mRNA_H-elongata_contig11021.835.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11021.835.1
Unique NamemRNA_H-elongata_contig11021.835.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11021.835.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11021contigH-elongata_contig11021:5309..6913 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size970
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11021.835.1prot_H-elongata_contig11021.835.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11021 5393..6519 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.4788084-UTR-H-elongata_contig11021:5308..53921622929628.4788084-UTR-H-elongata_contig11021:5308..5392Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11021 5309..5392 +
1691679097.4440548-UTR-H-elongata_contig11021:5308..53921691679097.4440548-UTR-H-elongata_contig11021:5308..5392Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11021 5309..5392 +
1622929628.521246-UTR-H-elongata_contig11021:6519..69131622929628.521246-UTR-H-elongata_contig11021:6519..6913Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11021 6520..6913 +
1691679097.4732945-UTR-H-elongata_contig11021:6519..69131691679097.4732945-UTR-H-elongata_contig11021:6519..6913Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11021 6520..6913 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.4897237-CDS-H-elongata_contig11021:5392..55031622929628.4897237-CDS-H-elongata_contig11021:5392..5503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11021 5393..5503 +
1691679097.4550266-CDS-H-elongata_contig11021:5392..55031691679097.4550266-CDS-H-elongata_contig11021:5392..5503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11021 5393..5503 +
1622929628.5024846-CDS-H-elongata_contig11021:6138..65191622929628.5024846-CDS-H-elongata_contig11021:6138..6519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11021 6139..6519 +
1691679097.4660482-CDS-H-elongata_contig11021:6138..65191691679097.4660482-CDS-H-elongata_contig11021:6138..6519Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11021 6139..6519 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11021.835.1

>prot_H-elongata_contig11021.835.1 ID=prot_H-elongata_contig11021.835.1|Name=mRNA_H-elongata_contig11021.835.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=164bp
MASGSKQGLASYTLDGRSEHLGGLVVFVWENDDSSHLVYWTIREGGGTLV
CGGSRICASTHEPHPTCVGHWKCYGGTELNRESPVKTTLFLSCGCSYSKG
MVRGSEKKVVARDLKEVTVTNPSTCVDELIVSVSFVLALLAFSVNCCLER
PFRRSFKPATSLK*
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mRNA from alignment at H-elongata_contig11021:5309..6913+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11021.835.1 ID=mRNA_H-elongata_contig11021.835.1|Name=mRNA_H-elongata_contig11021.835.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1605bp|location=Sequence derived from alignment at H-elongata_contig11021:5309..6913+ (Himanthalia elongata Himel1 dioecious)
GGAGTTTCTGGGGCGGTCTGCAAGGACGGGGACCAGTTCACACTCTCAGA
ATTTTCCGGTAACATCTCCCACAATGGCTGTTACATGGCTTCGGGGTCGA
AACAAGGCCTTGCGTCATACACACTTGACGGACGAAGCGAGCATCTCGGT
GGGTTGGTCGTCTTCGTCTGGGAGAATGATGACTCATCGCACCTGGTGAG
AGCGTTTTGGTGCCTGCGCGTGCGTGTATTATGTATATATATATTTATAT
GTGTTACCTAATGAGAACGTGTGTGTGTGTGTGTGTGTGTGTGTGAATTA
TTTCAATTGGACATAACCGCGCAATCCGGCCTTGTCATGCTAGTCCTTCT
AGGTTACACACATTGATCCTCCCAATGGGGTATCAATAATATTTGCTGCA
AGTGTTTGTGTGGTCATCAGATATAGTCTTTAGTATAGATCAACCGGATA
TGGTTGTCTCCTGCTTGTGGTAAGTTGAACAGGGAAAATTGATTTTACCT
GTCCCCTTTCGTGCCTGAGAATTTGATCTCAGAGACGAGTTCGGCCTTCC
TGTCTCGCATCAGCCCACTCGTTCTTCCATCCCAGGATGAATCTTGAATC
TTGTGTCGTTCACCGACGACCCCGAACGCTATTTGTGTACTTCAATCATA
CAATTTCTTTACGAAAGTCGTCAATATCAATCCCGCTTCCTTAAATGCCA
CAGTAATCTGTACTTAGTGATAAGCCCTCCGGAGAGAATCGGGGCTCTTT
GTCTTGCTTCTCTCTAAATACAGCATTCCATCATCATCGTGTTCGTCATT
TCTTGATGCATGCATTTCGGGTGGCGGAAGGTTTACTGGACCATTCGGGA
GGGAGGAGGAACACTCGTCTGTGGCGGTTCCAGGATCTGCGCGTCGACTC
ACGAGCCACATCCCACATGCGTCGGCCACTGGAAGTGCTACGGGGGAACC
GAATTAAACAGGGAGTCACCAGTAAAGACTACTTTATTCCTGTCTTGCGG
GTGTTCTTATTCGAAGGGAATGGTGCGAGGTTCGGAGAAGAAAGTGGTAG
CCCGCGATTTGAAGGAAGTGACAGTCACCAACCCCTCAACATGTGTAGAT
GAGTTGATCGTATCGGTCTCCTTTGTCTTGGCCCTTCTGGCTTTTAGCGT
AAATTGCTGCTTAGAACGGCCCTTTAGACGATCTTTCAAGCCTGCGACCA
GTTTAAAATGAAGGAAGTGGCAAGAACCGAAGGATCGCCTACTACGCCCC
GTGCTAGTGCTTCCAGTATACATTGGTTGTTTGTAAATAACATATTATCT
GACTAAAGGGAAGCGTATGGATTTTCCCTTAAGTTTGCGCAGTACTTCAA
GATCCCACTGGAGGTATTAATAATGCTGCATCAAGCGACATGCATTTTAC
ATGCATTCTTGGCATTCAGTGCTGGCCACTTAATTTGGGCATTATGAGAG
TCAAGAAGTAAATGGGAATACCATGCCTATAAACGTGTGGCCCAAGGCCT
CCCCGTTCCCCAGCTGCGCTGCTGGGTGAATCGCTGAGAAGATTGGTAAT
CAATGTGTAAGAGTCGTCTCGTTCTGAACGAGGAGGAAGTAGCATAAATA
TTACA
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Coding sequence (CDS) from alignment at H-elongata_contig11021:5309..6913+

>mRNA_H-elongata_contig11021.835.1 ID=mRNA_H-elongata_contig11021.835.1|Name=mRNA_H-elongata_contig11021.835.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=984bp|location=Sequence derived from alignment at H-elongata_contig11021:5309..6913+ (Himanthalia elongata Himel1 dioecious)
ATGGCTTCGGGGTCGAAACAAGGCCTTGCGTCATACACACTTGACGGACG
AAGCGAGCATCTCGGTGGGTTGGTCGTCTTCGTCTGGGAGAATGATGACT
CATCGCACCTGATGGCTTCGGGGTCGAAACAAGGCCTTGCGTCATACACA
CTTGACGGACGAAGCGAGCATCTCGGTGGGTTGGTCGTCTTCGTCTGGGA
GAATGATGACTCATCGCACCTGGTTTACTGGACCATTCGGGAGGGAGGAG
GAACACTCGTCTGTGGCGGTTCCAGGATCTGCGCGTCGACTCACGAGCCA
CATCCCACATGCGTCGGCCACTGGAAGTGCTACGGGGGAACCGAATTAAA
CAGGGAGTCACCAGTAAAGACTACTTTATTCCTGTCTTGCGGGTGTTCTT
ATTCGAAGGGAATGGTGCGAGGTTCGGAGAAGAAAGTGGTAGCCCGCGAT
TTGAAGGAAGTGACAGTCACCAACCCCTCAACATGTGTAGATGAGTTGAT
CGTATCGGTCTCCTTTGTCTTGGCCCTTCTGGCTTTTAGCGTAAATTGCT
GCTTAGAACGGCCCTTTAGACGATCTTTCAAGCCTGCGACCAGTTTAAAA
TGAGTTTACTGGACCATTCGGGAGGGAGGAGGAACACTCGTCTGTGGCGG
TTCCAGGATCTGCGCGTCGACTCACGAGCCACATCCCACATGCGTCGGCC
ACTGGAAGTGCTACGGGGGAACCGAATTAAACAGGGAGTCACCAGTAAAG
ACTACTTTATTCCTGTCTTGCGGGTGTTCTTATTCGAAGGGAATGGTGCG
AGGTTCGGAGAAGAAAGTGGTAGCCCGCGATTTGAAGGAAGTGACAGTCA
CCAACCCCTCAACATGTGTAGATGAGTTGATCGTATCGGTCTCCTTTGTC
TTGGCCCTTCTGGCTTTTAGCGTAAATTGCTGCTTAGAACGGCCCTTTAG
ACGATCTTTCAAGCCTGCGACCAGTTTAAAATGA
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