prot_H-elongata_contig110081.826.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig110081.826.1
Unique Name	prot_H-elongata_contig110081.826.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	110

Homology

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BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 2.750e-55
Identity = 94/105 (89.52%), Postives = 102/105 (97.14%), Query Frame = 0

Query:    1 MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 105
            MGMREFEG+GCILADDMGLGKTLQSI VLWTLLKQG  KG+P+VRRA+VVCPTSLVKNWEAEIDKWLKGDCRVIALSE++R+QVVQSINLFLAS+VYRVLIVSYE
Sbjct:  157 MGMREFEGSGCILADDMGLGKTLQSIAVLWTLLKQGKAKGQPAVRRAVVVCPTSLVKNWEAEIDKWLKGDCRVIALSETTREQVVQSINLFLASMVYRVLIVSYE 261

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BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A836CHF7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA)

HSP 1 Score: 161 bits (408), Expect = 6.150e-45
Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 0

Query:    1 MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSV-RRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 105
            MG+R F G+GCILADDMGLGKTLQSI V+WTLLKQG  +G P V +R +VVCPTSLV NWEAE+DKWLKG C+ +ALSE+SRDQV+  INL+L+S +Y+VLIVSYE
Sbjct:    1 MGLRNFPGSGCILADDMGLGKTLQSIAVMWTLLKQGTARGGPPVAKRCVVVCPTSLVSNWEAELDKWLKGACKCVALSETSRDQVISGINLYLSSPIYKVLIVSYE 106

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BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A5B8N0Q2_9CHLO (SNF2-like helicase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0Q2_9CHLO)

HSP 1 Score: 145 bits (367), Expect = 2.590e-38
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0

Query:    2 GMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEK--GKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASL-VYRVLIVSYE 105
            G+++F+GNGCILADDMGLGKTLQ +T+LWTLLKQG E+  GKP V+RA++VCPTSLV NW++E DKWLKG  RV+AL+ES RD VV  I+ FL+    Y VLIVSYE
Sbjct:  432 GLKDFDGNGCILADDMGLGKTLQGLTLLWTLLKQGSEELGGKPVVKRAVIVCPTSLVGNWDSECDKWLKGKVRVLALAESKRDDVVMGIDQFLSPRRPYDVLIVSYE 538

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BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A7S3FLG9_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FLG9_9CHLO)

HSP 1 Score: 143 bits (360), Expect = 2.010e-37
Identity = 71/107 (66.36%), Postives = 86/107 (80.37%), Query Frame = 0

Query:    2 GMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEK--GKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASL-VYRVLIVSYE 105
            G+++FEGNGCILADDMGLGKTLQ +T+LWTLLKQG E+  GKP V+RA++VCPTSLV NW++E DKWLKG  RV AL+ES  D V+  I+ FL+    Y VLIVSYE
Sbjct:  189 GLKDFEGNGCILADDMGLGKTLQGLTLLWTLLKQGSEELGGKPVVKRAVIVCPTSLVGNWDSECDKWLKGKVRVCALAESKADDVIMQIDQFLSPRRPYDVLIVSYE 295

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BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: Q5CSV5_CRYPI (RAD54 like SWI/SNF2 ATpase n=5 Tax=Cryptosporidium TaxID=5806 RepID=Q5CSV5_CRYPI)

HSP 1 Score: 141 bits (355), Expect = 1.050e-36
Identity = 66/105 (62.86%), Postives = 84/105 (80.00%), Query Frame = 0

Query:    1 MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 105
            MG+R+F+GNGCILADDMGLGKTLQSIT+LWTLL QG + GKPSVR+A+VVCP SLVKNW +EI+KWL+G C+   ++E  R++VV +   F    + R+LI SYE
Sbjct:  153 MGLRDFDGNGCILADDMGLGKTLQSITILWTLLNQGFD-GKPSVRKAVVVCPASLVKNWASEIEKWLQGKCKCTPVAERDREKVVSAFAGFKYDTMSRILIASYE 256

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BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A2C6LCZ9_9APIC (Swi2 snf2-containing protein rad54 (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6LCZ9_9APIC)

HSP 1 Score: 136 bits (342), Expect = 1.280e-36
Identity = 66/106 (62.26%), Postives = 81/106 (76.42%), Query Frame = 0

Query:    1 MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQG-MEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 105
            MG++EF G GCILADDMGLGKTLQSIT+LWTLL+QG +  GKP+VRRA+VVCP SLV NW AEI+KWL+G C   A+++S R++VV     F      R+LI SYE
Sbjct:  183 MGLKEFHGEGCILADDMGLGKTLQSITILWTLLEQGILNDGKPAVRRAVVVCPASLVNNWAAEINKWLQGRCNCTAVADSCREKVVSKFEGFKYDRQSRILISSYE 288

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BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A7S2JIU9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JIU9_9DINO)

HSP 1 Score: 131 bits (329), Expect = 1.780e-36
Identity = 60/105 (57.14%), Postives = 78/105 (74.29%), Query Frame = 0

Query:    1 MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 105
            MG+RE+EG GCILADDMGLGKTLQS+ V+WTLL QG   GK + R+A+++CP SLVKNW AE DKWLKG C+ +A++ S    V  ++  F  S  +++LI SYE
Sbjct:   59 MGLREYEGFGCILADDMGLGKTLQSVAVIWTLLTQGGAGGKAACRKAVIICPASLVKNWAAEFDKWLKGRCKYVAIAVSGTAAVRGTLMTFRGSYEHKILIASYE 163

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BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A1J4MBW0_9CRYT (SNF2 family N-terminal domain-containing protein n=2 Tax=Cryptosporidium TaxID=5806 RepID=A0A1J4MBW0_9CRYT)

HSP 1 Score: 136 bits (343), Expect = 4.350e-35
Identity = 67/105 (63.81%), Postives = 80/105 (76.19%), Query Frame = 0

Query:    1 MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 105
            MG+R FEG+GCILADDMGLGKTLQSIT+LWTLL QG + GKP+VR+A+VVCP SLVKNW  EI+KWL G C   A++E  R++V+     F    V RVLI SYE
Sbjct:  151 MGLRAFEGHGCILADDMGLGKTLQSITILWTLLNQGFD-GKPAVRKAVVVCPASLVKNWAYEIEKWLLGKCPCTAVAEKDREKVISMFAGFKYDRVSRVLIASYE 254

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BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A090MF34_OSTTA (SNF2-related n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090MF34_OSTTA)

HSP 1 Score: 136 bits (342), Expect = 6.080e-35
Identity = 66/106 (62.26%), Postives = 86/106 (81.13%), Query Frame = 0

Query:    1 MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASL-VYRVLIVSYE 105
            MG+R+F+G GCILADDMGLGKTLQ IT+LWTLLKQG + G P+V+RA++VCPTSLV NW+ E +KWLKG  + + + +S+R +VV SI +FLA   V +V+IVSYE
Sbjct:  180 MGLRDFDGTGCILADDMGLGKTLQGITLLWTLLKQGFD-GAPAVKRALIVCPTSLVSNWDDECNKWLKGRVKTLPICDSTRAEVVSSIKMFLAPRHVAQVMIVSYE 284

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BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A7S2QYG4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S2QYG4_9CHLO)

HSP 1 Score: 130 bits (328), Expect = 1.290e-34
Identity = 63/106 (59.43%), Postives = 85/106 (80.19%), Query Frame = 0

Query:    1 MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASL-VYRVLIVSYE 105
            MG+R+F+G GCILADDMGLGKTLQ IT+LWTLL+QGM+ G P+V+RA++VCPTSLV NW+ E +KWL G  + + + +S+R +VV S+  FLA   + +V+IVSYE
Sbjct:  196 MGLRDFDGCGCILADDMGLGKTLQGITLLWTLLRQGMD-GTPTVKRALIVCPTSLVSNWDDECNKWLNGRVKTLPICDSTRAEVVSSVKSFLAPRHMAQVMIVSYE 300

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot

BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KSB9_9PHAE	2.750e-55	89.52	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CHF7_9STRA	6.150e-45	71.70	SNF2 family N-terminal domain-containing protein n...	[more]
A0A5B8N0Q2_9CHLO	2.590e-38	67.29	SNF2-like helicase n=1 Tax=Chloropicon primus TaxI...	[more]
A0A7S3FLG9_9CHLO	2.010e-37	66.36	Hypothetical protein n=1 Tax=Chloropicon roscoffen...	[more]
Q5CSV5_CRYPI	1.050e-36	62.86	RAD54 like SWI/SNF2 ATpase n=5 Tax=Cryptosporidium...	[more]
A0A2C6LCZ9_9APIC	1.280e-36	62.26	Swi2 snf2-containing protein rad54 (Fragment) n=1 ...	[more]
A0A7S2JIU9_9DINO	1.780e-36	57.14	Hypothetical protein (Fragment) n=1 Tax=Brandtodin...	[more]
A0A1J4MBW0_9CRYT	4.350e-35	63.81	SNF2 family N-terminal domain-containing protein n...	[more]
A0A090MF34_OSTTA	6.080e-35	62.26	SNF2-related n=2 Tax=Ostreococcus tauri TaxID=7044...	[more]
A0A7S2QYG4_9CHLO	1.290e-34	59.43	Hypothetical protein (Fragment) n=1 Tax=Ostreococc...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000330	SNF2-related, N-terminal domain	PFAM	PF00176	SNF2_N	coord: 8..106 e-value: 2.8E-19 score: 69.1
IPR038718	SNF2-like, N-terminal domain superfamily	GENE3D	3.40.50.10810		coord: 1..109 e-value: 1.4E-32 score: 114.5
None	No IPR available	PANTHER	PTHR45629	FAMILY NOT NAMED	coord: 2..106
None	No IPR available	PANTHER	PTHR45629:SF6	DNA REPAIR AND RECOMBINATION PROTEIN RAD54-LIKE	coord: 2..106
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 2..109 score: 10.371
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 7..105

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig110081	contig	H-elongata_contig110081:791..1750 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig110081.826.1	mRNA_H-elongata_contig110081.826.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig110081 791..1753 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig110081.826.1 ID=prot_H-elongata_contig110081.826.1|Name=mRNA_H-elongata_contig110081.826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp
MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVV
CPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVL
IVSYEVGDR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000330	SNF2_N
IPR038718	SNF2-like_sf
IPR014001	Helicase_ATP-bd
IPR027417	P-loop_NTPase