mRNA_H-elongata_contig1104.857.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1104.857.1
Unique NamemRNA_H-elongata_contig1104.857.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1104.857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1104contigH-elongata_contig1104:15336..15907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size572
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1104.857.1prot_H-elongata_contig1104.857.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1104 15363..15779 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.8138077-UTR-H-elongata_contig1104:15335..153621622929630.8138077-UTR-H-elongata_contig1104:15335..15362Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1104 15336..15362 +
1691679098.4623578-UTR-H-elongata_contig1104:15335..153621691679098.4623578-UTR-H-elongata_contig1104:15335..15362Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1104 15336..15362 +
1622929630.8528097-UTR-H-elongata_contig1104:15779..159071622929630.8528097-UTR-H-elongata_contig1104:15779..15907Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1104 15780..15907 +
1691679098.4798305-UTR-H-elongata_contig1104:15779..159071691679098.4798305-UTR-H-elongata_contig1104:15779..15907Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1104 15780..15907 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.8321846-CDS-H-elongata_contig1104:15362..157791622929630.8321846-CDS-H-elongata_contig1104:15362..15779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1104 15363..15779 +
1691679098.471279-CDS-H-elongata_contig1104:15362..157791691679098.471279-CDS-H-elongata_contig1104:15362..15779Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1104 15363..15779 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1104.857.1

>prot_H-elongata_contig1104.857.1 ID=prot_H-elongata_contig1104.857.1|Name=mRNA_H-elongata_contig1104.857.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MMVPSTSLLRTRTSNSSWASGRSHSSLLYCLRRRHTSRARRMISMKVDGH
QGWYLRGIRSSLFRVLLADDCDPDIWHFCVRCRIHIDSVFFFNTLLTKRY
VHTSATMPIYFTRPFKNPEGRVIILNHSTNALYHCAQR*
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mRNA from alignment at H-elongata_contig1104:15336..15907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1104.857.1 ID=mRNA_H-elongata_contig1104.857.1|Name=mRNA_H-elongata_contig1104.857.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=572bp|location=Sequence derived from alignment at H-elongata_contig1104:15336..15907+ (Himanthalia elongata Himel1 dioecious)
GTAAATGACCGCGTCACGCATCAATATATGATGGTCCCCAGCACTTCCCT
TTTGAGAACTCGTACCTCAAACTCGAGTTGGGCTAGCGGTCGGTCGCACA
GCTCTCTGCTTTATTGCTTAAGGCGCCGTCATACCAGCCGTGCCCGCAGA
ATGATATCAATGAAGGTGGACGGGCATCAGGGATGGTACCTTCGGGGGAT
ACGTTCGTCGCTGTTTCGCGTACTTTTGGCCGACGACTGTGATCCTGATA
TTTGGCATTTTTGTGTGCGGTGCCGCATACACATAGATTCCGTATTTTTC
TTCAACACACTTTTAACGAAACGTTATGTACACACATCGGCAACAATGCC
TATATATTTTACGAGGCCCTTCAAAAACCCTGAAGGAAGAGTCATCATTT
TAAACCACAGCACCAACGCCTTGTATCATTGTGCCCAGAGATGACAAATG
GGGAAAGGAGGTAGAGTTACAGCTGCACTCTGCAGAACCGGCTGATTGTA
CGGCTCGATGGCGGGGTTTGGTTTGGGTGGATAGTTGTGGGACAGGTCCT
TCGTCAAGGATGCGTGCCTCCG
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Coding sequence (CDS) from alignment at H-elongata_contig1104:15336..15907+

>mRNA_H-elongata_contig1104.857.1 ID=mRNA_H-elongata_contig1104.857.1|Name=mRNA_H-elongata_contig1104.857.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig1104:15336..15907+ (Himanthalia elongata Himel1 dioecious)
ATGATGGTCCCCAGCACTTCCCTTTTGAGAACTCGTACCTCAAACTCGAG
TTGGGCTAGCGGTCGGTCGCACAGCTCTCTGCTTTATTGCTTAAGGCGCC
GTCATACCAGCCGTGCCCGCAGAATGATATCAATGAAGGTGGACGGGCAT
CAGGGATGGTACCTTCGGGGGATACGTTCGTCGCTGTTTCGCGTACTTTT
GGCCGACGACTGTGATCCTGATATTTGGCATTTTTGTGTGCGGTGCCGCA
TACACATAGATTCCGTATTTTTCTTCAACACACTTTTAACGAAACGTTAT
GTACACACATCGGCAACAATGCCTATATATTTTACGAGGCCCTTCAAAAA
CCCTGAAGGAAGAGTCATCATTTTAAACCACAGCACCAACGCCTTGTATC
ATTGTGCCCAGAGATGAATGATGGTCCCCAGCACTTCCCTTTTGAGAACT
CGTACCTCAAACTCGAGTTGGGCTAGCGGTCGGTCGCACAGCTCTCTGCT
TTATTGCTTAAGGCGCCGTCATACCAGCCGTGCCCGCAGAATGATATCAA
TGAAGGTGGACGGGCATCAGGGATGGTACCTTCGGGGGATACGTTCGTCG
CTGTTTCGCGTACTTTTGGCCGACGACTGTGATCCTGATATTTGGCATTT
TTGTGTGCGGTGCCGCATACACATAGATTCCGTATTTTTCTTCAACACAC
TTTTAACGAAACGTTATGTACACACATCGGCAACAATGCCTATATATTTT
ACGAGGCCCTTCAAAAACCCTGAAGGAAGAGTCATCATTTTAAACCACAG
CACCAACGCCTTGTATCATTGTGCCCAGAGATGA
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