mRNA_H-elongata_contig110104.829.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110104.829.1
Unique NamemRNA_H-elongata_contig110104.829.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Match: A0A6H5L5E2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5E2_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 4.440e-38
Identity = 74/129 (57.36%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQAAWL-GKGGRPGTIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVNLEFIQLTMSLNIELFQLPSHSSHMTQPL 384
            KV G  RSNSREN TVV TI+AA  T  P II+KGQR+QA W+ G+ G P    A I SSFMQG VFVNY+ +FH+ +++ GL +  PH+LVLDGHA  V  E ++L   LNI L+Q+PSHSSH+ QPL
Sbjct:  190 KVGGAMRSNSRENVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVIDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPL 318          
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Match: A0A6H5JRA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRA3_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 9.450e-38
Identity = 76/129 (58.91%), Postives = 95/129 (73.64%), Query Frame = 1
Query:    1 KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQAAW-LGKGGRPGTIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVNLEFIQLTMSLNIELFQLPSHSSHMTQPL 384
            KVVG+ RSNSRENTTVVATI+A   T  P IIFKGQR+QA W + + G  G  +     SFMQG +F+ Y+ +FHK + + GL D KPHIL+LDGHA  V++E I+L M+L I LFQLPSH+SH+TQPL
Sbjct:  203 KVVGSMRSNSRENTTVVATISADGHTWAPTIIFKGQRLQADWFVERNGLEGAKYTCTDYSFMQGDLFIAYLKDFHKQLCDRGLLDGKPHILLLDGHASHVSVEVIKLAMNLKIILFQLPSHTSHITQPL 331          
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Match: A0A6H5K717_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K717_9PHAE)

HSP 1 Score: 135 bits (340), Expect = 1.210e-37
Identity = 70/129 (54.26%), Postives = 88/129 (68.22%), Query Frame = 1
Query:    1 KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQAAWL-GKGGRPGTIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVNLEFIQLTMSLNIELFQLPSHSSHMTQPL 384
            KVVG  RSNSREN TVV TI+ A  T  P II+KGQR+QA W+ G+ G P    A   SSFMQG  FVNY+ +FH+ +++  L +  PH+L LDGHA  V  E ++L   LNI L+Q+PSHSSH+ QPL
Sbjct:   10 KVVGAMRSNSRENVTVVVTISTAGATLAPWIIYKGQRLQADWVEGRNGPPNARLAVTDSSFMQGIAFVNYVRDFHRQLLDRDLINGTPHVLALDGHASHVTYEVVKLARELNIVLYQIPSHSSHVVQPL 138          
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Match: A0A6H5JFM5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM5_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 3.550e-37
Identity = 77/129 (59.69%), Postives = 96/129 (74.42%), Query Frame = 1
Query:    1 KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQA-AWLGKGGRPGTIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVNLEFIQLTMSLNIELFQLPSHSSHMTQPL 384
            KVVG+ R+NSRENTTVVATI+A   T  P IIFKGQR+QA  ++ + G  G       SSFMQG VF+NY+ +FHK + + GL D KPHIL+LDGHA  V++E I+L M+L I LFQLPSH+SH+TQPL
Sbjct:  189 KVVGSMRANSRENTTVVATISADGHTWAPTIIFKGQRLQADCFVERNGPEGARHTCTDSSFMQGDVFMNYLKDFHKQLGDRGLLDGKPHILLLDGHASHVSVEVIKLAMNLKIILFQLPSHTSHITQPL 317          
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Match: A0A6H5KGL1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL1_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.840e-37
Identity = 75/129 (58.14%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    1 KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQAAWLG-KGGRPGTIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVNLEFIQLTMSLNIELFQLPSHSSHMTQPL 384
            KVV + RSNSRENTTVV TI+A   T  P IIFKGQR+Q  W   + G     +    SSFMQG VF+ Y+ +FHK + + G+ D KPHILVLDGHA  V+ EFI+L M LNI LF+LPSH+SH+TQPL
Sbjct:   10 KVVESMRSNSRENTTVVTTISANGATWAPTIIFKGQRLQPDWFAERNGPKDARYTCTDSSFMQGDVFIMYLKDFHKQLDDRGVLDGKPHILVLDGHASHVSYEFIKLAMDLNIILFKLPSHTSHITQPL 138          
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Match: A0A6H5JK80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK80_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 5.780e-37
Identity = 73/129 (56.59%), Postives = 92/129 (71.32%), Query Frame = 1
Query:    1 KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQAAWL-GKGGRPGTIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVNLEFIQLTMSLNIELFQLPSHSSHMTQPL 384
            KVVG  RSNSR+N TVV TI+AA  T  P II+KGQR+QA W+ G+ G P    A   SSFMQG VFVNY+ +FH+ +++ GL +  PH+LVLDGHA  V  E ++L   LNI L+Q+PSHSSH+ QPL
Sbjct:  198 KVVGAMRSNSRDNVTVVVTISAAGATLAPWIIYKGQRMQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVVKLARDLNIVLYQIPSHSSHVVQPL 326          
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Match: A0A6H5KN20_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN20_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 9.250e-37
Identity = 75/129 (58.14%), Postives = 93/129 (72.09%), Query Frame = 1
Query:    1 KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQAAW-LGKGGRPGTIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVNLEFIQLTMSLNIELFQLPSHSSHMTQPL 384
            KVVG  RSNSRENTTVVATI+    T  P IIFKGQR+QA W + + G  G  +    SSFMQG VF+ Y+ +FHK + + GL D KPHIL+LDGHA  V+++  +L M+L I LFQLPSH+SH+TQPL
Sbjct:  244 KVVGAMRSNSRENTTVVATISVDGHTWAPTIIFKGQRLQADWFVERNGPEGARYTCTDSSFMQGDVFIAYLKDFHKQLGDRGLLDGKPHILLLDGHASHVSVQVFRLAMNLRIILFQLPSHTSHITQPL 372          
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Match: A0A6H5JV04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV04_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 9.510e-37
Identity = 75/129 (58.14%), Postives = 93/129 (72.09%), Query Frame = 1
Query:    1 KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQAAWLG-KGGRPGTIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVNLEFIQLTMSLNIELFQLPSHSSHMTQPL 384
            KVV + R+NSRENTT+V TI+A  +T  P IIFKGQR+Q  W   K G P   +    SSFMQG VF+ Y+ +FH+ + + GL D KPHIL+LDGHA  V++E IQL M LNI LFQLPSH+SH+TQPL
Sbjct:  188 KVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPL 316          
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Match: B2KWI5_ECTSI (Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=B2KWI5_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.510e-36
Identity = 74/129 (57.36%), Postives = 91/129 (70.54%), Query Frame = 1
Query:    1 KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQAAWL-GKGGRPGTIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVNLEFIQLTMSLNIELFQLPSHSSHMTQPL 384
            KVVG  RSNSRE  TVV TI+AA  T  P II+KGQR+QA W+ G+ G P    A   SSFMQG VFVNY+ +FH+ +++ GL +  PH+LVLDGHA  V  E I+L   LNI L+Q+PSHSSH+ QPL
Sbjct:  190 KVVGAMRSNSRETVTVVVTISAAGATLAPWIIYKGQRLQADWVKGRNGPPNARLAVTDSSFMQGTVFVNYIRDFHRQLLDRGLINGTPHVLVLDGHASHVTYEVIKLARDLNIVLYQIPSHSSHVVQPL 318          
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Match: A0A6H5JJ12_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ12_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 1.580e-36
Identity = 75/129 (58.14%), Postives = 93/129 (72.09%), Query Frame = 1
Query:    1 KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQAAWLG-KGGRPGTIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVNLEFIQLTMSLNIELFQLPSHSSHMTQPL 384
            KVV + R+NSRENTT+V TI+A  +T  P IIFKGQR+Q  W   K G P   +    SSFMQG VF+ Y+ +FH+ + + GL D KPHIL+LDGHA  V++E IQL M LNI LFQLPSH+SH+TQPL
Sbjct:  429 KVVESVRANSRENTTLVTTISADGSTWAPTIIFKGQRLQPDWFAEKNGPPDARYTCTDSSFMQGNVFIKYLKDFHQQLCKRGLIDGKPHILLLDGHASHVSVEVIQLAMELNIVLFQLPSHTSHITQPL 557          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110104.829.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5E2_9PHAE4.440e-3857.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRA3_9PHAE9.450e-3858.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K717_9PHAE1.210e-3754.26DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JFM5_9PHAE3.550e-3759.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGL1_9PHAE4.840e-3758.14DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JK80_9PHAE5.780e-3756.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN20_9PHAE9.250e-3758.14DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JV04_9PHAE9.510e-3758.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B2KWI5_ECTSI1.510e-3657.36Transposase n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JJ12_9PHAE1.580e-3658.14Integrase catalytic domain-containing protein n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110104contigH-elongata_contig110104:1466..1849 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score87.0
Seed ortholog evalue6.8e-15
Seed eggNOG ortholog7029.ACYPI48647-PA
EggNOG free text desc.helix-turn-helix, Psq domain
EggNOG OGs2ATEE@1,2RZRY@2759,39MYV@33154,3CPI2@33208,3E5P1@33213
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929628.179169-CDS-H-elongata_contig110104:1465..18491622929628.179169-CDS-H-elongata_contig110104:1465..1849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110104 1466..1849 -
1691679097.3199744-CDS-H-elongata_contig110104:1465..18491691679097.3199744-CDS-H-elongata_contig110104:1465..1849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110104 1466..1849 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110104.829.1prot_H-elongata_contig110104.829.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110104 1466..1849 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110104.829.1

>prot_H-elongata_contig110104.829.1 ID=prot_H-elongata_contig110104.829.1|Name=mRNA_H-elongata_contig110104.829.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=128bp
KVVGTKRSNSRENTTVVATINAAETTTPPLIIFKGQRVQAAWLGKGGRPG
TIFAAIGSSFMQGAVFVNYMWNFHKYIVEHGLADSKPHILVLDGHALDVN
LEFIQLTMSLNIELFQLPSHSSHMTQPL
back to top

mRNA from alignment at H-elongata_contig110104:1466..1849-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110104.829.1 ID=mRNA_H-elongata_contig110104.829.1|Name=mRNA_H-elongata_contig110104.829.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=384bp|location=Sequence derived from alignment at H-elongata_contig110104:1466..1849- (Himanthalia elongata Himel1 dioecious)
AAGGTAGTCGGTACCAAGCGTTCCAACTCCAGAGAAAACACGACGGTGGT CGCTACCATCAATGCGGCCGAGACCACCACACCGCCGCTGATAATCTTCA AAGGCCAACGTGTGCAAGCGGCATGGCTCGGGAAAGGCGGGCGTCCGGGG ACGATATTCGCCGCCATCGGCTCCTCTTTCATGCAGGGGGCTGTCTTCGT CAATTATATGTGGAACTTTCACAAATACATTGTGGAACACGGCTTGGCGG ACAGTAAACCGCACATTCTCGTGCTTGACGGCCACGCTCTAGACGTGAAC TTGGAATTTATCCAGTTGACGATGAGCCTCAACATCGAGCTCTTTCAGCT CCCGTCTCACTCCTCCCACATGACCCAGCCGCTC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig110104:1466..1849-

>mRNA_H-elongata_contig110104.829.1 ID=mRNA_H-elongata_contig110104.829.1|Name=mRNA_H-elongata_contig110104.829.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=768bp|location=Sequence derived from alignment at H-elongata_contig110104:1466..1849- (Himanthalia elongata Himel1 dioecious)
AAGGTAGTCGGTACCAAGCGTTCCAACTCCAGAGAAAACACGACGGTGGT
CGCTACCATCAATGCGGCCGAGACCACCACACCGCCGCTGATAATCTTCA
AAGGCCAACGTGTGCAAGCGGCATGGCTCGGGAAAGGCGGGCGTCCGGGG
ACGATATTCGCCGCCATCGGCTCCTCTTTCATGCAGGGGGCTGTCTTCGT
CAATTATATGTGGAACTTTCACAAATACATTGTGGAACACGGCTTGGCGG
ACAGTAAACCGCACATTCTCGTGCTTGACGGCCACGCTCTAGACGTGAAC
TTGGAATTTATCCAGTTGACGATGAGCCTCAACATCGAGCTCTTTCAGCT
CCCGTCTCACTCCTCCCACATGACCCAGCCGCTCAAGGTAGTCGGTACCA
AGCGTTCCAACTCCAGAGAAAACACGACGGTGGTCGCTACCATCAATGCG
GCCGAGACCACCACACCGCCGCTGATAATCTTCAAAGGCCAACGTGTGCA
AGCGGCATGGCTCGGGAAAGGCGGGCGTCCGGGGACGATATTCGCCGCCA
TCGGCTCCTCTTTCATGCAGGGGGCTGTCTTCGTCAATTATATGTGGAAC
TTTCACAAATACATTGTGGAACACGGCTTGGCGGACAGTAAACCGCACAT
TCTCGTGCTTGACGGCCACGCTCTAGACGTGAACTTGGAATTTATCCAGT
TGACGATGAGCCTCAACATCGAGCTCTTTCAGCTCCCGTCTCACTCCTCC
CACATGACCCAGCCGCTC
back to top