mRNA_H-elongata_contig11031.850.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11031.850.1
Unique NamemRNA_H-elongata_contig11031.850.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Match: A0A1X6NQQ7_PORUM (IU_nuc_hydro domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NQQ7_PORUM)

HSP 1 Score: 244 bits (624), Expect = 2.190e-68
Identity = 139/328 (42.38%), Postives = 191/328 (58.23%), Query Frame = 2 
Query:    5 RNFYNTMFLHGVTDVPILSGSPYAIVEEEAAEGTGRNPETDYRAVVPA--DNLLWSDTLWGLSVFLPQSSNYYDPLTNSYDDNSSVPLLAEMVESLGDNETVTFLSVGTLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAVNVSGNLFTSPNNSNAEFNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTEIPGNPEAAFTGAMLERVRATWFDPDVFFETIFLWDPTAAILLFNRSGINEGGSSTIPMKVITDQGVYGDEQGATRECTADEAVDDSLCASVEVVTEVDGDVINTILLEILQSEVNSAVIHLAC 982
            RNFYN ++LHGVTDVP+L GS  A+ +E  A GTG  P   YR  +P   D  L++DT+WG +  LPQS   YD       D+ S+P L  ++  L     + +LSVGTLT +AK+F       L  +L ++  L +MGGAV+V+GNLF+ PNN+ AEFN+YNDP  A       +  G+ + +V LDAT D  ++  L   L + P  PEA F G ++E++R TWFDP  FF T +LWDPTAAI+L     +    +S   +KV+ D G  GD  G T+ C A E        SV VV +V+G  +N  +  +LQ+ VN+AV  L C
Sbjct:   70 RNFYNLLYLHGVTDVPVLIGSHVALSDERDANGTGLGPRLRYRDTIPVGPDGFLYADTVWGAAHLLPQSFRAYDVEGTPDTDDQSIPALLAVLAGLPIGRRIEWLSVGTLTMVAKLFRPPYAAALAPLLPRIQSLTIMGGAVDVAGNLFSLPNNTVAEFNMYNDPLGAHVGMAAAAAAGIPVRLVPLDATSDAPIARALLAALRDAPATPEAQFVGVVMEKLRRTWFDPPSFFSTAYLWDPTAAIVLHAPWVVTN--ASVTQVKVV-DDGPRGDLTGWTKRCDAAEVAAGECFPSV-VVYDVNGGAVNKQVERLLQAPVNAAVRSLLC 393
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BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Match: L8GQ41_ACACA (Inosineuridine preferring nucleoside hydrolase family protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQ41_ACACA)

HSP 1 Score: 105 bits (262), Expect = 1.850e-20
Identity = 92/277 (33.21%), Postives = 132/277 (47.65%), Query Frame = 2 
Query:    5 RNFYNTMFLHGVTDVPILSGSPYAIVEEEAAEGTGRNPETDYRAVVPA--DNLLWSDTLWGLSVFLPQSS----NYYDPLTNSYDDNSSVPLLAEMVESLGDNETVTFLSVGTLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAVNVSGNLFTSPNN---SNAEFNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTE-IPGNPEAAFTGAMLERVRATWFDPDVFFETIFLWDPTAAILLFNRSGINEGGSSTIPMKVITDQ 805
            +N +  +      DVP+ +G  YA  E ++      N    Y+  VP      +W+DT  GL+   P+ +    NYY      YD      L   M E  G    + FLS+GTLT I  +F      R   +  +VD + +MGGAVNV GNLF    N   + AE NIY DP +A+  F+     GV IT++ LDATDD  ++++    L +      EA +  A+L  ++A       F   I LWDP AA +L + S + E    T+ M V+ DQ
Sbjct:   99 QNLFGLLAYMDRDDVPVWAGEAYASAELDSG-----NYSCKYQKTVPLFPRGKVWADTAVGLNQRYPRLTDPQRNYYPGFPQVYD-----RLPQAMAEIDGP---IVFLSLGTLTEIDYLF-----RRFPELKQRVDRIYIMGGAVNVPGNLFFPRGNVPNTYAECNIYLDPESARNVFIS----GVPITLIPLDATDDFPIADDFIAELGQKARRTKEAGWVHALLATIKA-------FGSNISLWDPLAAGVLADPSIVVE--QVTVNMTVVIDQ 344
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BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Match: A0A6F8T069_9GAMM (IU_nuc_hydro domain-containing protein n=1 Tax=Legionella antarctica TaxID=2708020 RepID=A0A6F8T069_9GAMM)

HSP 1 Score: 96.3 bits (238), Expect = 1.390e-17
Identity = 87/281 (30.96%), Postives = 138/281 (49.11%), Query Frame = 2 
Query:    5 RNFYNTMFLHGVTDVPILSGSPYAIVEEEAAEGTGRNPETDYRAVVPADNLLWSDTLWGLSVFLPQSSNYYDPLTNSYDDNSSVPLLAEMVESLGDNETVTFLSVGTLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAVNVSGN---LFTSPNNSNAEFNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTEIPGNPEAAFTGAMLERVRATWFDPDVFFETIFLWDPTAAILLFN-RSGINEGGSSTIPMKVITDQGVYGDEQGAT 835
             N     FL G+ ++PI  GS      EE+ + +G+ P  +Y     ADNL        L + LP+  N    +TNS     +V LL + +E    NE +  L+ G LT IA++     +   E    K++ +V+MGGAV++ GN   L T  NN+ AE+NIY DP AA   F       + IT+V LDAT+ V +++E FD+L      P       ML+++       + F +   LWDP AA++  + +  I E     + ++    + V G+E+ ++
Sbjct:   46 ENMAKVCFLLGIPEIPIAYGS------EESCDSSGK-PFPEYIRT-EADNLF-------LGIELPKHPN--PNITNS-----AVDLLVKTLED--SNERIAILATGPLTNIAELIKKYPQLAKE----KIEKIVIMGGAVHIEGNIKALDTKSNNTVAEWNIYADPKAADIVF----SSTIPITLVPLDATNQVPMTKEFFDSLIH-KQQPALKLIYQMLKKLIDD-LSMETFLQQFCLWDPLAAMICIDPQIAITERMLLAVDLETAQTKHVSGNEKNSS 292
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BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Match: A0A397T1W4_9GLOM (Inosine/uridine-preferring nucleoside hydrolase domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T1W4_9GLOM)

HSP 1 Score: 94.4 bits (233), Expect = 8.080e-17
Identity = 71/236 (30.08%), Postives = 114/236 (48.31%), Query Frame = 2 
Query:   44 DVPILSGSPYAIVEEEAAEGTGRNPETDYRAVVPADNLLWSDTLWGLSVFLPQSSN-YYDPLTNSYDDNSSVPLLAEMVESLGDNETVTFLSVGTLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAVNVSGNLFTSPNNSNAEFNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTEIPGNPEAAFTGAMLERVRATWFDPD-VFFETIFLWDPTAAILLFN 745
            ++P++ G+ Y + E +    T  +P   Y+  V  +    +D L+GL+  L  S   +YD L       +   L+   ++  G   T+  ++ G +T IA                +++ +V MGGA++V GNLFT PNN+ AEFN+Y D  AAQ+         ++I +V LD T+   L+   FD L+++       FT  +L   RA  F  D  F+   FLWDP A  ++ N
Sbjct:   84 NLPVILGANYDLFESDRNPKTLGSPGCFYQKSVSENARRDTDLLYGLNRQLRLSKRIWYDALVGFNITKNFADLIDSTIKQTGKKPTI--IATGPVTNIATFL-----RAFPTYTKRIEKIVWMGGAIDVPGNLFTVPNNTRAEFNVYLDCVAAQELLAS----DLNILLVPLDFTNKTPLNPGFFDKLSKLTSF-YGKFTYKLLSTARAASFGSDSAFYNAYFLWDPKAVAVVKN 307
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BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Match: A0A397W480_9GLOM (Inosine/uridine-preferring nucleoside hydrolase domain-containing protein n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397W480_9GLOM)

HSP 1 Score: 91.3 bits (225), Expect = 8.980e-16
Identity = 69/238 (28.99%), Postives = 114/238 (47.90%), Query Frame = 2 
Query:   44 DVPILSGSPYAIVEEEAAEGTGRNPETDYRAVVPAD--NLLWSDTLWGLSVFLPQSSN-YYDPLTNSYDDNSSVPLLAEMVESLGDNETVTFLSVGTLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAVNVSGNLFTSPNNSNAEFNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTEIPGNPEAAFTGAMLERVRATWFDPDV-FFETIFLWDPTAAILLFN 745
            ++P++ G+ Y++ E +    +   P   Y+  VPA        D L+GL+  L  S   +Y+ +           L+   ++  G   T+  +  G  T IA +             +K+D +  M GA++V GNLF+ PNN++AEFN++ D  AAQ+         + IT++ LD T    L+   FD L+++       F   +L  +R+TWF  D  FF   +LWDPTA  ++ N
Sbjct:   87 NLPVILGADYSLYETDKNPDSLGTPGCLYQKTVPAGAGGKRDQDLLYGLNRQLRLSKRIWYNAIKGFNITKDYANLIDSTIKQTGKKPTI--IMTGPATNIATLL-----RAFPNYTAKIDKVFWMSGALDVPGNLFSLPNNTHAEFNVFFDCVAAQELLAS----NLDITLIPLDYTSKTPLNIAFFDKLSKLKSF-YGIFIYKLLSMIRSTWFGGDTAFFTRYYLWDPTAISVVKN 312
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BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Match: UPI0019B4080F (Nucleoside hydrolase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI0019B4080F)

HSP 1 Score: 89.4 bits (220), Expect = 1.710e-15
Identity = 82/275 (29.82%), Postives = 131/275 (47.64%), Query Frame = 2 
Query:    5 RNFYNTMFLHGVTDVPILSGSPYAIVEEEAAEGTGRNPETDYRAVVPADNLLWSDTLWGLSVFLPQSSNYYDPLTNSYDDNSSVPLLAEMVESLGDNETVTFLSVGTLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAVNVSGNLFTSPNNSN--AEFNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTEIPGNPEAAFTGAM----LERVRATWFDPDVFFETIFLWDPTAAILLFNRSGINEGGSSTIPMKVITDQGV 811
            +N  + + L G  D+P+  G       E   +G    P++ +R  V        DTL+GL+  LP S +   P+        +V LL + +++   N  +  L++G LT IA++F    +     ++  +D + VMGGAV+V GNL  SP   N  AE+N+Y DP+A +  F    +  V I MVGLDATD V ++ + +  L E    PEA F   +    LE +   W         +F WD   A ++ + S +        P++VI + G+
Sbjct:   50 QNALDMLALAGHPDIPVACG------RETPLQGNREFPDS-WRTGV--------DTLYGLT--LPTSPSEPSPM-------GAVELLIDRIQNSPTN--IMLLTLGPLTNIAELFQAQPD-----IIDGIDTIYVMGGAVDVPGNLQASPTPENVTAEWNLYVDPYATRLVF----EADVPIVMVGLDATDQVPMTPDFYRRLGEDRTTPEANFVYDIMTQNLELINNGW---------LFFWDGLVAAVVTDHSLVT---LERRPIRVIDEDGI 277
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BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Match: A0A6P5YJ88_DURZI (uncharacterized protein LOC111292450 isoform X1 n=8 Tax=Durio zibethinus TaxID=66656 RepID=A0A6P5YJ88_DURZI)

HSP 1 Score: 90.5 bits (223), Expect = 1.040e-14
Identity = 91/323 (28.17%), Postives = 135/323 (41.80%), Query Frame = 2 
Query:    5 RNFYNTMFLHGVTDVPILSGSPYAIVEEEAA------------EGTGRNPETDYRAVVPAD--NLLWSDTLWGL-SVFLPQSSNYYDPLTNSYDDNSSVPLLAE-MVESLGDNETVTFLSVGTLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAV-----------NVS-----------GNLFTSPN-NSNAEFNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTEIPGNPEAAFTGAMLERVRATWFDPDVFFETIFLWDPTA---AILLFNRSGINEGGSSTIPMK-----VITDQGVYGDEQGA 832
             + Y+ +++ G  D+ +  G    I+E+               +G        YR  +P      L  DT +G+   FLP+ S  Y PL          P   + M+E +       FL +G  T  A    +++   L+     V+ + VMGG V           N S           GNLFT  N N  AEFNI+ DP AA Q F      G+ +T+V LDAT+ + ++EE F    E  G  EA +    L+  R TWFD D F+ + F+WD      A+ +   S  N+G +    M+     V+T    YG   G+
Sbjct:   77 NHIYDLLYMMGRNDIAVGVGGEGGIMEDGTLLPNVGGHLPLIEQGMTTAGGCRYRQAIPVGLGGRLDIDTNFGIRKAFLPRGSRKYSPLQQ--------PTAQQVMIEKISAGPITVFL-IGAHTNFAIF--LMNNPHLK---KNVEHIYVMGGGVRSKNTTGCCPQNASTSCEPSQCGYPGNLFTDYNSNPYAEFNIFGDPFAAYQVF----HSGIPVTLVPLDATNTIPITEEFFKAFEESQGTYEAEYCFRALKMARDTWFD-DQFYTSYFMWDSFTSGIAVSIMRNSNKNKGENEFAEMEYINITVVTSNKPYGISDGS 380
[Close]
BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Match: A0A2U1QLM7_ARTAN (Inosine/uridine-preferring nucleoside hydrolase domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QLM7_ARTAN)

HSP 1 Score: 89.4 bits (220), Expect = 1.400e-14
Identity = 90/323 (27.86%), Postives = 139/323 (43.03%), Query Frame = 2 
Query:    5 RNFYNTMFLHGVTDVPILSGSPYAIVEEEAAE------------GTGRNPETDYRAVVP--ADNLLWSDTLWGL-SVFLPQSSNYYDPLTNSYDDNSSVPLLAE-MVESLGDNETVTFLSVGTLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAV-----------NVS-----------GNLFTS-PNNSNAEFNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTEIPGNPEAAFTGAMLERVRATWFDPDVFFETIFLWDP----TAAILLFN---RSGINEGGSST-IPMKVITDQGVYGDEQGA 832
               Y+ +++ G  DV +  G    I+E+   +            G+G      YR  +P  A   L+ DT +G    FLPQ S  Y PL          P   + ++E + D     F+ +G  T +A    +++   L+     +D + +MGG V           NV+           GN+FT   +N  AEFNI+ DP AA Q        G+ IT+V LDAT+ + +++  F+         EA +    L+ VR TWFD D F+E+ F+WD      A   + N   ++G NE      I + VIT    +G   G+
Sbjct:   74 NQIYDILYMMGRDDVAVGVGGEGGILEDGTIQPNVGGYIPIIDQGSGTAGPCRYRQAIPVGAGGRLYKDTNFGYRKSFLPQGSRRYSPLQQ--------PTAQQVLIEKISDGPVSLFV-IGAHTNVAIF--LMTNPHLK---KNIDHIYIMGGGVKSKNPTGCCPENVNSTCEPQQCGDRGNIFTGYKSNPYAEFNIFGDPFAAYQVI----HSGIPITIVPLDATNTIPITQSFFEAFERNQHTYEAQYAFKSLKMVRDTWFD-DQFYESCFMWDSFMTGVATSFMHNLHTKNGENEFAEMEYINITVITSNKPFGISDGS 377
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BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Match: A0A662A950_9BACT (IU_nuc_hydro domain-containing protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A662A950_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 2.070e-14
Identity = 59/192 (30.73%), Postives = 105/192 (54.69%), Query Frame = 2 
Query:  272 MVESLGD-NETVTFLSVGTLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAVNVSGNLFTS--PNNSNAEFNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTEIPGNPEAAFTGAMLERVRATWFDPDVFFETIFLWDPTAAILLFNRSGINEGGSSTIPMKVITDQGVYGDEQGATR 838
            ++  LG+ ++ + ++++G +T + +   +L +E +  + SK++ + +MGGAVNV GNL      +N  AE+NI+ DP AA   F    Q G+++ ++ LDAT++  ++E+ ++ LT     PEA F   M+  +   +       +T + WDP AA++    +  N       P+KVIT     GDE G T+
Sbjct:  144 IINYLGNLSKPINYVALGPMTNLGQ---VLQQEPV--LASKINAVYIMGGAVNVPGNLQYGGIEDNPYAEWNIFLDPDAADIVF----QSGINVVLIPLDATNNAPVTEDFYNRLTNDHTTPEADFVFEMMSELMEVY-------DTFYFWDPLAAVI---STAQNIADIQNYPLKVITGS---GDENGRTK 313
[Close]
BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Match: A0A2U1P205_ARTAN (Inosine/uridine-preferring nucleoside hydrolase domain-containing protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1P205_ARTAN)

HSP 1 Score: 89.4 bits (220), Expect = 2.180e-14
Identity = 90/323 (27.86%), Postives = 139/323 (43.03%), Query Frame = 2 
Query:    5 RNFYNTMFLHGVTDVPILSGSPYAIVEEEAAE------------GTGRNPETDYRAVVP--ADNLLWSDTLWGL-SVFLPQSSNYYDPLTNSYDDNSSVPLLAE-MVESLGDNETVTFLSVGTLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAV-----------NVS-----------GNLFTS-PNNSNAEFNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTEIPGNPEAAFTGAMLERVRATWFDPDVFFETIFLWDP----TAAILLFN---RSGINEGGSST-IPMKVITDQGVYGDEQGA 832
               Y+ +++ G  DV +  G    I+E+   +            G+G      YR  +P  A   L+ DT +G    FLPQ S  Y PL          P   + ++E + D     F+ +G  T +A    +++   L+     +D + +MGG V           NV+           GN+FT   +N  AEFNI+ DP AA Q        G+ IT+V LDAT+ + +++  F+         EA +    L+ VR TWFD D F+E+ F+WD      A   + N   ++G NE      I + VIT    +G   G+
Sbjct:   19 NQIYDILYMMGRDDVAVGVGGEGGILEDGTIQPNVGGYIPIIDQGSGTAGPCRYRQAIPVGAGGRLYKDTNFGYRKSFLPQGSRRYSPLQQ--------PTAQQVLIEKISDGPVSLFV-IGAHTNVAIF--LMTNPHLK---KNIDHIYIMGGGVKSKNPTGCCPENVNSTCEPQQCGDRGNIFTGYKSNPYAEFNIFGDPFAAYQVI----HSGIPITIVPLDATNTIPITQSFFEAFERNQHTYEAQYAFKSLKMVRDTWFD-DQFYESCFMWDSFMTGVATSFMHNLHTKNGENEFAEMEYINITVITSNKPFGISDGS 322
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11031.850.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X6NQQ7_PORUM2.190e-6842.38IU_nuc_hydro domain-containing protein n=1 Tax=Por... [more]
L8GQ41_ACACA1.850e-2033.21Inosineuridine preferring nucleoside hydrolase fam... [more]
A0A6F8T069_9GAMM1.390e-1730.96IU_nuc_hydro domain-containing protein n=1 Tax=Leg... [more]
A0A397T1W4_9GLOM8.080e-1730.08Inosine/uridine-preferring nucleoside hydrolase do... [more]
A0A397W480_9GLOM8.980e-1628.99Inosine/uridine-preferring nucleoside hydrolase do... [more]
UPI0019B4080F1.710e-1529.82Nucleoside hydrolase n=1 Tax=Burkholderiales bacte... [more]
A0A6P5YJ88_DURZI1.040e-1428.17uncharacterized protein LOC111292450 isoform X1 n=... [more]
A0A2U1QLM7_ARTAN1.400e-1427.86Inosine/uridine-preferring nucleoside hydrolase do... [more]
A0A662A950_9BACT2.070e-1430.73IU_nuc_hydro domain-containing protein n=1 Tax=Bac... [more]
A0A2U1P205_ARTAN2.180e-1427.86Inosine/uridine-preferring nucleoside hydrolase do... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11031contigH-elongata_contig11031:2861..8242 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.9
Seed ortholog evalue4.5e-14
Seed eggNOG ortholog88036.EFJ36933
KEGG koko:K14319
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
EggNOG free text desc.inosine-uridine preferring nucleoside hydrolase
EggNOG OGs37HYC@33090,3G9BH@35493,COG1957@1,KOG2938@2759
COG Functional cat.F
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Exons6
Model size3050
Cds size1143
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11031.850.1prot_H-elongata_contig11031.850.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11031 4746..8220 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.8861172-UTR-H-elongata_contig11031:2860..47451622929629.8861172-UTR-H-elongata_contig11031:2860..4745Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11031 2861..4745 -
1691679098.0499938-UTR-H-elongata_contig11031:2860..47451691679098.0499938-UTR-H-elongata_contig11031:2860..4745Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11031 2861..4745 -
1622929629.984736-UTR-H-elongata_contig11031:8220..82421622929629.984736-UTR-H-elongata_contig11031:8220..8242Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11031 8221..8242 -
1691679098.1300921-UTR-H-elongata_contig11031:8220..82421691679098.1300921-UTR-H-elongata_contig11031:8220..8242Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11031 8221..8242 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.898356-CDS-H-elongata_contig11031:4745..49121622929629.898356-CDS-H-elongata_contig11031:4745..4912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 4746..4912 -
1691679098.0635047-CDS-H-elongata_contig11031:4745..49121691679098.0635047-CDS-H-elongata_contig11031:4745..4912Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 4746..4912 -
1622929629.9118073-CDS-H-elongata_contig11031:5650..58741622929629.9118073-CDS-H-elongata_contig11031:5650..5874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 5651..5874 -
1691679098.070863-CDS-H-elongata_contig11031:5650..58741691679098.070863-CDS-H-elongata_contig11031:5650..5874Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 5651..5874 -
1622929629.9266553-CDS-H-elongata_contig11031:6267..65521622929629.9266553-CDS-H-elongata_contig11031:6267..6552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 6268..6552 -
1691679098.0787208-CDS-H-elongata_contig11031:6267..65521691679098.0787208-CDS-H-elongata_contig11031:6267..6552Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 6268..6552 -
1622929629.9451628-CDS-H-elongata_contig11031:6994..70711622929629.9451628-CDS-H-elongata_contig11031:6994..7071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 6995..7071 -
1691679098.0868266-CDS-H-elongata_contig11031:6994..70711691679098.0868266-CDS-H-elongata_contig11031:6994..7071Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 6995..7071 -
1622929629.960091-CDS-H-elongata_contig11031:7344..76421622929629.960091-CDS-H-elongata_contig11031:7344..7642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 7345..7642 -
1691679098.0969503-CDS-H-elongata_contig11031:7344..76421691679098.0969503-CDS-H-elongata_contig11031:7344..7642Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 7345..7642 -
1622929629.9716923-CDS-H-elongata_contig11031:8128..82201622929629.9716923-CDS-H-elongata_contig11031:8128..8220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 8129..8220 -
1691679098.1082363-CDS-H-elongata_contig11031:8128..82201691679098.1082363-CDS-H-elongata_contig11031:8128..8220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11031 8129..8220 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11031.850.1

>prot_H-elongata_contig11031.850.1 ID=prot_H-elongata_contig11031.850.1|Name=mRNA_H-elongata_contig11031.850.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=381bp
MFLHGVTDVPILSGSPYAIVEEEAAEGTGRNPETDYRAVVPADNLLWSDT
LWGLSVFLPQSSNYYDPLTNSYDDNSSVPLLAEMVESLGDNETVTFLSVG
TLTPIAKMFDILSEERLEGVLSKVDDLVVMGGAVNVSGNLFTSPNNSNAE
FNIYNDPHAAQQAFVGFSQHGVHITMVGLDATDDVSLSEELFDTLTEIPG
NPEAAFTGAMLERVRATWFDPDVFFETIFLWDPTAAILLFNRSGINEGGS
STIPMKVITDQGVYGDEQGATRECTADEAVDDSLCASVEVVTEVDGDVIN
TILLEILQSEVNSAVIHLACPGRAYVHEIHNGDSCDTVAGCGASGKMCKR
DESCAQKGHGCIAETGCRYCGFGRFSDIAC*
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mRNA from alignment at H-elongata_contig11031:2861..8242-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11031.850.1 ID=mRNA_H-elongata_contig11031.850.1|Name=mRNA_H-elongata_contig11031.850.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5382bp|location=Sequence derived from alignment at H-elongata_contig11031:2861..8242- (Himanthalia elongata Himel1 dioecious)
CTACCGTAACTTCTACAACACCATGTTCCTGCACGGCGTGACCGACGTAC
CCATCCTATCGGGATCTCCGTATGCGATCGTGGAGGAGGAAGCCGCAGAA
GGCACCGGCCGCAAGTGCGCAGCAGCGCGCGTGTCCGTTTTCTTCTGAGC
ATTTTAATATTTCGGTGGCTTTCGGTGGCTTTAGTGTGTCGTCCTTGCCG
GGATAAGGGCAATCAAAAAAAAAATCGGAAAACGCTATATGATTCATACA
AGACCAAATTGTGGCCTTATCTCTGGTAACGACACATCGCTGGATTCAGG
GATGATAATCCTGGGGTATTGATAGCACGAGGGTCGGACTTCACAACCCA
GTTAGAGCTCGACTATAGGTTTTTAACAATGCCTTTGTAGCCACTGTGCT
ACTGATCGAGCCACCCCTTCAGGGCTGAAAGTGGGGTCTTGTGGTTACAC
TTTGAGTAACTATATAAAATAAGAAAGTTTTCTTTGCTCCCACCGTTTCT
GTGTGCGAGCTGAGCGCTGACGTCGCTGGATAATCACGTGACTCCGTCTG
ATATAATCAAGCATGTTTTCATTTTTCGTTGTCCGAAACCCGATTCACAG
CCCGGAAACGGACTACCGCGCCGTGGTGCCCGCGGACAACCTCCTGTGGT
CGGACACGTTGTGGGGTCTAAGCGTCTTTCTGCCCCAAAGTTCGAACTAC
TACGACCCACTAACGAACTCTTACGACGATAATTCGTCCGTGCCCCTGCT
AGCTGAAATGGTGGAGAGCCTCGGTGACAACGAAACGGTCACGTTCCTGA
GTGTGGGGACGCTCACGCCCATCGCCAAGATGTTCGACATCCTTTCAGAG
GAACGACTGGAGGGTGTGCTGAGCAAGGTTGACGACCTCGTGGTAATGGT
GAGAAAATTCACCGAGACGAACATCGCATGCTACTCTACGCTATATAGAG
AGTGGAGCAATACAGTGCAAGCCGTACGTAGCAGTGCCTTCACGGCGTGG
ACATCAGCTTCGAATCCCCTGGCGGTAGTGAAGTCGACCGTATGCTACCC
TACACTCGCGCTGCATTTTAAACGTCATGCCCGCACCATTTTATGGTGCT
TTGCTTTCCGTGGACGTTCACTTACCTTCTACCATCGCCGCTTGTCATCA
CACATCAAAACATCTATTTAGGGAGGCGCGGTGAACGTTTCTGGCAACTT
GTTCACCAGTCCCAACAACTCTAACGCGGAGTTTAACATCTATAACGAGT
AAGCAACGCAGGGCCTTCGTAACGATCAGCGCTCGTTGATTTGAGTTATC
TTGTTGTTACTGCTGCCGATGCCACAATTCGGAGAGGTTCGTAACGATAA
TACCTCAAGGATATACATCGGCTGGCTTCCCTTATCAGGTAGATATTGGT
CTTATAAATTTGCCGCTGACATGGGCTAAGGAAGAAATACAGCAAGCGAT
AGGCTACAACCAATACGCGACGAGCTGCCTTTGACGAAGAACAGCGTTTG
CTCGTTTTTGTGTCCGCGAACGCTGAGTGCTTCGGTAGCTCTGAGGCGTG
GGGACACGTGGGTGGCAGGGATACGTTGCGTCGCGTCCCCGCTGACAGTT
AACGATGTGGGCGTAATCTAAATGTACTTGTATCCGCTCCCCTGATTAAC
GTATATCACCTCCTCTTCAACCTCAACACCCGGTACCCAGCCCGCATGCA
GCCCAACAGGCCTTCGTTGGATTCTCTCAGCACGGGGTACACATCACCAT
GGTGGGACTGGACGCCACAGATGACGTAAGCCTTAGCGAGGAGCTGTTCG
ATACGCTCACGGAGATTCCCGGTAACCCCGAGGCTGCTTTTACTGGGGCC
ATGCTCGAGAGGGTCCGTGCGACCTGGTTTGACCCTGACGTCTTCTTCGA
GACGATTTTTTTGTGGGACCCAACCGCGGCGATCCTGCTATTTAATCGCT
CTGGCATAAACGAAGGGGGCAGCTCGTGAGTATGTAAAAGATATATTAAA
TAACGAAGGGGCAGCTATTACATGCGAGGGGTACCTTACACGTGATATCT
CAAAACGTTCGCCGTGACTCTCTATCCTCTGTATGTGTGCGGTAAGATGT
CTTCGAGAGTGCTGCGCGATCTACCAGCGTACCGCAGTAGTAGCTTCGAT
TCATGACACTGTCTCTTTTTTCCCACCGAAGCTTCACAGAATTAACAGCT
CGTGGAGCTAGTTGTACGTACGACTCGTGGGGCGAAGACGTGCTGAAGTC
AAACCGCCCAATCGTTCAGCTGAGTGTAACAACACAACACACGTTAGATG
CAAACATCATGGCAGTTTATCACGGCTCATACGCCATATATTTCTATCGC
GTGCTGCTCTGGCGGCAGAACCATCCCGATGAAGGTCATCACCGACCAGG
GCGTTTACGGCGATGAGCAGGGCGCGACGAGGGAATGCACCGCTGACGAG
GCGGTGGACGACTCCCTCTGTGCCTCGGTCGAGGTAGTGACAGAGGTGGA
CGGCGACGTCATAAATACCATCTTGCTGGAAATTCTCCAGTCAGAGGTCA
ACTCTGCAGTGATCCATCTGGCCTGCCCTGGTCGAGCCTACGGTGAGAGA
ACAATGCACGGTTTCCCGGCGGTGTAGAGTACGCAGACCGAAACAAACGA
GTCAGCTGTCATTACCAATCTTTCGCGCTCTTCGGCAACGTCCAAATATC
TCGATTCACGGAGCCTGCTGAGCAGCTGTTTGCTCTAGGTACCCTCTGCA
ACACTAAATAATTATTGGATCATGGCGCTTACTATGGCGGCATATCCTAA
ACTCAAAACCTATACGTGAACCTTGGTATGGTTGCGCCCAGTGGCTGTGC
ACGTTAACCCTTGATCGGACAGAGGATGAGTCCACAATATACAACCTTTT
GCTCATCTTGAGTCCATAAAACATGCGTCCCGCGCATTTTCCCGGTATTC
TTCGCCTCACCCTAAGAGCTGAACACGCCAGCGTATTTTCTTCCTCAATA
CTGCGATAATTTGTTAGATCCTATGTGGAGAGTATAGTATATTGTGAAGG
AGAATCCGTACATGCTGGAAATATTTCCAGACTGGGCACACCAACGCCGT
CGAGAGCAAAACACAAAATTATAAACCTGGCGAGAGCTCCTTGTCTGGAT
TCTCTTCACCGCTCAACAGATTGGACACAGCCTAAGGTCGCCCCCAAAAC
TATCTTGGAGACGCCCCATTGACACTGGCGTCAACCGTTCACGTACACCT
CGTTTTCTCAGCTGAAAGTATTACGTGTGCAAAACCCGTGTGTCCCTCGT
TTGGCTCGTCGGTGTGGCCGTATTTTTCAGTCCACGAAATTCATAATGGT
GATAGTTGCGACACGGTGGCTGGCTGCGGTGCGTCGGGGAAAATGTGTAA
GCGAGACGAATCATGCGCCCAGAAAGGCCATGGCTGTATCGCGGAGACTG
GATGTCGCTACTGTGGATTCGGCAGGTTCTCGGACATCGCGTGTTAAACG
GCGGGGGAACATTGCCAACCTCAAAGTTAGTCCCTTCTTTGGCGCCATCG
TCAACTTACGTTTCGGTGGCCATTGTTCGGTGTAATGCACGCCGGTTCGC
TCTGACGAGCGCTCGTAAATACAGGAATATTTAAGAGTAAAACGTATCGT
CAACTGTGCGTCACATCGAATATAGGGTAGCTAGTAAACTCGAGAGTATA
TTTGGAAATCACGGCGGCCGTAGGTTTTCAGCTTGCGGAAAGGTTCAGCC
GATTACAAAGGTGGATTAATAAGTGAGTCTTCCCAGTCTCCTGTTTTTGA
GAGCCTTGGAAAAATTTTCGTTTCCTCGAAGACCTAGCTGTGAGTAGTTT
AATAAAATGATAATATGCGCGTGTTTCGCGCGGATGGCTTCTGTACTCCA
CGGAGTGAGGATTTGTGCGATTAGAATCCCAGGCCGAAACATAGAATCCT
TGGACTCATAATGAGAACCCGTGGCTCTTCGTTTATTCGTTCTCCGATAG
GACCGCGTCCCGAAAGCCACACACAGGTCGTCAACAACTGTGTATGTTCT
CTTTTTTGTGTGTTTCTTTCTTTTTCTTTGGAGATGTTGCTTTTCCGGAT
ATTTGCATTATGTACCATTTGCCGTTTCTTTTTTGTATTGGAGAGTACGT
TGAATTGTTTGTTTGTTTCCGGATGGTGAGTTTTCTACCTTGTGACCACG
GACTGGATTTTGACATCAGCTTATGTGAGAATTCAATCAATCAAAACTCA
ATCGATGATACTAAAGGCTACGCCGTTATTCCATCTGGTATATCTTTCAG
CAGTATGCTCTTAACGTAAGGGCGTGGTGACGGCGACAAACGCTCTGTTA
GGCTAGATTGAGATTAATTGTAAAATTATCAAAAGCGAGGTTGGGATACT
TCTAGAAATGAAAGAAGTTGGTTAACCGTAGTTATTTTCATCCAATTACG
AGCTTTGTCACACTTGCTAGTACATGAGGTTATCAGCCCTCCGAGGGTAT
CCACGTCACCGATACTATTTAGTGTCTCCCATGTTTGCAAGGGGGTTCAC
ACTGTAGGGTACTTTTTGTACCTTCGGCAGTTCTGGTTGATACCCTGGTA
GGTATGATAGATTATGAGAGCTCTTTGTGGGTGCTGGTTCTCCCCAGAGT
GTTTCAGTATCAGTGGACCAGGATTGTCCTTTGCCTACGGGTTTGTCAGA
TTGATGGTCTCGTACTTATTCACTTCATCGCGCCTGCAGCGATGCTTACT
ACCTCCCAGGCTTCGTCCAGGTCGGGGCGGGGCCACACTTAAGGAGATGG
AGCGGGAAGGCACAACGGGTTGCCGACGGTAGCGGGACGCAGCTCGTGTG
ATCTTATTAGATTACAGCATACGCGATGATGTTTAAGGCCAAACTATTCG
TTCCAACGGCAGTGGCAAACGAAACACTTCGGCATCGTCGCAGAAATCGG
GAGGAACACGATACGCCTATATGAGTAAGAACCAGATTCGACCCAGGCGT
GGAAGATGGACGGGCCAAGGAGAGGTGATAGAACCAAAGCCATCCCGCGA
GACCAGAACCTCAGGAGCGAATGGGGGTAGGAAATGTATGGTATGTATGT
ATGGTCATCACATAGAGAAGAGTAAGATCAAACGGATTTGGTTGCTTTCT
GCTCGTGGTCAGGTGAACAGAGGAAAATGAATTTCCCCTCTCCCAGTTCG
CGCCTGAGAATTTGGTTTCGCGAGACGGGTTCAGCAGTCCCATCCTGCGT
CAGCCTGCTCATTCTCTCAGACCAGACTGAATCTGGGGCTTACTCCCGGA
ATCCTCTCGATCCTCTTGTTTTCCGAGACGGCGTCAATATCTACCGTCAA
CCGCCATCGGGTCAATCCCGATTCCATCAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig11031:2861..8242-

>mRNA_H-elongata_contig11031.850.1 ID=mRNA_H-elongata_contig11031.850.1|Name=mRNA_H-elongata_contig11031.850.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2286bp|location=Sequence derived from alignment at H-elongata_contig11031:2861..8242- (Himanthalia elongata Himel1 dioecious)
ATGTTCCTGCACGGCGTGACCGACGTACCCATCCTATCGGGATCTCCGTA
TGCGATCGTGGAGGAGGAAGCCGCAGAAGGCACCGGCCGCAAATGTTCCT
GCACGGCGTGACCGACGTACCCATCCTATCGGGATCTCCGTATGCGATCG
TGGAGGAGGAAGCCGCAGAAGGCACCGGCCGCAACCCGGAAACGGACTAC
CGCGCCGTGGTGCCCGCGGACAACCTCCTGTGGTCGGACACGTTGTGGGG
TCTAAGCGTCTTTCTGCCCCAAAGTTCGAACTACTACGACCCACTAACGA
ACTCTTACGACGATAATTCGTCCGTGCCCCTGCTAGCTGAAATGGTGGAG
AGCCTCGGTGACAACGAAACGGTCACGTTCCTGAGTGTGGGGACGCTCAC
GCCCATCGCCAAGATGTTCGACATCCTTTCAGAGGAACGACTGGAGGGTG
TGCTGAGCAAGGTTGACGACCTCGTGGTAATGCCCGGAAACGGACTACCG
CGCCGTGGTGCCCGCGGACAACCTCCTGTGGTCGGACACGTTGTGGGGTC
TAAGCGTCTTTCTGCCCCAAAGTTCGAACTACTACGACCCACTAACGAAC
TCTTACGACGATAATTCGTCCGTGCCCCTGCTAGCTGAAATGGTGGAGAG
CCTCGGTGACAACGAAACGGTCACGTTCCTGAGTGTGGGGACGCTCACGC
CCATCGCCAAGATGTTCGACATCCTTTCAGAGGAACGACTGGAGGGTGTG
CTGAGCAAGGTTGACGACCTCGTGGTAATGGGAGGCGCGGTGAACGTTTC
TGGCAACTTGTTCACCAGTCCCAACAACTCTAACGCGGAGTTTAACATCT
ATAACGAGGAGGCGCGGTGAACGTTTCTGGCAACTTGTTCACCAGTCCCA
ACAACTCTAACGCGGAGTTTAACATCTATAACGACCCGCATGCAGCCCAA
CAGGCCTTCGTTGGATTCTCTCAGCACGGGGTACACATCACCATGGTGGG
ACTGGACGCCACAGATGACGTAAGCCTTAGCGAGGAGCTGTTCGATACGC
TCACGGAGATTCCCGGTAACCCCGAGGCTGCTTTTACTGGGGCCATGCTC
GAGAGGGTCCGTGCGACCTGGTTTGACCCTGACGTCTTCTTCGAGACGAT
TTTTTTGTGGGACCCAACCGCGGCGATCCTGCTATTTAATCGCTCTGGCA
TAAACGAAGGGGGCAGCTCCCCGCATGCAGCCCAACAGGCCTTCGTTGGA
TTCTCTCAGCACGGGGTACACATCACCATGGTGGGACTGGACGCCACAGA
TGACGTAAGCCTTAGCGAGGAGCTGTTCGATACGCTCACGGAGATTCCCG
GTAACCCCGAGGCTGCTTTTACTGGGGCCATGCTCGAGAGGGTCCGTGCG
ACCTGGTTTGACCCTGACGTCTTCTTCGAGACGATTTTTTTGTGGGACCC
AACCGCGGCGATCCTGCTATTTAATCGCTCTGGCATAAACGAAGGGGGCA
GCTCAACCATCCCGATGAAGGTCATCACCGACCAGGGCGTTTACGGCGAT
GAGCAGGGCGCGACGAGGGAATGCACCGCTGACGAGGCGGTGGACGACTC
CCTCTGTGCCTCGGTCGAGGTAGTGACAGAGGTGGACGGCGACGTCATAA
ATACCATCTTGCTGGAAATTCTCCAGTCAGAGGTCAACTCTGCAGTGATC
CATCTGGCCTGCCCTGGTCGAGCCTACGAACCATCCCGATGAAGGTCATC
ACCGACCAGGGCGTTTACGGCGATGAGCAGGGCGCGACGAGGGAATGCAC
CGCTGACGAGGCGGTGGACGACTCCCTCTGTGCCTCGGTCGAGGTAGTGA
CAGAGGTGGACGGCGACGTCATAAATACCATCTTGCTGGAAATTCTCCAG
TCAGAGGTCAACTCTGCAGTGATCCATCTGGCCTGCCCTGGTCGAGCCTA
CGTCCACGAAATTCATAATGGTGATAGTTGCGACACGGTGGCTGGCTGCG
GTGCGTCGGGGAAAATGTGTAAGCGAGACGAATCATGCGCCCAGAAAGGC
CATGGCTGTATCGCGGAGACTGGATGTCGCTACTGTGGATTCGGCAGGTT
CTCGGACATCGCGTGTTAATCCACGAAATTCATAATGGTGATAGTTGCGA
CACGGTGGCTGGCTGCGGTGCGTCGGGGAAAATGTGTAAGCGAGACGAAT
CATGCGCCCAGAAAGGCCATGGCTGTATCGCGGAGACTGGATGTCGCTAC
TGTGGATTCGGCAGGTTCTCGGACATCGCGTGTTAA
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