mRNA_H-elongata_contig1103.847.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Match: A0A6H5KJJ4_9PHAE (Fatty acyl-CoA reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJJ4_9PHAE) HSP 1 Score: 441 bits (1135), Expect = 1.070e-142 Identity = 293/524 (55.92%), Postives = 330/524 (62.98%), Query Frame = 1
Query: 775 MLAAGGA--LWCAARLAR*REEIFAWSPIAPEALARASASASARRGASGAFSKGETPGSISGI-CRNVRGSAQPIEC--GDDPVGAIFRPGTEVHRAFCAP------------------------TASSSDGAVVFLTGVTGLVGRMVLFDLLKQGAAVSTDRPGEGSATDREADASRGSD-----GSAQKRLKRVVVLVRSKKGVSASHRLASIRDSPMFRPLRESGAWIDEAEEANTQSTSGAYDPGASRLCPSSAAFGSRRAAAAA---RARGAFVTVVEGELGKEGVGLTPEAHAMLAEASVTHSLHCAASVSFSDPLAKAAATNVTGALRVAALVASWPSCRTLVHVSTAFVHGGNTGTEARPLSQELPDLGGRNAERLYRSAQNAPGGYSSSGVGGRGGPGPGKHALEAMEDLGYPNTYTFTKALGEHLLTRALRAHNRRLGR----AERSEKE-----------------MQTQKQCDAPAP-GLRLRIVRPSIVGPAWVFPWPGWTGEQPSTVTGE 2169
+LAA GA LWCA R+AR REEIFA SP+ PEAL+RA+A A+A G G G SG C + P E DDPVG +FRPGT R FCAP A+ GAVVFLTGVTGLVG+MVLFDLL+QGAAVS+ P S D EA + G G A + L+ VVVLVR KKGV+ S RLASIRDS MFRPLRESGAW+DE E +T P A R P F R A + RGA V VEGELG EG+GL+ E+ A+L A VTH+LHCAASVSFSDPLA+AAATNVTGALRVAALVASWPSC TL+HVSTAFVHGG +GT + PL QELPDLGGR+ ERLYRSAQ P + G GK A++AM DLGYPNTYTFTKALGEHLL RAL AHNRRL R A S+ E + + +P P LRLR+VRPSIVGPAWVFPWPGWTGEQPSTVTGE
Sbjct: 89 LLAAVGAACLWCAVRVARWREEIFAQSPVVPEALSRAAAVAAAAAGVP--LGPGGRAGRDSGDDCGRMAEELPPAEACVDDDPVGCLFRPGTRASRDFCAPRLMPDASSSVRGGCHSVNGGSTATAAAEGSGAVVFLTGVTGLVGQMVLFDLLRQGAAVSSGGP---SCDDDEAGEALGGGKAGLGGVASEGLRSVVVLVRGKKGVAPSDRLASIRDSAMFRPLRESGAWVDE--ETDT--------PSAERASP--LPFPPSREALGLPPKKRRGAVVIAVEGELGGEGLGLSAESRALLTGAGVTHALHCAASVSFSDPLAEAAATNVTGALRVAALVASWPSCGTLIHVSTAFVHGGKSGTASCPLPQELPDLGGRSPERLYRSAQRTPSAPDAGGXXXXXXX-XGKEAVDAMADLGYPNTYTFTKALGEHLLVRALSAHNRRLDRLAAAAAASDVEEGXXXXXXXRLAAGGRGLTSGDSRGSPKPCRLRLRVVRPSIVGPAWVFPWPGWTGEQPSTVTGE 594
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Match: D7FUE9_ECTSI (Alkylglycerone-phosphate synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE9_ECTSI) HSP 1 Score: 388 bits (997), Expect = 1.350e-113 Identity = 238/392 (60.71%), Postives = 268/392 (68.37%), Query Frame = 1
Query: 1066 ASSSDGAVVFLTGVTGLVGRMVLFDLLKQGAAVSTDRPGE-GSATDREADASRGSDGSAQKRLKRVVVLVRSKKGVSASHRLASIRDSPMFRPLRESGAWIDEAEEANTQSTSGAYDPGASRLCPSSAAFGSRRAAAAA--RARGAFVTVVEGELGKEGVGLTPEAHAMLAEASVTHSLHCAASVSFSDPLAKAAATNVTGALRVAALVASWPSCRTLVHVSTAFVHGGNTGTEARPLSQELPDLGGRNAERLYRSAQNAPGGYSSSGVGGRGGPGPGKHALEAMEDLGYPNTYTFTKALGEHLLTRALRAHNRRLGRAERSEKEMQTQKQCDAPAPG----------------------LRLRIVRPSIVGPAWVFPWPGWTGEQPSTVTG 2166
A+ GAVVFLTGVTGLVG+MVLFDLL+QGAA S+ G+ G A + G G A L+ VVVLVR KKGV+ S RLASIRDS MFRPLRESGAW+DE E +T S + A CP S R A + +GA V VEGELG EG+GL+ E+ A+LA A VTH+LHCAASVSFSDPLA+AAATNVTGALRVAALVASWPSC TL+HVSTAFVHGG +GT + PL QELPDLGGR+ ERLYRSAQ AP S +G GK AL+AM DLGYPNTYTFTKALGEHLL RAL AHNRRL R+ + ++ D A G LRLR+VRPSIVGPAWVFPWPGWTGEQPSTVTG
Sbjct: 25 AAEGSGAVVFLTGVTGLVGQMVLFDLLRQGAAASSGASGDDGEAREGLGGGEDGLGGVASGGLRAVVVLVRGKKGVAPSDRLASIRDSAMFRPLRESGAWVDE--ETDTPSAARASP----LPCPPS-----REALGLPPKKRQGAVVIAVEGELGGEGLGLSAESRALLAGAGVTHALHCAASVSFSDPLAEAAATNVTGALRVAALVASWPSCGTLIHVSTAFVHGGKSGTASCPLPQELPDLGGRSPERLYRSAQRAPS-ASDAGXXXXXXXXAGKEALDAMADLGYPNTYTFTKALGEHLLVRALSAHNRRLDRSAAAAAAADVEESGDDEAGGRLAXXXXXXXXXXXXXXXEPCRLRLRVVRPSIVGPAWVFPWPGWTGEQPSTVTG 404
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Match: A0A7S2LKQ6_9STRA (Fatty acyl-CoA reductase (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LKQ6_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.100e-25 Identity = 94/301 (31.23%), Postives = 133/301 (44.19%), Query Frame = 1
Query: 1258 VVVLVRSKKGVSASHRLASIRDSPMFRPLRESGAWIDEAEEANTQSTSGAYDPGASRLCPSSAAFGSRRAAAAARARGAFVTVVEGELGKEGVGLTPEAHAMLAEASVTHSLHCAASVSFSDPLAKAAATNVTGALRVAALVASWPSCRTLVHVSTAFVHGGNTGTEARPLSQELPDLGGRNAERLYRSAQNAPGGYSSSGVGGRGGPGPGKHALEAMEDLGYPNTYTFTKALGEHLLTRALRAHNRRLGRAERSEKEMQTQKQCDAPAPGLRLRIVRPSIVGPAWVFPWPGWTGEQPSTV 2160
V VL R+KK +SA R+A++ D MF L ++ + TS V VVEG++ K +G++ + + ++H +HCAASV F+ L AA TN+T +L++ L + V++STAFVHGGN G+ PL + L LG +AE +Y+S + A A+ DL +PNTYT +K + EHLL R +KE T IVRP IVGPA PW GW G+ PST+
Sbjct: 39 VAVLCRAKKKMSAKERIAALLDHDMFEFL------------SSQEKTS-------------------------------LVHVVEGDVAKPNMGMSTTERNRVYQLPLSHVIHCAASVKFNQSLEGAAVTNITSSLQLQQLAKKLKA--KFVYMSTAFVHGGNIGSRNEPLPENLFSLGKYDAEDIYQSMLGSQ-----------------SLASSALNDLRFPNTYTISKCVCEHLLLR---------------DKESDT-------------IIVRPCIVGPACSSPWEGWAGDSPSTL 249
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Match: A0A7S2KA40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KA40_9STRA) HSP 1 Score: 122 bits (305), Expect = 7.750e-25 Identity = 112/378 (29.63%), Postives = 162/378 (42.86%), Query Frame = 1
Query: 1033 TEVHRAFCAPTASSS-DGAVVFLTGVTGLVGRMVLFDLLKQGAAVSTDRPGEGSATDREADASRGSDGSAQKRLKRVVVLVRSKKGVSASHRLASIRDSPMFRPLRESGAWIDEAEEANTQSTSGAYDPGASRLCPSSAAFGSRRAAAAARARGAFVTVVEGELGKEGVGLTPEAHAMLAEASVTHSLHCAASVSFSDPLAKAAATNVTGALRVAALVASWPSCRT-LVHVSTAFVHGGNTGTEARPLSQELPDLGGRNAERLYRSAQNAPGGYSSSGVGGRGGPGPGKHALEAMEDLGYPNTYTFTKALGEHLLTRALRAHNRRLGRAERSEKEMQTQKQCDAPAPGLRLRIVRPSIVGPAWVFPWPGWTGEQPSTV 2160
T V + A ++++ D + L+G TG +G ++L +LL +S D VV+LVRSKKGVS+ R+ I + MF L +A + + V VVE ++ G+ + E +++H HCAA+VSFS PL +AA +N+T +L++ L S + VHVSTAFVHGG TGT+ PL + L L + +Y+S +A AM+DL +PNTYTF+K + EHLL R E+ + T I+RPSIVGPA P+ GW+GE+PSTV
Sbjct: 70 TRVPKIIRATSSTAEEDKRMAILSGSTGFIGSLLLRNLLLNRKTLSLDGG--------------------------VVLLVRSKKGVSSHERVKRILSNSMFDFL-------------------------------------------SATDKESLVHVVEADVTLPNCGMESSLILSIRERNISHVFHCAAAVSFSQPLEEAALSNITSSLQMQLLTKSLRNGDAKFVHVSTAFVHGGETGTKDAPLPESLYSLDPYDPVEIYKSMLATQ-----------------SYASAAMKDLRFPNTYTFSKCVCEHLLQR---------------EQHVDT-------------IIIRPSIVGPAACEPFEGWSGERPSTV 333
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Match: A0A1Z5JCQ4_FISSO (Fatty acyl-CoA reductase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCQ4_FISSO) HSP 1 Score: 119 bits (299), Expect = 3.470e-24 Identity = 73/218 (33.49%), Postives = 113/218 (51.83%), Query Frame = 1
Query: 1513 GELGKEGVGLTPEAHAMLAEASVTHSLHCAASVSFSDPLAKAAATNVTGALRVAALVASWPSCRTLVHVSTAFVHGGNTGTEARPLSQELPDLGGRNAERLYRSAQNAPGGYSSSGVGGRGGPGPGKHALEAMEDLGYPNTYTFTKALGEHLLTRALRAHNRRLGRAERSEKEMQTQKQCDAPAPGLRLRIVRPSIVGPAWVFPWPGWTGEQPSTVTG 2166
G+L E G++ E ML A +TH +HCAA V+F+ P+ +AA N++ AL++ + WP+C VH ST F++ G+E PL ++L LG + + +Y S + G + AL+ ++ +PN Y FTK + EHL+ R ++ E + LRIVRP+IVGPAW+ P GW G++PST++G
Sbjct: 196 GDLQDENCGMSSETLDMLKAAKLTHIVHCAADVNFNRPIPEAAGMNISPALKLQKMSKEWPTCTRFVHCSTCFINP-ECGSEDNPLPEQLYSLGKYDPQDIYDSMR-----------------GDQELALKVKKEFDFPNNYCFTKCVAEHLVAR-------------NNDDEK------------VELRIVRPAIVGPAWLLPKRGWNGDKPSTISG 370
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Match: K0SMF7_THAOC (Alkylglycerone-phosphate synthase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SMF7_THAOC) HSP 1 Score: 120 bits (300), Expect = 5.020e-24 Identity = 80/223 (35.87%), Postives = 118/223 (52.91%), Query Frame = 1
Query: 1495 FVTVVEGELGKEGVGLTPEA-HAMLAEASVTHSLHCAASVSFSDPLAKAAATNVTGALRVAALVASWPSCRTLVHVSTAFVHGGNTGTEARPLSQELPDLGGRNAERLYRSAQNAPGGYSSSGVGGRGGPGPGKHALEAMEDLGYPNTYTFTKALGEHLLTRALRAHNRRLGRAERSEKEMQTQKQCDAPAPGLRLRIVRPSIVGPAWVFPWPGWTGEQPSTV 2160
V VVEG++ + G+TP + + + ++H LHCAA+VSFS PL AA +N+T +L V +L + T ++STAFVHG TGT++RPL + + L + ++LY S + +A AM DLG+PNTYTF+K + EHLL E++++T I+RPSIVGP+ P+ GW GE+PST+
Sbjct: 882 LVIVVEGDVTQPYCGITPAVIESSIQVSKISHVLHCAAAVSFSQPLEDAATSNITSSLNVQSLAKQLDAKFT--YLSTAFVHGDRTGTKSRPLPEAVFSLKPYDPDKLYESMLGSQ-----------------SYASAAMNDLGFPNTYTFSKCVCEHLLE---------------MERDVET-------------TIIRPSIVGPSVEEPYEGWAGERPSTI 1057
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Match: A0A813A1C6_9DINO (Agps protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A1C6_9DINO) HSP 1 Score: 116 bits (290), Expect = 8.450e-23 Identity = 95/307 (30.94%), Postives = 138/307 (44.95%), Query Frame = 1
Query: 1249 LKRVVVLVRSKKGVSASHRLASIRDSPMFRPLRESGAWIDEAEEANTQSTSGAYDPGASRLCPSSAAFGSRRAAAAARARGAFVTVVEGELGKEGVGLTPEAHAMLAEASVTHSLHCAASVSFSDPLAKAAATNVTGALRVAALVASWPSCRTLVHVSTAFVHG-GNTGTEARPLSQELPDLGGRNAERLYRSAQNAPGGYSSSGVGGRGGPGPGKHALEAMEDLGYPNTYTFTKALGEHLLTRALRAHNRRLGRAERSEKEMQTQKQCDAPAPGLRLRIVRPSIVGPAWVFPWPGWTGEQPSTVTG 2166
+ ++V++VR + G S + RL +RD MF +RE+ +D V +EG+ + G T + S+ LHCA V F P+ +AA + ++ L++ L + W + R L VSTAFVH TEA L + L +L +A LYR A + GG++ + AM +LG+PNTYTF KA+ EHL+ RA CD+ GL +RIVRPSIVGPAW +P+ GW G++PST+ G
Sbjct: 578 ITKIVLMVRQRSGKSLAERLQKLRDHTMFDEVRET------------------FDK--------------------------LVVGLEGDTSQRNFGWTEAQPSWPHRESLKAVLHCAGDVRFQQPMQQAAVSLISATLQMQQLASQWKAKRFLF-VSTAFVHAVPPPSTEA--LQERLVELRDFDAMELYRDAMSH-GGWAQT----------------AMRELGFPNTYTFCKAVAEHLVIRA-----------------------CDSE--GLDVRIVRPSIVGPAWAYPFIGWAGDKPSTIVG 795
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Match: A0A2K8DNW9_PROMN (Fatty acyl-CoA reductase (Fragment) n=1 Tax=Prorocentrum minimum TaxID=39449 RepID=A0A2K8DNW9_PROMN) HSP 1 Score: 114 bits (286), Expect = 1.350e-22 Identity = 80/222 (36.04%), Postives = 110/222 (49.55%), Query Frame = 1
Query: 1495 FVTVVEGELGKEGVGLTPEAHAMLAEASVTHSLHCAASVSFSDPLAKAAATNVTGALRVAALVASWPSCRTLVHVSTAFVHGGNTGTEARPLSQELPDLGGRNAERLYRSAQNAPGGYSSSGVGGRGGPGPGKHALEAMEDLGYPNTYTFTKALGEHLLTRALRAHNRRLGRAERSEKEMQTQKQCDAPAPGLRLRIVRPSIVGPAWVFPWPGWTGEQPSTV 2160
VTV+EG+ ++ G + A + + LHCAA V F PL +AA + ++ +L+VA L W + R L VSTAFVH T A L + L +L + LYR A + GK A +AM DLG+PNTYTF KA+ EHL+ +A C G++ IVRPSIV PAW P+ GW+G++PST+
Sbjct: 110 LVTVIEGDTSQKNFGQSDAAGPWVQREPLRVVLHCAADVRFDQPLQQAALSLISASLQVALLAKRWGASRFLF-VSTAFVHAVPAATSA--LQERLVELRDFDPMELYRDAVSH-----------------GKWAGKAMRDLGFPNTYTFAKAVAEHLILQA-----------------------CGTE--GMQAHIVRPSIVTPAWASPYAGWSGDKPSTI 286
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Match: A0A7S2U961_9STRA (Alkylglycerone-phosphate synthase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U961_9STRA) HSP 1 Score: 114 bits (286), Expect = 2.130e-22 Identity = 76/225 (33.78%), Postives = 113/225 (50.22%), Query Frame = 1
Query: 1495 FVTVVEGELGKEGVGLTP-EAHAMLAEASVTHSLHCAASVSFSDPLAKAAATNVTGALRVAALVAS--WPSCRTLVHVSTAFVHGGNTGTEARPLSQELPDLGGRNAERLYRSAQNAPGGYSSSGVGGRGGPGPGKHALEAMEDLGYPNTYTFTKALGEHLLTRALRAHNRRLGRAERSEKEMQTQKQCDAPAPGLRLRIVRPSIVGPAWVFPWPGWTGEQPSTV 2160
VTVVEG++ + VG++ + + + ++H HCAA+V F+ L AA +N+T +L++ AL + W + +H+STAFVHG GT + P+ + L L NAE +YRS + +A AM +LG+PNTYTF+K + EHLL R + I+RPSIVGPA P+ GW G++PST+
Sbjct: 48 LVTVVEGDVTQPDVGMSNNDKERVCNKFIISHVFHCAAAVKFTQTLDDAAVSNITSSLQMQALTKTLKWKKAK-YIHISTAFVHGDRLGTASDPIEESLYSLHPYNAEEIYRSMRETQ-----------------SYASSAMLELGFPNTYTFSKCVCEHLLHRDT----------------------------SVDTIIIRPSIVGPAVQEPYEGWAGDKPSTI 226
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Match: A0A812HR99_9DINO (Ads-1 protein (Fragment) n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812HR99_9DINO) HSP 1 Score: 114 bits (285), Expect = 3.260e-22 Identity = 96/305 (31.48%), Postives = 134/305 (43.93%), Query Frame = 1
Query: 1255 RVVVLVRSKKGVSASHRLASIRDSPMFRPLRESGAWIDEAEEANTQSTSGAYDPGASRLCPSSAAFGSRRAAAAARARGAFVTVVEGELGKEGVGLTPEAHAMLAEASVTHSLHCAASVSFSDPLAKAAATNVTGALRVAALVASWPSCRTLVHVSTAFVHG-GNTGTEARPLSQELPDLGGRNAERLYRSAQNAPGGYSSSGVGGRGGPGPGKHALEAMEDLGYPNTYTFTKALGEHLLTRALRAHNRRLGRAERSEKEMQTQKQCDAPAPGLRLRIVRPSIVGPAWVFPWPGWTGEQPSTVTG 2166
++V+LVR + G + + RL +RD MF +R GA+D FV +EG+ + G T + + + LHCA V F P+ +AA + ++ L++ L + W + R L VSTAFVH TEA L + L +L +A LYR A + G A AM +LG+PNTYTF KA+ EHL+ RA CD+ GL +RIVRPSIVGPAW P+ GW G++PST+ G
Sbjct: 588 KIVLLVRQRSGKTLAERLQKLRDHTMFDEVR------------------GAFDK--------------------------FVVGLEGDTSRRNFGWTEPNLSWPHKEPLKAVLHCAGDVRFQQPMQQAAVSLISATLQMQQLASQWKAKRFLF-VSTAFVHAVPPPSTEA--LQERLVELRDFDAMELYRDAMSH-----------------GAWAQTAMLELGFPNTYTFCKAVAEHLVIRA-----------------------CDSE--GLDVRIVRPSIVGPAWACPFIGWAGDKPSTIVG 803 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1103.847.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1103.847.1 >prot_H-elongata_contig1103.847.1 ID=prot_H-elongata_contig1103.847.1|Name=mRNA_H-elongata_contig1103.847.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=349bp MVLFDLLKQGAAVSTDRPGEGSATDREADASRGSDGSAQKRLKRVVVLVRback to top mRNA from alignment at H-elongata_contig1103:1292..4765+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1103.847.1 ID=mRNA_H-elongata_contig1103.847.1|Name=mRNA_H-elongata_contig1103.847.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3474bp|location=Sequence derived from alignment at H-elongata_contig1103:1292..4765+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1103:1292..4765+ >mRNA_H-elongata_contig1103.847.1 ID=mRNA_H-elongata_contig1103.847.1|Name=mRNA_H-elongata_contig1103.847.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2094bp|location=Sequence derived from alignment at H-elongata_contig1103:1292..4765+ (Himanthalia elongata Himel1 dioecious)back to top |