mRNA_H-elongata_contig110362.854.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110362.854.1
Unique NamemRNA_H-elongata_contig110362.854.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110362.854.1 vs. uniprot
Match: A0A6H5KPG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPG2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 1.220e-21
Identity = 42/53 (79.25%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 AELFYRRALAANDLDPLVLANFRSFCLERLPNGAYPGGGPGSRVLKRSRLEEE 159
            AE+FYRRA+AANDLDP VLAN++SFC+ERLP G YPGGGPGSRVL+RSRL+ E
Sbjct:  475 AEMFYRRAIAANDLDPHVLANYKSFCMERLPGGRYPGGGPGSRVLRRSRLDGE 527
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BLAST of mRNA_H-elongata_contig110362.854.1 vs. uniprot
Match: D7FZX1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZX1_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 8.250e-21
Identity = 40/52 (76.92%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    4 ELFYRRALAANDLDPLVLANFRSFCLERLPNGAYPGGGPGSRVLKRSRLEEE 159
            +LFYRRA+AANDLDP VLAN++SFC+ERLP G YPGGGPGSR+L+RSRL+ E
Sbjct: 1763 QLFYRRAIAANDLDPHVLANYKSFCMERLPGGLYPGGGPGSRILRRSRLDGE 1814
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110362.854.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KPG2_9PHAE1.220e-2179.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZX1_ECTSI8.250e-2176.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110362contigH-elongata_contig110362:472..636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.4
Seed ortholog evalue1.8e-17
Seed eggNOG ortholog2880.D7FZX1
EggNOG OGs2CZ96@1,2S95Y@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_003770.2
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929630.4545712-CDS-H-elongata_contig110362:471..6361622929630.4545712-CDS-H-elongata_contig110362:471..636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110362 472..636 +
1691679098.3073957-CDS-H-elongata_contig110362:471..6361691679098.3073957-CDS-H-elongata_contig110362:471..636Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110362 472..636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110362.854.1prot_H-elongata_contig110362.854.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110362 472..636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110362.854.1

>prot_H-elongata_contig110362.854.1 ID=prot_H-elongata_contig110362.854.1|Name=mRNA_H-elongata_contig110362.854.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
AELFYRRALAANDLDPLVLANFRSFCLERLPNGAYPGGGPGSRVLKRSRL
EEEK*
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mRNA from alignment at H-elongata_contig110362:472..636+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110362.854.1 ID=mRNA_H-elongata_contig110362.854.1|Name=mRNA_H-elongata_contig110362.854.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig110362:472..636+ (Himanthalia elongata Himel1 dioecious)
GCAGAGCTATTCTACCGCAGAGCTCTTGCGGCGAACGATCTCGACCCTCT
GGTCCTGGCAAACTTCAGGAGCTTTTGCCTCGAGCGCCTCCCAAATGGAG
CGTATCCTGGAGGGGGGCCAGGGTCGAGGGTGCTCAAGAGATCGCGACTG
GAAGAAGAAAAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig110362:472..636+

>mRNA_H-elongata_contig110362.854.1 ID=mRNA_H-elongata_contig110362.854.1|Name=mRNA_H-elongata_contig110362.854.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig110362:472..636+ (Himanthalia elongata Himel1 dioecious)
GCAGAGCTATTCTACCGCAGAGCTCTTGCGGCGAACGATCTCGACCCTCT
GGTCCTGGCAAACTTCAGGAGCTTTTGCCTCGAGCGCCTCCCAAATGGAG
CGTATCCTGGAGGGGGGCCAGGGTCGAGGGTGCTCAAGAGATCGCGACTG
GAAGAAGAAAAGTAGGCAGAGCTATTCTACCGCAGAGCTCTTGCGGCGAA
CGATCTCGACCCTCTGGTCCTGGCAAACTTCAGGAGCTTTTGCCTCGAGC
GCCTCCCAAATGGAGCGTATCCTGGAGGGGGGCCAGGGTCGAGGGTGCTC
AAGAGATCGCGACTGGAAGAAGAAAAGTAG
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