mRNA_H-elongata_contig110177.833.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110177.833.1
Unique NamemRNA_H-elongata_contig110177.833.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Match: D8LSB2_ECTSI (Sacchrp_dh_NADP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSB2_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 2.820e-38
Identity = 62/89 (69.66%), Postives = 76/89 (85.39%), Query Frame = 1
Query:    1 TLPTIIADSMDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTWVREMIDKHHDQADRTGAKIVPSCGFDSIPA 267
            TLPTI+ADS+D E++  MV+QAKVI+TTVGPY  YG+K+V  C+  GVH CDL GES WV+ +IDKHH++A+RTGAKIVPSCGFDSIPA
Sbjct:   67 TLPTIVADSLDDEAVGGMVSQAKVIITTVGPYAHYGSKVVAACSAAGVHCCDLTGESLWVKGLIDKHHEEAERTGAKIVPSCGFDSIPA 155          
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Match: A0A836CMB4_9STRA (Sacchrp_dh_NADP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMB4_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.780e-31
Identity = 58/88 (65.91%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    4 LPTIIADSMDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTWVREMIDKHHDQADRTGAKIVPSCGFDSIPA 267
            LP +IADS D+ SL+ M  QA V++TTVGPY +YG  LVE CAR G HLCDL GES WV E+I+K    A  TGAKIVPSCGFDSIPA
Sbjct:   73 LPHLIADSHDEASLEAMSGQADVVITTVGPYLKYGTILVEACARAGTHLCDLTGESLWVEEIIEKFDKVAQSTGAKIVPSCGFDSIPA 160          
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Match: A0A2D5LG04_9GAMM (Saccharopine dehydrogenase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D5LG04_9GAMM)

HSP 1 Score: 117 bits (292), Expect = 8.590e-31
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    4 LPTIIADSMDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTWVREMIDKHHDQADRTGAKIVPSCGFDSIPA 267
            +P + ADS D +SL+++V Q KVILTTVGPY RYG++LV  CA+ G H CDL GES W+REMI  H   A  +GA+IV +CGFDSIP+
Sbjct:   60 IPVLTADSHDSDSLEKLVQQTKVILTTVGPYARYGSELVAACAQHGTHYCDLTGESLWMREMITAHQQTARDSGARIVHTCGFDSIPS 147          
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Match: A0A349X1N5_9GAMM (Saccharopine dehydrogenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A349X1N5_9GAMM)

HSP 1 Score: 120 bits (300), Expect = 1.800e-30
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 TLPTIIADSMDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTWVREMIDKHHDQADRTGAKIVPSCGFDSIPA 267
            T+P I+ADS D +SL  +  +A  I+TTVGPY  YG+KLV+ CA EG H  DLAGE+ W+REMID HH+ A +TGAKIV SCGFDSIP+
Sbjct:   59 TVPCILADSDDLDSLRALAKKATSIITTVGPYAYYGSKLVQACAEEGTHYVDLAGETPWMREMIDAHHETAQKTGAKIVHSCGFDSIPS 147          
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Match: A0A848LMI0_9DELT (Saccharopine dehydrogenase n=1 Tax=Pyxidicoccus fallax TaxID=394095 RepID=A0A848LMI0_9DELT)

HSP 1 Score: 118 bits (296), Expect = 8.610e-30
Identity = 54/88 (61.36%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    4 LPTIIADSMDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTWVREMIDKHHDQADRTGAKIVPSCGFDSIPA 267
            LP + AD+ D  SLD +VA+ KV+ TTVGPY RYG++LV  CAR G   CDL GE  W+R MID HHDQA  TGA+IV +CGFDSIP+
Sbjct:   65 LPLLKADAKDAASLDALVARTKVVCTTVGPYARYGSELVAACARAGTDYCDLTGEVQWMRRMIDAHHDQARATGARIVHTCGFDSIPS 152          
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Match: A0A2D6V8P4_9GAMM (Saccharopine dehydrogenase n=4 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2D6V8P4_9GAMM)

HSP 1 Score: 118 bits (295), Expect = 9.530e-30
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = 1
Query:    4 LPTIIADSMDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTWVREMIDKHHDQADRTGAKIVPSCGFDSIPA 267
            +P + ADS D +SL+++V QA+VILTTVGPY RYG++LV  CA+ G H CDL GES W+REMI  H   A  +GA+IV +CGFDSIP+
Sbjct:   60 IPVLTADSHDSDSLEKLVQQARVILTTVGPYARYGSELVAACAQHGTHYCDLTGESLWMREMITAHQQTAQDSGARIVHTCGFDSIPS 147          
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Match: A0A2E6E9Z9_9GAMM (Saccharopine dehydrogenase n=1 Tax=Woeseia sp. TaxID=1980636 RepID=A0A2E6E9Z9_9GAMM)

HSP 1 Score: 118 bits (295), Expect = 1.050e-29
Identity = 53/85 (62.35%), Postives = 66/85 (77.65%), Query Frame = 1
Query:   13 IIADSMDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTWVREMIDKHHDQADRTGAKIVPSCGFDSIPA 267
            IIADS D+ +LD M A+ KVIL+TVGPY +YG+ LVE+C + G   CDL GES W+R MIDKH D A ++GA+IV SCGFDSIP+
Sbjct:   70 IIADSHDRATLDLMTARTKVILSTVGPYAKYGSDLVESCIKNGTDYCDLTGESQWIRRMIDKHEDDAKKSGARIVMSCGFDSIPS 154          
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Match: A0A3A8J8B6_9DELT (Saccharopine dehydrogenase n=5 Tax=Myxococcaceae TaxID=31 RepID=A0A3A8J8B6_9DELT)

HSP 1 Score: 118 bits (295), Expect = 1.140e-29
Identity = 52/89 (58.43%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 TLPTIIADSMDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTWVREMIDKHHDQADRTGAKIVPSCGFDSIPA 267
            +LP +IAD+ D  SLD +VA+ +V+++TVGPYNRYG++LV  CAR G   CDL GE  W+R+MID H  QA  TGA+IV +CGFDSIP+
Sbjct:   65 SLPVVIADAKDAASLDALVARTRVVISTVGPYNRYGSELVAACARAGTDYCDLTGEVHWMRKMIDAHDTQARETGARIVHTCGFDSIPS 153          
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Match: A0A293NBL8_9GAMM (Saccharopine dehydrogenase n=5 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A293NBL8_9GAMM)

HSP 1 Score: 117 bits (294), Expect = 1.530e-29
Identity = 52/88 (59.09%), Postives = 66/88 (75.00%), Query Frame = 1
Query:    4 LPTIIADSMDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTWVREMIDKHHDQADRTGAKIVPSCGFDSIPA 267
            +P + ADS D+ES+  +V QA+VILTTVGPY RYG+ LV  CA+ G H CDL GE  W+REMI  H ++A  TGA+IV +CGFDSIP+
Sbjct:   55 IPVLTADSGDEESISALVQQARVILTTVGPYARYGSSLVAACAKHGTHYCDLTGEVHWMREMITAHQEEAKSTGARIVHTCGFDSIPS 142          
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Match: UPI0019D6C833 (saccharopine dehydrogenase NADP-binding domain-containing protein n=2 Tax=Pyxidicoccus TaxID=224458 RepID=UPI0019D6C833)

HSP 1 Score: 117 bits (293), Expect = 2.220e-29
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 1
Query:    4 LPTIIADSMDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTWVREMIDKHHDQADRTGAKIVPSCGFDSIPA 267
            LP ++AD+ D  SLD +V + +V+ TTVGPY +YGN+LV  CAR G   CDL GE  W+R MID HH+QA  TGA+IV +CGFDSIP+
Sbjct:   65 LPLLVADAKDPASLDALVTRTRVVCTTVGPYAKYGNELVAACARAGTDYCDLTGEVQWMRRMIDAHHEQARATGARIVHTCGFDSIPS 152          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110177.833.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSB2_ECTSI2.820e-3869.66Sacchrp_dh_NADP domain-containing protein n=2 Tax=... [more]
A0A836CMB4_9STRA2.780e-3165.91Sacchrp_dh_NADP domain-containing protein n=1 Tax=... [more]
A0A2D5LG04_9GAMM8.590e-3159.09Saccharopine dehydrogenase (Fragment) n=1 Tax=Gamm... [more]
A0A349X1N5_9GAMM1.800e-3061.80Saccharopine dehydrogenase n=1 Tax=Gammaproteobact... [more]
A0A848LMI0_9DELT8.610e-3061.36Saccharopine dehydrogenase n=1 Tax=Pyxidicoccus fa... [more]
A0A2D6V8P4_9GAMM9.530e-3059.09Saccharopine dehydrogenase n=4 Tax=Gammaproteobact... [more]
A0A2E6E9Z9_9GAMM1.050e-2962.35Saccharopine dehydrogenase n=1 Tax=Woeseia sp. Tax... [more]
A0A3A8J8B6_9DELT1.140e-2958.43Saccharopine dehydrogenase n=5 Tax=Myxococcaceae T... [more]
A0A293NBL8_9GAMM1.530e-2959.09Saccharopine dehydrogenase n=5 Tax=Gammaproteobact... [more]
UPI0019D6C8332.220e-2957.95saccharopine dehydrogenase NADP-binding domain-con... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110177contigH-elongata_contig110177:217..1397 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.0
Seed ortholog evalue3.1e-26
Seed eggNOG ortholog2880.D8LSB2
KEGG koko:K09527,ko:K17261
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG3268@1,KOG2733@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size267
Cds size240
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110177.833.1prot_H-elongata_contig110177.833.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110177 217..1370 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.3739169-CDS-H-elongata_contig110177:216..4141622929628.3739169-CDS-H-elongata_contig110177:216..414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110177 217..414 -
1691679097.3964036-CDS-H-elongata_contig110177:216..4141691679097.3964036-CDS-H-elongata_contig110177:216..414Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110177 217..414 -
1622929628.3892906-CDS-H-elongata_contig110177:1328..13701622929628.3892906-CDS-H-elongata_contig110177:1328..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110177 1329..1370 -
1691679097.409073-CDS-H-elongata_contig110177:1328..13701691679097.409073-CDS-H-elongata_contig110177:1328..1370Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110177 1329..1370 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.4023974-UTR-H-elongata_contig110177:1370..13971622929628.4023974-UTR-H-elongata_contig110177:1370..1397Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110177 1371..1397 -
1691679097.4169157-UTR-H-elongata_contig110177:1370..13971691679097.4169157-UTR-H-elongata_contig110177:1370..1397Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110177 1371..1397 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110177.833.1

>prot_H-elongata_contig110177.833.1 ID=prot_H-elongata_contig110177.833.1|Name=mRNA_H-elongata_contig110177.833.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MDQESLDRMVAQAKVILTTVGPYNRYGNKLVETCAREGVHLCDLAGESTW
VREMIDKHHDQADRTGAKIVPSCGFDSIPA
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mRNA from alignment at H-elongata_contig110177:217..1397-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110177.833.1 ID=mRNA_H-elongata_contig110177.833.1|Name=mRNA_H-elongata_contig110177.833.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1181bp|location=Sequence derived from alignment at H-elongata_contig110177:217..1397- (Himanthalia elongata Himel1 dioecious)
ACGCTTCCGACGATTATCGCCGACAGCATGGATCAAGAGTCGTTGGACAG AATGGTGGCCCAGGCGAAGGTACTGTTTAAACAATCGCTTTCTTACTTTC CAACATATTACAATTTGTACGCAAAATGGATGGTAAAATACCGTACAATT ATATCAACCGTATCCTGCCTGTGTATATATTCGCACAAAGGTTCTCCCAA CACCTGCCTAATGTAGGACATACCCGTGACAAAGAACCATGCTTATTGGA GTTTTTTATGAGTCTGCTGCGGAAAACATGTGTGGGGGGGTCCCCCAGGA GGCGTTCTGGGAGTCTTATCGGGCGAGGCAGCGTGCCAGTTATTGTCACG ACAAAAATATCAAATATAAAATGGGACAGGGAGTCTCCTACCACAATAAT AGTGATTCATAGGCTCTTACGATTTGTCGAATGCCTCACAATGTACTTAC TGATTTAGAGACACGTCAGAAATGTTTTTCTCGACTCCTTCACGATCACA CTCACGATCGGTCTGTGTAAATAAAATAAATTACAGGCTCGTATCGAGAA ACCTCAGGCGGGTTATTTTATTGATTTCGTTACAGCCACACTATATTATG CTTCTATATCTAGCGGTGATCCCAGAAATATGTTCCCCTCGTCTTCTGCT AATCTCTTAAGAGTTGACGTCGGAACCAAAGAACCAAACCTCGAACAATT TTATTGACGAAACACGAGTCTCGCCGACGTGGCACCTGACTTTTCGTCTA CGGCTGGTTGCCTCCTCCAGCGCGAAAGAGATACGAGTCTTTGATCTCGA TCATTCGCAGACGTTTACAAATCGATAACTCTCTTAGTACCAGTAGCTTT GCTGCGCTCTCTTCGACAATGCGTACTGTACTATACACCCCGCCTTTTTC ATTCTCCTCCCACTCACCTTTGGCCTCCGGCACCAAAACGTGGTCGAAAT CGACCTCGACCGTCTTGGCGCCGCCGGAGGCAGGTCATTTTGACGACCGT GGGTCCCTACAATCGGTACGGAAACAAGCTTGTGGAGACGTGTGCGAGGG AGGGGGTTCACCTCTGTGATCTGGCAGGTGAGTCGACTTGGGTGAGGGAA ATGATTGATAAGCACCATGATCAAGCGGATCGCACGGGCGCGAAGATCGT CCCCTCCTGTGGCTTCGACAGCATTCCGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig110177:217..1397-

>mRNA_H-elongata_contig110177.833.1 ID=mRNA_H-elongata_contig110177.833.1|Name=mRNA_H-elongata_contig110177.833.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig110177:217..1397- (Himanthalia elongata Himel1 dioecious)
ATGGATCAAGAGTCGTTGGACAGAATGGTGGCCCAGGCGAAGATGGATCA
AGAGTCGTTGGACAGAATGGTGGCCCAGGCGAAGGTCATTTTGACGACCG
TGGGTCCCTACAATCGGTACGGAAACAAGCTTGTGGAGACGTGTGCGAGG
GAGGGGGTTCACCTCTGTGATCTGGCAGGTGAGTCGACTTGGGTGAGGGA
AATGATTGATAAGCACCATGATCAAGCGGATCGCACGGGCGCGAAGATCG
TCCCCTCCTGTGGCTTCGACAGCATTCCGGCGGTCATTTTGACGACCGTG
GGTCCCTACAATCGGTACGGAAACAAGCTTGTGGAGACGTGTGCGAGGGA
GGGGGTTCACCTCTGTGATCTGGCAGGTGAGTCGACTTGGGTGAGGGAAA
TGATTGATAAGCACCATGATCAAGCGGATCGCACGGGCGCGAAGATCGTC
CCCTCCTGTGGCTTCGACAGCATTCCGGCG
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