mRNA_H-elongata_contig110087.827.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Match: A0A6H5JE39_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE39_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 8.800e-11 Identity = 37/94 (39.36%), Postives = 51/94 (54.26%), Query Frame = 1
Query: 4 DDESILRSFYTNWKELVTRLQQQPDHVWNTDETGALTV-EPAQRVIAERGQKVVGTKRSNSRKNTTVANTINAAGTATPPLIIFKDQRVQAAWL 282
DDE L +FY W+ + + PD + TD T + + + I G KV G +RSNSR+NTTV +I G P+II+K QR Q AW+
Sbjct: 500 DDEPRLEAFYGTWEAYLAETKLTPDRIIKTDGTSSTPQGTKSVKAIVPTGTKVPGARRSNSRENTTVVASIGPDGHTYNPIIIYKGQRTQPAWI 593
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Match: A0A6H5JY96_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY96_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 2.130e-10 Identity = 41/107 (38.32%), Postives = 56/107 (52.34%), Query Frame = 1
Query: 4 DDESILRSFYTNWKELVTRLQQQPDHVWNTDET------GALTVEPAQRVIAERGQKVVGTKRSNSRKNTTVANTINAAGTATPPLIIFKDQRVQAAWLGNGR-LPG 303
+DE L+ Y W V + D V NTDET A + A +G KV GT+R+NSR+NTT+ +TI A G P II+K QR+Q W+ + +PG
Sbjct: 146 NDEPRLKDVYKAWGAYVMENKLTADRVLNTDETVEFWQGSTPQGTKAGKAFALKGSKVPGTRRANSRENTTIVSTIGADGHTYDPTIIYKGQRMQPDWVADDNGIPG 252
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Match: A0A821VNJ4_9BILA (Hypothetical protein n=1 Tax=Rotaria socialis TaxID=392032 RepID=A0A821VNJ4_9BILA) HSP 1 Score: 62.0 bits (149), Expect = 4.350e-9 Identity = 34/96 (35.42%), Postives = 50/96 (52.08%), Query Frame = 1
Query: 7 DESILRSFYTNWKELVTRL--QQQPDHVWNTDETGALTVEPAQRVIAERGQKVVGTKRSNSRKNTTVANTINAAGTATPPLIIFKDQRVQAAWLGN 288
D ++ SFY + RL +P+ +WN DET + I +G K V + R+N TV T+NAAG A PLI+F+ + +Q W+GN
Sbjct: 149 DPFVIYSFYELLGSEMNRLGIMNRPECIWNLDETSFPQDPSKTKTIGSKGNKTVRLTCGSGRENVTVLATVNAAGIALDPLIVFQGKNLQNTWIGN 244
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Match: UPI0011B6F57A (uncharacterized protein LOC115552764 n=2 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B6F57A) HSP 1 Score: 62.0 bits (149), Expect = 4.720e-9 Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 7 DESILRSFYTNWKELVTRLQQQPDHVWNTDETGALTVEPAQRVIAERGQKVVGTKRSNSRKN-TTVANTINAAGTATPPLIIFKDQRVQAAWLGNG 291
++S + F+ N K ++ R Q Q +WN DETG TV+ RV+A+ GQK VG+ S R TVA NA G PP IF +R + +L G
Sbjct: 34 NQSNVNLFHQNLKTVLDRHQFQAKDIWNIDETGVTTVQVQDRVVAQMGQKQVGSVTSAERGTLVTVALAGNAQGDLVPPFFIFPRKRFKDHFLRGG 129
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Match: UPI0011B4AB04 (uncharacterized protein LOC115560390 n=1 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B4AB04) HSP 1 Score: 60.8 bits (146), Expect = 1.030e-8 Identity = 37/96 (38.54%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 7 DESILRSFYTNWKELVTRLQQQPDHVWNTDETGALTVEPAQRVIAERGQKVVGTKRSNSRKN-TTVANTINAAGTATPPLIIFKDQRVQAAWLGNG 291
+++ + F+ N K ++ R Q Q +WN DETG TV+ RV+A+ GQK VG+ S R TVA NA G PP IF +R + +L G
Sbjct: 34 NQTNVNLFHQNLKTVLERHQFQAKDIWNIDETGVTTVQVPDRVVAQMGQKQVGSVTSAERGTLVTVALAGNAQGDLVPPFFIFPRKRFKDHFLRGG 129
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Match: UPI0011B76CBA (uncharacterized protein LOC115533531 n=3 Tax=Gadus morhua TaxID=8049 RepID=UPI0011B76CBA) HSP 1 Score: 60.1 bits (144), Expect = 2.340e-8 Identity = 37/89 (41.57%), Postives = 48/89 (53.93%), Query Frame = 1
Query: 28 FYTNWKELVTRLQQQPDHVWNTDETGALTVEPAQRVIAERGQKVVGTKRSNSRKN-TTVANTINAAGTATPPLIIFKDQRVQAAWLGNG 291
F+ N K ++ R Q Q +WN DETG TV+ RV+A+ GQK VG+ S R TVA NA G PP IF +R + +L G
Sbjct: 58 FHQNLKTVLDRHQFQAKDIWNIDETGVTTVQVPDRVVAQMGQKQVGSVTSAERGTLVTVALAGNAQGDLVPPFFIFPRKRFKDHFLRGG 146
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Match: A0A835LD38_SPOEX (PHD domain-containing protein n=1 Tax=Spodoptera exigua TaxID=7107 RepID=A0A835LD38_SPOEX) HSP 1 Score: 60.1 bits (144), Expect = 2.380e-8 Identity = 33/94 (35.11%), Postives = 54/94 (57.45%), Query Frame = 1
Query: 16 ILRSFYTNWKELVTRL--QQQPDHVWNTDETGA-LTVEPAQRVIAERGQKVVGTKRSNSRKNTTVANTINAAGTATPPLIIFKDQRVQAAWLGN 288
I+ + KE+ +L + P+ ++N DE G LT+ Q V+A++G K V + S ++ T+A +NA GTA PP++IFK QR++ N
Sbjct: 146 IVNDHFEKLKEVYDKLNLRDHPERIYNMDEKGCRLTIHHQQNVLAKKGAKRVHLQSSEHAESVTIAGCVNALGTAIPPMVIFKGQRLKPELYDN 239
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Match: UPI000C252A87 (uncharacterized protein LOC111510207 n=1 Tax=Leptinotarsa decemlineata TaxID=7539 RepID=UPI000C252A87) HSP 1 Score: 58.5 bits (140), Expect = 5.230e-8 Identity = 32/83 (38.55%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 19 LRSFYTNWKELVTRLQQQPDHVWNTDETGALTVEPAQRVIAERGQKVVGTKRSNSR-KNTTVANTINAAGTATPPLIIFKDQR 264
+ F++N +E V + + + ++WN DETG TV+ ++AERGQK VG+ S R KN+TV ++ G+ PP+ IF R
Sbjct: 152 VNRFFSNLEEAVDKYKFKDTNIWNVDETGITTVQDPGLILAERGQKRVGSITSWERGKNSTVVCAMSTGGSYVPPMFIFPRTR 234
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Match: A0A2A4J4D1_HELVI (Ig-like domain-containing protein n=3 Tax=Obtectomera TaxID=104431 RepID=A0A2A4J4D1_HELVI) HSP 1 Score: 58.9 bits (141), Expect = 6.030e-8 Identity = 33/98 (33.67%), Postives = 55/98 (56.12%), Query Frame = 1
Query: 1 ADDESILRSFYTNWKELVTRLQQQPDHVWNTDETGALTVEPAQRVIAERGQKVVGTKRSNSR-KNTTVANTINAAGTATPPLIIFKDQRVQAAWLGNG 291
A +++ + F+ EL+ + + P ++WN DETG V+ +++AE+GQK VG+ S R K T +NA G PP++I+ QR +A +G
Sbjct: 146 AFNKNEVGMFFKLLTELMDKYKFLPRNIWNVDETGISAVQDPGKIVAEKGQKRVGSITSGERGKTVTAVCAVNATGVYVPPMLIYPRQRHSSALETDG 243
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Match: A0A6H5L259_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L259_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 9.460e-7 Identity = 36/99 (36.36%), Postives = 50/99 (50.51%), Query Frame = 1
Query: 4 DDESILRSFYTNWKELVTRLQQQPDH-VWNTDETGALTVEPAQ-----RVIAERGQKVVGTKRSNSRKNTTVANTINAAGTATPPLIIFKDQRVQAAWL 282
DDE L +FY W+ + + P + T + Q + I G KV G +RSNSR+NTTV +I A G P+II+K QR+Q AW+
Sbjct: 23 DDEPRLEAFYETWEVYLAESKLTPSPPLCATARCELRSCSTPQGTKPGKAIVPTGTKVPGARRSNSRENTTVVASIGADGHTYNPIIIYKGQRMQPAWI 121 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110087.827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig110087.827.1 >prot_H-elongata_contig110087.827.1 ID=prot_H-elongata_contig110087.827.1|Name=mRNA_H-elongata_contig110087.827.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp ADDESILRSFYTNWKELVTRLQQQPDHVWNTDETGALTVEPAQRVIAERGback to top mRNA from alignment at H-elongata_contig110087:1345..2031- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig110087.827.1 ID=mRNA_H-elongata_contig110087.827.1|Name=mRNA_H-elongata_contig110087.827.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=687bp|location=Sequence derived from alignment at H-elongata_contig110087:1345..2031- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig110087:1345..2031- >mRNA_H-elongata_contig110087.827.1 ID=mRNA_H-elongata_contig110087.827.1|Name=mRNA_H-elongata_contig110087.827.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig110087:1345..2031- (Himanthalia elongata Himel1 dioecious)back to top |