mRNA_H-elongata_contig110081.826.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A6H5KSB9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE) HSP 1 Score: 196 bits (497), Expect = 8.300e-56 Identity = 95/106 (89.62%), Postives = 103/106 (97.17%), Query Frame = 1
Query: 1 VMGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 318
VMGMREFEG+GCILADDMGLGKTLQSI VLWTLLKQG KG+P+VRRA+VVCPTSLVKNWEAEIDKWLKGDCRVIALSE++R+QVVQSINLFLAS+VYRVLIVSYE
Sbjct: 156 VMGMREFEGSGCILADDMGLGKTLQSIAVLWTLLKQGKAKGQPAVRRAVVVCPTSLVKNWEAEIDKWLKGDCRVIALSETTREQVVQSINLFLASMVYRVLIVSYE 261
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A836CHF7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA) HSP 1 Score: 161 bits (408), Expect = 6.410e-45 Identity = 76/106 (71.70%), Postives = 91/106 (85.85%), Query Frame = 1
Query: 4 MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSV-RRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 318
MG+R F G+GCILADDMGLGKTLQSI V+WTLLKQG +G P V +R +VVCPTSLV NWEAE+DKWLKG C+ +ALSE+SRDQV+ INL+L+S +Y+VLIVSYE
Sbjct: 1 MGLRNFPGSGCILADDMGLGKTLQSIAVMWTLLKQGTARGGPPVAKRCVVVCPTSLVSNWEAELDKWLKGACKCVALSETSRDQVISGINLYLSSPIYKVLIVSYE 106
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A5B8N0Q2_9CHLO (SNF2-like helicase n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8N0Q2_9CHLO) HSP 1 Score: 147 bits (370), Expect = 1.060e-38 Identity = 73/109 (66.97%), Postives = 89/109 (81.65%), Query Frame = 1
Query: 1 VMGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEK--GKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASL-VYRVLIVSYE 318
V G+++F+GNGCILADDMGLGKTLQ +T+LWTLLKQG E+ GKP V+RA++VCPTSLV NW++E DKWLKG RV+AL+ES RD VV I+ FL+ Y VLIVSYE
Sbjct: 430 VCGLKDFDGNGCILADDMGLGKTLQGLTLLWTLLKQGSEELGGKPVVKRAVIVCPTSLVGNWDSECDKWLKGKVRVLALAESKRDDVVMGIDQFLSPRRPYDVLIVSYE 538
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A7S3FLG9_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FLG9_9CHLO) HSP 1 Score: 144 bits (363), Expect = 8.150e-38 Identity = 72/109 (66.06%), Postives = 87/109 (79.82%), Query Frame = 1
Query: 1 VMGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEK--GKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASL-VYRVLIVSYE 318
V G+++FEGNGCILADDMGLGKTLQ +T+LWTLLKQG E+ GKP V+RA++VCPTSLV NW++E DKWLKG RV AL+ES D V+ I+ FL+ Y VLIVSYE
Sbjct: 187 VCGLKDFEGNGCILADDMGLGKTLQGLTLLWTLLKQGSEELGGKPVVKRAVIVCPTSLVGNWDSECDKWLKGKVRVCALAESKADDVIMQIDQFLSPRRPYDVLIVSYE 295
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: Q5CSV5_CRYPI (RAD54 like SWI/SNF2 ATpase n=5 Tax=Cryptosporidium TaxID=5806 RepID=Q5CSV5_CRYPI) HSP 1 Score: 141 bits (356), Expect = 8.000e-37 Identity = 66/106 (62.26%), Postives = 85/106 (80.19%), Query Frame = 1
Query: 1 VMGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 318
+MG+R+F+GNGCILADDMGLGKTLQSIT+LWTLL QG + GKPSVR+A+VVCP SLVKNW +EI+KWL+G C+ ++E R++VV + F + R+LI SYE
Sbjct: 152 LMGLRDFDGNGCILADDMGLGKTLQSITILWTLLNQGFD-GKPSVRKAVVVCPASLVKNWASEIEKWLQGKCKCTPVAERDREKVVSAFAGFKYDTMSRILIASYE 256
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A2C6LCZ9_9APIC (Swi2 snf2-containing protein rad54 (Fragment) n=1 Tax=Cystoisospora suis TaxID=483139 RepID=A0A2C6LCZ9_9APIC) HSP 1 Score: 136 bits (343), Expect = 9.470e-37 Identity = 66/107 (61.68%), Postives = 82/107 (76.64%), Query Frame = 1
Query: 1 VMGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQG-MEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 318
+MG++EF G GCILADDMGLGKTLQSIT+LWTLL+QG + GKP+VRRA+VVCP SLV NW AEI+KWL+G C A+++S R++VV F R+LI SYE
Sbjct: 182 LMGLKEFHGEGCILADDMGLGKTLQSITILWTLLEQGILNDGKPAVRRAVVVCPASLVNNWAAEINKWLQGRCNCTAVADSCREKVVSKFEGFKYDRQSRILISSYE 288
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A7S2JIU9_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JIU9_9DINO) HSP 1 Score: 131 bits (330), Expect = 1.300e-36 Identity = 60/106 (56.60%), Postives = 79/106 (74.53%), Query Frame = 1
Query: 1 VMGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 318
+MG+RE+EG GCILADDMGLGKTLQS+ V+WTLL QG GK + R+A+++CP SLVKNW AE DKWLKG C+ +A++ S V ++ F S +++LI SYE
Sbjct: 58 LMGLREYEGFGCILADDMGLGKTLQSVAVIWTLLTQGGAGGKAACRKAVIICPASLVKNWAAEFDKWLKGRCKYVAIAVSGTAAVRGTLMTFRGSYEHKILIASYE 163
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A090MF34_OSTTA (SNF2-related n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A090MF34_OSTTA) HSP 1 Score: 137 bits (346), Expect = 1.830e-35 Identity = 67/107 (62.62%), Postives = 87/107 (81.31%), Query Frame = 1
Query: 1 VMGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASL-VYRVLIVSYE 318
VMG+R+F+G GCILADDMGLGKTLQ IT+LWTLLKQG + G P+V+RA++VCPTSLV NW+ E +KWLKG + + + +S+R +VV SI +FLA V +V+IVSYE
Sbjct: 179 VMGLRDFDGTGCILADDMGLGKTLQGITLLWTLLKQGFD-GAPAVKRALIVCPTSLVSNWDDECNKWLKGRVKTLPICDSTRAEVVSSIKMFLAPRHVAQVMIVSYE 284
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A1J4MBW0_9CRYT (SNF2 family N-terminal domain-containing protein n=2 Tax=Cryptosporidium TaxID=5806 RepID=A0A1J4MBW0_9CRYT) HSP 1 Score: 137 bits (344), Expect = 3.310e-35 Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = 1
Query: 1 VMGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASLVYRVLIVSYE 318
+MG+R FEG+GCILADDMGLGKTLQSIT+LWTLL QG + GKP+VR+A+VVCP SLVKNW EI+KWL G C A++E R++V+ F V RVLI SYE
Sbjct: 150 LMGLRAFEGHGCILADDMGLGKTLQSITILWTLLNQGFD-GKPAVRKAVVVCPASLVKNWAYEIEKWLLGKCPCTAVAEKDREKVISMFAGFKYDRVSRVLIASYE 254
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Match: A0A7S2QYG4_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S2QYG4_9CHLO) HSP 1 Score: 132 bits (332), Expect = 3.430e-35 Identity = 64/107 (59.81%), Postives = 86/107 (80.37%), Query Frame = 1
Query: 1 VMGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVCPTSLVKNWEAEIDKWLKGDCRVIALSESSRDQVVQSINLFLASL-VYRVLIVSYE 318
VMG+R+F+G GCILADDMGLGKTLQ IT+LWTLL+QGM+ G P+V+RA++VCPTSLV NW+ E +KWL G + + + +S+R +VV S+ FLA + +V+IVSYE
Sbjct: 195 VMGLRDFDGCGCILADDMGLGKTLQGITLLWTLLRQGMD-GTPTVKRALIVCPTSLVSNWDDECNKWLNGRVKTLPICDSTRAEVVSSVKSFLAPRHMAQVMIVSYE 300 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110081.826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig110081.826.1 >prot_H-elongata_contig110081.826.1 ID=prot_H-elongata_contig110081.826.1|Name=mRNA_H-elongata_contig110081.826.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=110bp MGMREFEGNGCILADDMGLGKTLQSITVLWTLLKQGMEKGKPSVRRAIVVback to top mRNA from alignment at H-elongata_contig110081:791..1753- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig110081.826.1 ID=mRNA_H-elongata_contig110081.826.1|Name=mRNA_H-elongata_contig110081.826.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=963bp|location=Sequence derived from alignment at H-elongata_contig110081:791..1753- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig110081:791..1753- >mRNA_H-elongata_contig110081.826.1 ID=mRNA_H-elongata_contig110081.826.1|Name=mRNA_H-elongata_contig110081.826.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=660bp|location=Sequence derived from alignment at H-elongata_contig110081:791..1753- (Himanthalia elongata Himel1 dioecious)back to top |