mRNA_H-elongata_contig110065.823.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110065.823.1
Unique NamemRNA_H-elongata_contig110065.823.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A225WDK2_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WDK2_9STRA)

HSP 1 Score: 200 bits (509), Expect = 5.280e-54
Identity = 143/440 (32.50%), Postives = 224/440 (50.91%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQ--VGLLKKAMYGLVHARLVW*KSSGSSSRRRVFRYVKPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVT-----KTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTL-----------------------------------IKRYNIYGALGTLGSPTEGNRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQV 1203
            EP++  EA A  +   W++AI  E    I+ G W++V+ PKGK  L ++ +FK K D  G  E+YK RLV +G+ Q+K + YEE ++P     S+R++L+++    WE  Q DVD A+L  D+ EE+Y+  PE   +  K+  V  L +A+YGL  A   W K      + + F  +    C++ R   G  V +I +YVDDLL+ + T    ++    L + F  KD+G   + LG  + R+R   T + DQ  Y + + E+F +      KT   P+V     L K + P+ + E  +M+   YR +VG+L                                   I RY + G +G  G   +G    G  L+A+VD+DY    DTRRSVSG  + M   AI++  + Q+  A +S+E+EY++LA  V E+ FLR++
Sbjct:   40 EPKSFKEAMACGDSLHWRKAIDEEGRSLIAHGTWKLVKLPKGKRALTSKWIFKIKYDALGNIERYKARLVIRGYEQIKYIDYEEIFAPVIRLESLRLLLALVAINDWECEQTDVDTAFLNGDLAEEVYMIQPEGLEEAGKEDLVCQLLQALYGLKQAPRAWHKKLTDYLKSKGFVKLDSDSCIYVR-TGGSGVAIIGIYVDDLLLIADTASRIQEMKSMLSAGFKCKDMGAVHHILGLRVKRNRALKTLSIDQTAYAKGVIEKFNLMQLNPCKTPCDPNV----ILSKENCPKNEDERAQMKNKDYRGLVGSLMYLMTGSRPDIAFGIQCVSKYLNDPGLAHWNAAKRILRY-VKGTIG-YGLVIDGRSRTGKQLTAFVDSDYAKDIDTRRSVSGYVMQMGDCAITYSCKSQRTVALSSTEAEYMSLAHGVKEMLFLREL 472          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A2K3LA50_TRIPR (Putative retrotransposon Ty1-copia subclass protein (Fragment) n=2 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LA50_TRIPR)

HSP 1 Score: 203 bits (517), Expect = 9.440e-54
Identity = 140/422 (33.18%), Postives = 211/422 (50.00%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQ--VGLLKKAMYGLVHARLVW*KSSGSSSRRRVFRYVKPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVTKTS--IIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEG--------------------------NRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAE 1170
            +P T  +A +  E + W  A+  EM+  +S  VW +V  P G   +G + VFK K D  G  E+YK RLVA+GF Q + + Y E++SP S + S R++++++    +E  Q+DV  A+L   +EEE+Y++ PE +     +  V  L +++YGL  A   W            F      QC+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+G ASY +G  I RDRN G     Q  YI  + ERF +   S  + P V G R    S  PQ D E E M+ IPY   VG+L+      R +I  A+G LG                                R     +  + D+DY  C DTR+S SG   M+ASGA+SW S  Q +TA ++ E+E+V+  E
Sbjct:  432 DPETFSQAMSCKESNLWHDAMKEEMNSMVSNKVWDLVTLPNGVKAIGCKWVFKTKRDSQGNIERYKARLVAKGFTQREGIDYTETFSPVSKKDSFRVIMALVAHFNFELHQMDVKTAFLNGSLEEEVYMKQPEGFYSSEGENLVCKLNRSIYGLKQASRQWYLKFHEVITSFGFEENVMDQCIYQKV-SGSHICFLVLYVDDILLATNDKGMLYEVKQFLSRNFDMKDMGEASYVIGIKIHRDRNRGILGLSQEAYINKVLERFNMKNCSPSVAPIVKGDR-FELSQCPQNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAYAVGVLGRYQSNPGVDHWKAAKKVMRYLQGTKNFMLMYKRTDNLEVIGYSDSDYAGCIDTRKSTSGYVFMLASGAVSWRSAKQTLTATSTMEAEFVSCFE 851          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 197 bits (500), Expect = 3.700e-53
Identity = 142/435 (32.64%), Postives = 214/435 (49.20%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRD--FRKQVGLLKKAMYGLVHARLVW*KSSGSSSRRRVFRYVKPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVTKT-SIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLIKRYNIYGALGTL---------------------------------GSPTEGNRGGGTN---LSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLR 1197
            EPRT+ EA+AS EW QW+ AI  E+      G W++ E+P G  V+G+  VFK K D  G   KYK RLVAQGF Q+  + Y ++++P +  +SIR++ ++     WE  Q+DV  AYL  D+EEEI+++ P  +      ++V  L K +YGL  A   W K   ++     F        VF R      + ++ V VDDL +A+ +  +       L   F + DLG   + LG  I RDR   T +  Q  YI T+  RF +    S+  ++    +L    SP T  + ++MR I YRE +G+L     +Y A+GT                                  G+  E    GG N   +  + DAD+G+  D RRS+SG   ++  GA+SW S+ Q + A +S+E+EYVA+     E+ + R
Sbjct:   29 EPRTVDEAKASGEWPQWEAAIEDELGRMKKMGTWELAEKPPGANVVGSWWVFKIKRDASGAIAKYKARLVAQGFSQIPGVDYTDTFAPVAKLSSIRILAALAARFDWELHQMDVKNAYLNGDLEEEIFMKQPPGFPTPGQEQKVCHLFKPIYGLKQAGRRWYKKLCAAFLDMGFARSSVDHSVFFRHGPNGEIAIVAVSVDDLAIAANSVDEMSHIKSALKLKFEMTDLGEIHWLLGLEIKRDRRGRTISMLQRAYIDTILSRFNLQDAKSLTTAIDPSFSLTTDQSPSTPQQYDDMRNILYREAIGSL-----MYAAIGTRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGGDNANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTR 457          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A438HUL4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Vitis vinifera TaxID=29760 RepID=A0A438HUL4_VITVI)

HSP 1 Score: 196 bits (498), Expect = 5.080e-53
Identity = 135/433 (31.18%), Postives = 222/433 (51.27%), Query Frame = 1
Query:    1 LDPEPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYR--DFRKQVGLLKKAMYGLVHARLVW*KSSGSSSRRRVFRYVKPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVTKTSIIPS-VSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEG--------------------------NRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLR 1197
            L+ +P ++ + + SS   +W +A+  EM      GVW +VE PKG   +G + +FK K D  G   +YK RLVA+GF Q + + Y+E++SP S++ S R++++++     E  Q+DV  A+L  +++E IY+  PE +   D ++ V  LK+++YGL  A   W +          F+     QC++ +   G   +++V+YVDD+L+AS+      + +R L S F +KDLG AS+ LG  I RDR+ G     Q  YI  +  RFG++  +   + V+ G        P+ + E ++M + PY   VG+L+      R +I   +G LG                                R     + A+ D+D+  C D+RRS SG   M+A GA+SW S  Q + A+++ E+E++A  E  N   +LR
Sbjct:    3 LEDDPISLSQVKQSSNSEKWIKAMKDEMKSMKDNGVWDLVELPKGVKPIGCKWIFKTKRDSKGNIVRYKARLVAKGFTQKEGIDYKETFSPVSSKDSFRIIMALVAHYDLELHQMDVKTAFLNGNIDETIYMVQPENFESNDSKQLVCRLKRSIYGLKQASRQWYRKFDQVITSFGFKENTVDQCIYLK-FSGSKFIILVLYVDDILLASSDVGLLHETMRFLSSKFDMKDLGNASFVLGIQIHRDRSRGILGLSQKAYIDKVLSRFGMSNYAPGDTPVAKGDKFSLHQCPKNELEKKDMERFPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKKAKRVMRYLQRTKDYMLTYRRSSHLEIVAYSDSDFAGCLDSRRSTSGCIFMLAGGAVSWKSVKQTLVASSTMEAEFIACYEASNHGIWLR 434          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A2G8RWY5_9APHY (Transcription factor n=1 Tax=Ganoderma sinense ZZ0214-1 TaxID=1077348 RepID=A0A2G8RWY5_9APHY)

HSP 1 Score: 202 bits (515), Expect = 6.290e-53
Identity = 150/446 (33.63%), Postives = 221/446 (49.55%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQV--KCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQ--VGLLKKAMYGLVHARLVW*KSSGSSSRRRVFRYVKPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVTKTSIIP-SVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLIKRYNIYGALGTLGSPT----------------------------EGNRG----GGTN---LSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQV-KDFMIPQ 1224
            +PRT+ EA+ S +W QW+RAI  E D      V+ +VE P    ++G+++VF+ K D +G    +K RLVAQGF QV  +  H +E+++P S   SIR +LS+     WE RQ+DV  AYL   +EE +Y+ LP  +    +   V  LKK +YGL  A   W K+  ++     F        VF +   G   +++   VDDL +   +   +  AV D+   F + DLG   + LG  + RDR A T    Q  YI T+  RF + + + +   +  G  L    SP T  + E+MR +PYRE VG+L     +Y A+GT    T                            +G+R      GTN   L  + DAD+G+  + R S+SG    +  GAISW S+ Q V A +S+E+EY+AL     E  +LR V  D + P+
Sbjct: 1027 DPRTLEEARQSPDWPQWQRAIDAEYDNLRRHDVFDLVEPPPDANIVGSKLVFRVKHDAEGAVSGFKARLVAQGFSQVPGRDYHDDETFAPVSRLPSIRTILSLAARHDWELRQMDVKSAYLNGILEETVYMRLPPGFAPPEQSHLVCRLKKTLYGLKQAGRGWYKTLTAAMENMGFTRCVADHAVFYK-REGESAIIVAASVDDLTITGTSDLVDAFAV-DIKQRFEMSDLGDLHWILGIEVRRDRQARTIAISQRSYIDTIVSRFNLDEAAPLSIPLQPGSPLGNHQSPSTPRQFEDMRDVPYREAVGSL-----MYAAMGTRPDITFAVTALSQFMQNPGRAHWDALKRVLRYLKGSRELWLVYGTNNEGLRGYSDADWGSSTEHRHSISGYVFTLDGGAISWSSKKQNVVALSSTEAEYIALTHATKEAIWLRYVLSDILHPE 1465          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A177TV96_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TV96_9BASI)

HSP 1 Score: 202 bits (513), Expect = 1.030e-52
Identity = 132/434 (30.41%), Postives = 220/434 (50.69%), Query Frame = 1
Query:    1 LDPEPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQVGLLKKAMYGLVHARLVW*KSSGSSSRRRVFRYVKPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVTKTSIIPS--VSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLG------SPTE------------GNRGGG--------TNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQV 1203
            L+P+     + +   EW  WK A+  E+   +    W++VE PKG+ V+G+R V+K KLD+DGR  +YK RLVAQGF Q   + + ++++P +  ++IR+++S+ +AL      +D+  AYL   ++EE+Y++ P  Y D   +V LL++A+YGL  A   W  +         +  ++   C+F R       V++ VYVDD+++A+  K   +Q  ++  S F I D G  S+ LG  I  D +  T T  Q  YI+++  ++ +     +P+      R L     P T  +  +     +  ++G+L+      R +   A+G L       SP              G +  G        T L  W D+D+GT P TRRSVSG    +    +SW SR+Q   + +S+E+EY+AL+E   E +++R V
Sbjct:  689 LEPQNLKQAKQRPLEEWRHWKEAMDEEIGSLVEMKTWELVELPKGRDVVGSRWVYKLKLDRDGRASRYKGRLVAQGFTQRDGIDFSDTFAPVARLSTIRIIISLALALSLNLGSIDIKTAYLNGKLQEEVYMQQPPEYDDGTGRVCLLRRAIYGLKQAGRAWFDTLKGKLLSAGYTQIQSEPCLFVR-FGDAGPVILAVYVDDIVIAARGKEGVDQVKKEFASWFKITDNGELSHILGMRIDYDASKRTATLTQTAYIESLLRKYKMEHDDPLPTPMTEAARRL----GPNTAGQASQAEVHDFAALIGSLLWAVQGTRLDAAFAVGHLARFIANPSPAHFLAAKRILRFLLGTKEHGLKFTSSSKTPLKGWSDSDHGTDPSTRRSVSGYVFQLYGNTVSWRSRLQATVSISSTEAEYMALSEAAREAKWIRAV 1117          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A445FBE9_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445FBE9_GLYSO)

HSP 1 Score: 201 bits (512), Expect = 1.580e-52
Identity = 146/426 (34.27%), Postives = 218/426 (51.17%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQVG-----LLKKAMYGLVHARLVW*KSSGSSSRRRVFRYVKPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVT--KTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEGNRG--------------GGTN-------------LSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAE 1170
            +P T  +A +S E + W  A+  EMD   S  VW +VE P G   +G R VFK K D +G  E++K RLVA+GF Q + + Y E++SP S + S+R++L+++     E  Q+DV  A+L  D+EEE+Y++ PE    F   VG      L K++YGL  A   W            F       C+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+G ASY +G  I R+R+ G     Q  YI  + ERF +     S+ P V G + L  S  P+ D E E M+ IPY   VG+L+      R +I  A+G LG   + N G               GT              +  + D+D+  C D+RRS SG   M+ASGA+SW S  Q +TA ++ E+E+V+  E
Sbjct: 1045 DPETFSQAMSSKESNLWYNAMRDEMDSMASNQVWDLVELPVGVKAIGCRWVFKTKKDSEGNIERHKARLVAKGFTQREGIDYRETFSPVSKKDSLRVILALVAHFDLELHQMDVKTAFLNGDLEEEVYMKQPEG---FLSSVGEHLVCKLNKSIYGLKQASRQWYLKFHEVISSFSFEENVMDHCIYQKV-SGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKGDK-LALSQCPKNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGR-YQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDCLEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATSTMEAEFVSCFE 1464          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A445FAJ6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445FAJ6_GLYSO)

HSP 1 Score: 201 bits (512), Expect = 1.760e-52
Identity = 146/426 (34.27%), Postives = 218/426 (51.17%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQVG-----LLKKAMYGLVHARLVW*KSSGSSSRRRVFRYVKPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVT--KTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEGNRG--------------GGTN-------------LSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAE 1170
            +P T  +A +S E + W  A+  EMD   S  VW +VE P G   +G R VFK K D +G  E++K RLVA+GF Q + + Y E++SP S + S+R++L+++     E  Q+DV  A+L  D+EEE+Y++ PE    F   VG      L K++YGL  A   W            F       C+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+G ASY +G  I R+R+ G     Q  YI  + ERF +     S+ P V G + L  S  P+ D E E M+ IPY   VG+L+      R +I  A+G LG   + N G               GT              +  + D+D+  C D+RRS SG   M+ASGA+SW S  Q +TA ++ E+E+V+  E
Sbjct: 1819 DPETFSQAMSSKESNLWYNAMRDEMDSMASNQVWDLVELPVGVKAIGCRWVFKTKKDSEGNIERHKARLVAKGFTQREGIDYRETFSPVSKKDSLRVILALVAHFDLELHQMDVKTAFLNGDLEEEVYMKQPEG---FLSSVGEHLVCKLNKSIYGLKQASRQWYLKFHEVISSFSFEENVMDHCIYQKV-SGSKICFLVLYVDDILLATNDKGMLYEVKQFLSKNFDMKDMGEASYVIGIKIHRERSRGILGLSQETYINKVLERFNMKDCSPSVAPIVKGDK-LALSQCPKNDFEREHMKNIPYASAVGSLMYAQVCTRPDIAFAVGVLGR-YQSNPGIDHWKAAKKVMRYLQGTKDYMLMYRQTDCLEVIGYSDSDFAGCVDSRRSTSGYIFMLASGAVSWRSAKQTLTATSTMEAEFVSCFE 2238          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A329SK86_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SK86_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.280e-52
Identity = 141/404 (34.90%), Postives = 218/404 (53.96%), Query Frame = 1
Query:    4 DPEPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAYRDFRKQVGLLKKAMYGLVHA---RLVW*KSSGSSSRRRVFRYVKPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGV--TKTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLIKRYNI-YGALGTLGSPTEGNRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLR 1197
            D  P T  +A  S+E S+W +A+  E+      G W ++ R      +G R VF +K D+ GR  +YK RLVA+GF+Q   + + E+YSP +   SIR+VLS++VA  +   QLDVD A+L +D++E +Y+E+P   ++    +  L KA+YGL  A   R+V     G    R     ++  QCV+ +      V V + YVDD+++A     +  +    L S F +K+LG A + LG  I  +R AG+    Q +Y+  + +RF    +KT + P  +G + L K  SP T+AE ++MR  PYR ++GT  K Y I Y A             G   L A+ DAD+G+  D RRSVSG  V++    + + S+ Q   A +S+E+EY+AL+    E+ + R
Sbjct:  319 DDAPTTYTQAMKSNEASEWVKAMNAELHAHTDYGSWTLIRRNPDARPIGCRWVFAKKRDQHGRVARYKARLVAKGFKQKFGVDFFETYSPVANMNSIRVVLSVVVAKTYVTEQLDVDTAFLNSDLKERVYMEVPYGIKNAENMMCQLNKAIYGLKQAGRERMVQDDPRGVHEDR--VPQLRADQCVYVKGKKDKYVYVCL-YVDDMIIAVKNTTEINEVKTALKSAFKMKELGEAKFILGMKIDHNRTAGSLMIKQTRYVDDVVKRFNQEHSKTVVNPCETGMK-LSKLQSPATNAERDDMRSKPYRSLIGT--KEYGIIYDA-----------NNGKVKLEAFTDADWGSNLDDRRSVSGIMVLIGGAPVVFKSKYQCTVALSSAEAEYMALSLCTQEVLWAR 705          
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Match: A0A2N9EM55_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EM55_FAGSY)

HSP 1 Score: 200 bits (509), Expect = 3.430e-52
Identity = 141/422 (33.41%), Postives = 215/422 (50.95%), Query Frame = 1
Query:   10 EPRTMGEAQASSEWSQWKRAIAREMDGQISRGVWQVVERPKGKTVLGTRVVFKQKLDKDGRTEKYKCRLVAQGFRQVKCMHYEESYSPTSAQASIRMVLSMIVALGWEARQLDVDMAYLETDVEEEIYIELPEAY--RDFRKQVGLLKKAMYGLVHARLVW*KSSGSSSRRRVFRYVKPTQCVFRRILHGIVVVVIVVYVDDLLVASATKHDEEQAVRDLCSCFLIKDLG*ASYYLGCHITRDRNAGTQTFDQHQYIQTMAERFGVT--KTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI-----KRYNIYGALGTLGSPTEG--------------------------NRGGGTNLSAWVDADYGTCPDTRRSVSGGAVMMASGAISWFSRVQKVTAAASSESEYVALAE 1170
            +P    +A +  E   W  A+  EM+   S GVW +VE P G   +G + VFK K D  G  E+YK RLVA+GF Q + + Y E++SP S + S+R++L+++     E +Q+DV  A+L  D+EEE+Y++ PE +   D  + V  LKK++YGL  A   W     +      F      QC+++++  G  +  +V+YVDD+L+A+  K    +  + L   F +KD+G ASY +G  I RDR  G     Q  YI  + ERF +     S+ P V G R    +  P+ D E E+M+ IPY   VG+L+      R +I  A+G LG                                R     +  + D+D+  C D+R+S SG   +MASGA+SW S  Q +TA ++ E+E+V+  E
Sbjct:  685 DPEFFSQAMSCKESELWYNAMKEEMNSMKSNGVWDLVELPNGVKAIGCKWVFKTKKDSLGNIERYKARLVAKGFTQKEGIDYTETFSPVSKKDSLRVILALVAHFDLELQQMDVKTAFLNGDLEEEVYMKQPEGFLSSDGEQLVCKLKKSIYGLKQASRQWYLKFHNVISSFGFVENIMDQCIYQKV-SGSKICFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQGILGLSQETYINKVLERFRMNDCSPSVAPIVKGDR-FNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSDPGLDHWRAAKKVMRYLQGTKDYMLMYRRTDNLEVIGYSDSDFAGCIDSRKSTSGYIFLMASGAVSWRSAKQTLTATSTMEAEFVSCFE 1104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110065.823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A225WDK2_9STRA5.280e-5432.50Integrase, catalytic core protein n=1 Tax=Phytopht... [more]
A0A2K3LA50_TRIPR9.440e-5433.18Putative retrotransposon Ty1-copia subclass protei... [more]
A0A4Y9ZVS1_9AGAM3.700e-5332.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438HUL4_VITVI5.080e-5331.18Retrovirus-related Pol polyprotein from transposon... [more]
A0A2G8RWY5_9APHY6.290e-5333.63Transcription factor n=1 Tax=Ganoderma sinense ZZ0... [more]
A0A177TV96_9BASI1.030e-5230.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A445FBE9_GLYSO1.580e-5234.27Retrovirus-related Pol polyprotein from transposon... [more]
A0A445FAJ6_GLYSO1.760e-5234.27Retrovirus-related Pol polyprotein from transposon... [more]
A0A329SK86_9STRA3.280e-5234.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9EM55_FAGSY3.430e-5233.41Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110065contigH-elongata_contig110065:575..2109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue5.5e-09
Seed eggNOG ortholog67593.Physo136303
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1435
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110065.823.1prot_H-elongata_contig110065.823.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110065 1355..2108 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.6822171-UTR-H-elongata_contig110065:574..13541622929627.6822171-UTR-H-elongata_contig110065:574..1354Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110065 575..1354 +
1691679097.1099079-UTR-H-elongata_contig110065:574..13541691679097.1099079-UTR-H-elongata_contig110065:574..1354Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110065 575..1354 +
1622929627.7333813-UTR-H-elongata_contig110065:2108..21091622929627.7333813-UTR-H-elongata_contig110065:2108..2109Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110065 2109..2109 +
1691679097.1442797-UTR-H-elongata_contig110065:2108..21091691679097.1442797-UTR-H-elongata_contig110065:2108..2109Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig110065 2109..2109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.7005076-CDS-H-elongata_contig110065:1354..15031622929627.7005076-CDS-H-elongata_contig110065:1354..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110065 1355..1503 +
1691679097.1230378-CDS-H-elongata_contig110065:1354..15031691679097.1230378-CDS-H-elongata_contig110065:1354..1503Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110065 1355..1503 +
1622929627.7174814-CDS-H-elongata_contig110065:1603..21081622929627.7174814-CDS-H-elongata_contig110065:1603..2108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110065 1604..2108 +
1691679097.1335654-CDS-H-elongata_contig110065:1603..21081691679097.1335654-CDS-H-elongata_contig110065:1603..2108Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110065 1604..2108 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110065.823.1

>prot_H-elongata_contig110065.823.1 ID=prot_H-elongata_contig110065.823.1|Name=mRNA_H-elongata_contig110065.823.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
MAERFGVTKTSIIPSVSGGRALPKSDSPQTDAEVEEMRQIPYREIVGTLI
KRYNIYGALGTLGSPTEGNRGGGTNLSAWVDADYGTCPDTRRSVSGGAVM
MASGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKDFMIPQST
SPSRYTRTTKTQSRWRNTASAVDERGTWTSSITLSATRSRGGWSTWNTFG
RGTARRHSHEVLRRQDI*
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mRNA from alignment at H-elongata_contig110065:575..2109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110065.823.1 ID=mRNA_H-elongata_contig110065.823.1|Name=mRNA_H-elongata_contig110065.823.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1535bp|location=Sequence derived from alignment at H-elongata_contig110065:575..2109+ (Himanthalia elongata Himel1 dioecious)
CTAGACCCAGAGCCGAGAACCATGGGCGAGGCGCAAGCGTCGTCGGAGTG GTCGCAATGGAAAAGGGCGATCGCGCGAGAGATGGATGGGCAAATTTCTC GAGGCGTGTGGCAGGTGGTGGAGCGCCCAAAAGGGAAGACGGTGCTTGGC ACGAGAGTAGTTTTCAAGCAAAAACTCGACAAGGATGGAAGGACCGAGAA GTATAAATGTCGTCTCGTGGCGCAGGGTTTCAGGCAGGTCAAATGCATGC ACTACGAGGAATCCTACTCTCCGACTTCTGCGCAGGCCAGCATTAGGATG GTACTCAGCATGATCGTGGCTCTCGGCTGGGAGGCGCGGCAGCTGGATGT CGACATGGCCTACCTGGAGACCGATGTGGAGGAGGAGATCTACATTGAGC TCCCGGAGGCATACCGTGACTTCAGGAAGCAAGTCGGCCTACTAAAGAAG GCAATGTACGGACTCGTCCACGCCAGGCTGGTGTGGTAAAAAAGTTCGGG ATCGAGCTCGAGGAGAAGGGTTTTCAGATATGTCAAGCCGACCCAATGCG TGTTCCGGCGGATTCTCCACGGGATAGTGGTAGTCGTCATTGTGGTCTAT GTCGATGACCTGCTGGTTGCTAGTGCGACGAAACATGACGAGGAGCAAGC GGTGAGGGACCTGTGCTCCTGTTTCCTCATCAAGGATCTGGGGTAGGCTT CGTATTACCTGGGATGCCACATCACGCGGGACCGGAACGCCGGGACACAG ACCTTCGACCAGCATCAGTACATACAGACTATGGCGGAACGTTTTGGCGT GACGAAGACCAGCATCATCCCGTCCGTGTCAGGAGGAAGAGCCCTTCCGA AATCAGACAGCCCGCAAACGGACGCAGAGGTTGAAGAAATGCGCCAGATT CCCTACCGAGAAATCGTTGGGACCCTAATGTAGCCAGCGACGATGACCAG GACCGACATTTTATTTGCTGCGCACCAACTGGCGAAATTCAACGACAACC CCGGACCGATACACTGGAGGGTAGCCCAGAAAGCGCTACAATATTTATGG CGCACTCGGGACCTTGGGATCACCTACGGAGGGGAACCGGGGGGGGGGGA CCAATTTATCAGCGTGGGTCGACGCAGACTATGGCACCTGCCCGGACACG CGTCGCTCAGTGTCGGGAGGGGCGGTGATGATGGCTAGCGGGGCCATTAG TTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGTCGTCCGAATCGG AATACGTCGCTCTGGCTGAGATGGTAAATGAGTTGCGTTTTCTACGACAG GTCAAAGACTTCATGATCCCCCAATCGACGTCGCCATCAAGATACACGAG GACAACGAAGACGCAATCAAGATGGCGAAATACCGCCTCAGCAGTCGACG AACGAGGCACGTGGACATCAAGCATCACATTGTCCGCAACGCGATCGAGG GGGGGGTGGTCCACGTGGAATACGTTCGGTCGGGGAACAGCACGCCGGCA TTCTCACGAAGTCCTTAGACGTCAAGACATTTGAG
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Coding sequence (CDS) from alignment at H-elongata_contig110065:575..2109+

>mRNA_H-elongata_contig110065.823.1 ID=mRNA_H-elongata_contig110065.823.1|Name=mRNA_H-elongata_contig110065.823.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig110065:575..2109+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGAACGTTTTGGCGTGACGAAGACCAGCATCATCCCGTCCGTGTC
AGGAGGAAGAGCCCTTCCGAAATCAGACAGCCCGCAAACGGACGCAGAGG
TTGAAGAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGGACCCTAATA
TGGCGGAACGTTTTGGCGTGACGAAGACCAGCATCATCCCGTCCGTGTCA
GGAGGAAGAGCCCTTCCGAAATCAGACAGCCCGCAAACGGACGCAGAGGT
TGAAGAAATGCGCCAGATTCCCTACCGAGAAATCGTTGGGACCCTAATAA
AGCGCTACAATATTTATGGCGCACTCGGGACCTTGGGATCACCTACGGAG
GGGAACCGGGGGGGGGGGACCAATTTATCAGCGTGGGTCGACGCAGACTA
TGGCACCTGCCCGGACACGCGTCGCTCAGTGTCGGGAGGGGCGGTGATGA
TGGCTAGCGGGGCCATTAGTTGGTTCTCACGAGTGCAAAAGGTAACGGCG
GCGGCGTCGTCCGAATCGGAATACGTCGCTCTGGCTGAGATGGTAAATGA
GTTGCGTTTTCTACGACAGGTCAAAGACTTCATGATCCCCCAATCGACGT
CGCCATCAAGATACACGAGGACAACGAAGACGCAATCAAGATGGCGAAAT
ACCGCCTCAGCAGTCGACGAACGAGGCACGTGGACATCAAGCATCACATT
GTCCGCAACGCGATCGAGGGGGGGGTGGTCCACGTGGAATACGTTCGGTC
GGGGAACAGCACGCCGGCATTCTCACGAAGTCCTTAGACGTCAAGACATT
TGAAAAGCGCTACAATATTTATGGCGCACTCGGGACCTTGGGATCACCTA
CGGAGGGGAACCGGGGGGGGGGGACCAATTTATCAGCGTGGGTCGACGCA
GACTATGGCACCTGCCCGGACACGCGTCGCTCAGTGTCGGGAGGGGCGGT
GATGATGGCTAGCGGGGCCATTAGTTGGTTCTCACGAGTGCAAAAGGTAA
CGGCGGCGGCGTCGTCCGAATCGGAATACGTCGCTCTGGCTGAGATGGTA
AATGAGTTGCGTTTTCTACGACAGGTCAAAGACTTCATGATCCCCCAATC
GACGTCGCCATCAAGATACACGAGGACAACGAAGACGCAATCAAGATGGC
GAAATACCGCCTCAGCAGTCGACGAACGAGGCACGTGGACATCAAGCATC
ACATTGTCCGCAACGCGATCGAGGGGGGGGTGGTCCACGTGGAATACGTT
CGGTCGGGGAACAGCACGCCGGCATTCTCACGAAGTCCTTAGACGTCAAG
ACATTTGA
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