mRNA_H-elongata_contig110297.846.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110297.846.1
Unique NamemRNA_H-elongata_contig110297.846.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110297.846.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110297contigH-elongata_contig110297:1748..2109 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929629.516139-CDS-H-elongata_contig110297:1749..18271622929629.516139-CDS-H-elongata_contig110297:1749..1827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110297 1750..1827 -
1691679097.875458-CDS-H-elongata_contig110297:1749..18271691679097.875458-CDS-H-elongata_contig110297:1749..1827Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110297 1750..1827 -
1622929629.5487957-CDS-H-elongata_contig110297:1938..21091622929629.5487957-CDS-H-elongata_contig110297:1938..2109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110297 1939..2109 -
1691679097.883677-CDS-H-elongata_contig110297:1938..21091691679097.883677-CDS-H-elongata_contig110297:1938..2109Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110297 1939..2109 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110297.846.1prot_H-elongata_contig110297.846.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110297 1750..2109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110297.846.1

>prot_H-elongata_contig110297.846.1 ID=prot_H-elongata_contig110297.846.1|Name=mRNA_H-elongata_contig110297.846.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
AVSSAGSAGPAGTGTAVQAAVPQKKRKNLTTDQRRSAIDDLLLRSDNGKL
RRGAPAEGVPRDMAPYKEALRNVPLKLRAAQRS
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mRNA from alignment at H-elongata_contig110297:1748..2109-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110297.846.1 ID=mRNA_H-elongata_contig110297.846.1|Name=mRNA_H-elongata_contig110297.846.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=362bp|location=Sequence derived from alignment at H-elongata_contig110297:1748..2109- (Himanthalia elongata Himel1 dioecious)
GCTGTTAGTTCTGCTGGTTCTGCTGGCCCCGCTGGTACGGGTACCGCTGT
ACAGGCTGCTGTGCCGCAGAAGAAGAGGAAGAACCTCACCACCGACCAGC
GACGATCCGCCATCGATGATCTCCTTCTCCGCAGCGACAACGGGAAGCTT
CGCAGGGGTGCCCCAGCAGAAGTGCATAAGAAGTATGGGTGCTTACGTTT
CGCCATCGCCGCGCTGTGGCAACGCTACCAAGCATGAAAAACTGCGGTTG
TACTTTCTCCCGACCTGTCTTGTCGGCGCAAGGGTGTCCCACGAGACATG
GCCCCGTACAAGGAAGCGCTACGCAACGTCCCACTCAAGCTGCGCGCAGC
ACAAAGGAGCGT
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Coding sequence (CDS) from alignment at H-elongata_contig110297:1748..2109-

>mRNA_H-elongata_contig110297.846.1 ID=mRNA_H-elongata_contig110297.846.1|Name=mRNA_H-elongata_contig110297.846.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig110297:1748..2109- (Himanthalia elongata Himel1 dioecious)
GCTGTTAGTTCTGCTGGTTCTGCTGGCCCCGCTGGTACGGGTACCGCTGT
ACAGGCTGCTGTGCCGCAGAAGAAGAGGAAGAACCTCACCACCGACCAGC
GACGATCCGCCATCGATGATCTCCTTCTCCGCAGCGACAACGGGAAGCTT
CGCAGGGGTGCCCCAGCAGAAGCTGTTAGTTCTGCTGGTTCTGCTGGCCC
CGCTGGTACGGGTACCGCTGTACAGGCTGCTGTGCCGCAGAAGAAGAGGA
AGAACCTCACCACCGACCAGCGACGATCCGCCATCGATGATCTCCTTCTC
CGCAGCGACAACGGGAAGCTTCGCAGGGGTGCCCCAGCAGAAGGTGTCCC
ACGAGACATGGCCCCGTACAAGGAAGCGCTACGCAACGTCCCACTCAAGC
TGCGCGCAGCACAAAGGAGCGGTGTCCCACGAGACATGGCCCCGTACAAG
GAAGCGCTACGCAACGTCCCACTCAAGCTGCGCGCAGCACAAAGGAGC
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