68_9STRA1.300e-662.16DHHA2 domain-containing protein n=1 Tax=Tribonema ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1640.10coord: 1..37
e-value: 9.1E-7
score: 30.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110418contigH-elongata_contig110418:1560..1676 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110418.860.1mRNA_H-elongata_contig110418.860.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110418 1560..1706 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110418.860.1 ID=prot_H-elongata_contig110418.860.1|Name=mRNA_H-elongata_contig110418.860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MDHNAASGNLEGLGDAVVEIVDHHMDLGKHAHVQVGAR*
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