mRNA_H-elongata_contig110418.860.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110418.860.1
Unique NamemRNA_H-elongata_contig110418.860.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110418.860.1 vs. uniprot
Match: A0A6H5K1Z1_9PHAE (DHHA2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K1Z1_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 4.190e-15
Identity = 37/48 (77.08%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 QAEGRLRLTLMDHNAASGNLEGLGDAVVEIVDHHMDLGKHAHVQVGAR 144
            QAEGRLRLTL DHNA SG L GLGDAVVEIVDHH+DLG+H  VQ   R
Sbjct:  231 QAEGRLRLTLTDHNAVSGGLSGLGDAVVEIVDHHVDLGEHPSVQGSRR 278
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BLAST of mRNA_H-elongata_contig110418.860.1 vs. uniprot
Match: A0A835YL68_9STRA (DHHA2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL68_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 2.030e-9
Identity = 29/47 (61.70%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    4 AEGRLRLTLMDHNAASGNLEGLGDAVVEIVDHHMDLGKHAHVQVGAR 144
            + GRL LTL DHNA S  L  L  AV+EIVDHH DLG+H+HV   AR
Sbjct:   84 SSGRLCLTLTDHNALSSGLASLDSAVLEIVDHHSDLGQHSHVSGAAR 130
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BLAST of mRNA_H-elongata_contig110418.860.1 vs. uniprot
Match: A0A7S2Y125_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y125_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.030e-6
Identity = 24/45 (53.33%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:   10 GRLRLTLMDHNAASGNLEGLGDAVVEIVDHHMDLGKHAHVQVGAR 144
            GRLRLTL+DHN  S +   L   V+E+VDHH DLG++  V  G R
Sbjct:  147 GRLRLTLVDHNCLSADKRFLDQCVLEVVDHHQDLGEYPWVSGGQR 191
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BLAST of mRNA_H-elongata_contig110418.860.1 vs. uniprot
Match: A0A1V9YQ66_9STRA (DHHA2 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQ66_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.780e-6
Identity = 24/43 (55.81%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:   16 LRLTLMDHNAASGNLEGLGDAVVEIVDHHMDLGKHAHVQVGAR 144
            LRL L DHN    +   LG+ VVEI+DHH DLG H HV   AR
Sbjct:  115 LRLVLTDHNKLKKDYLNLGELVVEIIDHHADLGAHGHVTGAAR 157
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BLAST of mRNA_H-elongata_contig110418.860.1 vs. uniprot
Match: A0A1V9ZVJ6_9STRA (DHHA2 domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVJ6_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.700e-5
Identity = 22/42 (52.38%), Postives = 25/42 (59.52%), Query Frame = 1 
Query:    4 AEGRLRLTLMDHNAASGNLEGLGDAVVEIVDHHMDLGKHAHV 129
            A   L+L L DHN      E L  AV+EI+DHH DLG H HV
Sbjct:  107 ASNALKLILTDHNKLKQEYEALDSAVMEIIDHHDDLGAHTHV 148
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BLAST of mRNA_H-elongata_contig110418.860.1 vs. uniprot
Match: A0A5D6XS18_9STRA (DHHA2 domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XS18_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 8.770e-5
Identity = 27/44 (61.36%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:   13 RLRLTLMDHNAASGNLEGLGDAV---VEIVDHHMDLGKHAHVQV 135
            RL  TL+DHNA S    G G AV   VEI+DHHMDLGKHA   V
Sbjct:  138 RLEFTLLDHNALSTKRMG-GHAVGRVVEILDHHMDLGKHADAAV 180
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110418.860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K1Z1_9PHAE4.190e-1577.08DHHA2 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A835YL68_9STRA2.030e-961.70DHHA2 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A7S2Y125_9STRA2.030e-653.33Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1V9YQ66_9STRA2.780e-655.81DHHA2 domain-containing protein n=1 Tax=Achlya hyp... [more]
A0A1V9ZVJ6_9STRA4.700e-552.38DHHA2 domain-containing protein n=1 Tax=Thraustoth... [more]
A0A5D6XS18_9STRA8.770e-561.36DHHA2 domain-containing protein n=1 Tax=Pythium br... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110418contigH-elongata_contig110418:1560..1706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue2.7e-07
Seed eggNOG ortholog2880.D8LQ18
Preferred namePRUNE2
KEGG rclassRC00002
KEGG koko:K01230,ko:K01514,ko:K18449
KEGG ReactionR03409,R05982,R06722
KEGG Pathwayko00230,ko00510,ko00513,ko01100,ko04141,map00230,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
GOsGO:0003674,GO:0003824,GO:0004309,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006082,GO:0006091,GO:0006112,GO:0006793,GO:0006797,GO:0006798,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0015980,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0031974,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0044237,GO:0044248,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:1901575
EggNOG free text desc.pyrophosphatase activity
EggNOG OGsCOG1227@1,KOG4129@2759
EC3.2.1.113,3.6.1.11
COG Functional cat.C
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size147
Cds size117
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929631.0693583-CDS-H-elongata_contig110418:1559..16761622929631.0693583-CDS-H-elongata_contig110418:1559..1676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110418 1560..1676 -
1691679098.5399656-CDS-H-elongata_contig110418:1559..16761691679098.5399656-CDS-H-elongata_contig110418:1559..1676Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110418 1560..1676 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929631.0828233-UTR-H-elongata_contig110418:1676..17061622929631.0828233-UTR-H-elongata_contig110418:1676..1706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110418 1677..1706 -
1691679098.552588-UTR-H-elongata_contig110418:1676..17061691679098.552588-UTR-H-elongata_contig110418:1676..1706Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110418 1677..1706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110418.860.1prot_H-elongata_contig110418.860.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110418 1560..1676 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110418.860.1

>prot_H-elongata_contig110418.860.1 ID=prot_H-elongata_contig110418.860.1|Name=mRNA_H-elongata_contig110418.860.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=39bp
MDHNAASGNLEGLGDAVVEIVDHHMDLGKHAHVQVGAR*
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mRNA from alignment at H-elongata_contig110418:1560..1706-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110418.860.1 ID=mRNA_H-elongata_contig110418.860.1|Name=mRNA_H-elongata_contig110418.860.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=147bp|location=Sequence derived from alignment at H-elongata_contig110418:1560..1706- (Himanthalia elongata Himel1 dioecious)
CAGGCCGAGGGAAGGCTGAGACTGACCCTGATGGACCACAATGCCGCCTC
GGGTAACCTCGAAGGGCTCGGCGATGCCGTGGTCGAGATCGTAGACCACC
ACATGGATCTCGGGAAGCATGCGCACGTCCAAGTGGGGGCAAGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig110418:1560..1706-

>mRNA_H-elongata_contig110418.860.1 ID=mRNA_H-elongata_contig110418.860.1|Name=mRNA_H-elongata_contig110418.860.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at H-elongata_contig110418:1560..1706- (Himanthalia elongata Himel1 dioecious)
ATGGACCACAATGCCGCCTCGGGTAACCTCGAAGGGCTCGGCGATGCCGT
GGTCGAGATCGTAGACCACCACATGGATCTCGGGAAGCATGCGCACGTCC
AAGTGGGGGCAAGGTAAATGGACCACAATGCCGCCTCGGGTAACCTCGAA
GGGCTCGGCGATGCCGTGGTCGAGATCGTAGACCACCACATGGATCTCGG
GAAGCATGCGCACGTCCAAGTGGGGGCAAGGTAA
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