mRNA_H-elongata_contig110064.822.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110064.822.1
Unique NamemRNA_H-elongata_contig110064.822.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110064.822.1 vs. uniprot
Match: D7G3I5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I5_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 5.410e-28
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:    1 PGGSGKRVVDREAYNRMFPGGAMLNMKGFTLKEKSAVSAAFELCAAMEPKSRPKFEHKD-GIKSNSSPFTLHVSVNGVNYTPAT 249
            P GSGK V+D  A+ RM+PGGA+LNMK F LK+KSAVSAAFE+CAAMEPKSRP FE+K+     N SPFTL+VSVNGV Y+PAT
Sbjct:  832 PPGSGKMVLDELAHARMYPGGAVLNMKSFKLKQKSAVSAAFEMCAAMEPKSRPSFENKNKDAAKNISPFTLNVSVNGVAYSPAT 915
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110064.822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3I5_ECTSI5.410e-2870.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110064contigH-elongata_contig110064:780..2181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size249
Cds size249
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110064.822.1prot_H-elongata_contig110064.822.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110064 780..2181 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.6055973-CDS-H-elongata_contig110064:779..8301622929627.6055973-CDS-H-elongata_contig110064:779..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110064 780..830 -
1691679097.0715413-CDS-H-elongata_contig110064:779..8301691679097.0715413-CDS-H-elongata_contig110064:779..830Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110064 780..830 -
1622929627.6182437-CDS-H-elongata_contig110064:1555..16631622929627.6182437-CDS-H-elongata_contig110064:1555..1663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110064 1556..1663 -
1691679097.0796962-CDS-H-elongata_contig110064:1555..16631691679097.0796962-CDS-H-elongata_contig110064:1555..1663Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110064 1556..1663 -
1622929627.629412-CDS-H-elongata_contig110064:2091..21811622929627.629412-CDS-H-elongata_contig110064:2091..2181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110064 2092..2181 -
1691679097.0921118-CDS-H-elongata_contig110064:2091..21811691679097.0921118-CDS-H-elongata_contig110064:2091..2181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110064 2092..2181 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110064.822.1

>prot_H-elongata_contig110064.822.1 ID=prot_H-elongata_contig110064.822.1|Name=mRNA_H-elongata_contig110064.822.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
PGGSGKRVVDREAYNRMFPGGAMLNMKGFTLKEKSAVSAAFELCAAMEPK
SRPKFEHKDGIKSNSSPFTLHVSVNGVNYTPAT
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mRNA from alignment at H-elongata_contig110064:780..2181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110064.822.1 ID=mRNA_H-elongata_contig110064.822.1|Name=mRNA_H-elongata_contig110064.822.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1402bp|location=Sequence derived from alignment at H-elongata_contig110064:780..2181- (Himanthalia elongata Himel1 dioecious)
CCTGGCGGGAGCGGGAAGAGGGTGGTGGACCGCGAGGCGTATAATCGCAT
GTTCCCGGGCGGCGCGATGTTGAACATGAAGGGGTTCACTGTGAGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTTTACTAAATTGTACATAACCGCGCAATCCGGCTCTGTCATGCTATC
TCTTCTAGGCTACTCTTGCATTGATCTTCCCAAAAGGGGATTCAATCATG
TGTGTGTGTGTGTGTCTGTGTGTTTGAGCGACGGCAGATCCTGAGTAAAG
CTTAATTGTCTCCCCAACGCGCTTGCTTTGCTTGTTGCTTGTCATGTTGT
CTTGTCCAAGCCGTTTCCCCCAAAAGGAATAGACAAGACTCGCGATTGGT
CGATCGATCGATCGGCTTGCCCCTGACATTCCTCCCCGCACCCCCCCCTT
CCTTCCCGGTGTCGTTCCGTCGTCGGTCGTCTCGGCGGCGATATCGGCAC
CGCCACGGGCACTGGCAGCTGAAGGAGAAATCGGCCGTCTCGGCGGCGTT
CGAGCTGTGTGCAGCCATGGAGCCCAAGTCGCGCCCAAAGTTTGAGCACA
AGGATGGCATCAAGAGCAACTCTTCGGTCAGCTCCCACCACAACCCTCTA
ACTCCTTGCTCCTCCTTACAATACTAATACTAGTGTCAGTAGTCTAGTCA
TCATTGAGTTGCTGCTGCTAAACTTCGTTTTTTTTCTCTCGCTATATGTA
TATACTATATATATATATACTGTATATATACTATATATATACGATGTAGC
ACGGGTACCGCCGTACGCGATTTTGATACGATGCGCGTATTTCGAGAGCG
AGACCAATCGATAGCTTCTCGGTTGTTTTCATTTGAACTTTTGTGCTTTG
TGTGTATGTGTATATATTTATTAAATTGCACATAACCGCGCAATCCGGCC
CTATACTGTCATGCTAGCTCTTCTAGGCTACACTCGCATTGATCCGTGTG
TGTGTGTGTGTGTGTGTGTGTTTTATTTTTATTTTATTTTGCTCTAAAAT
CGGCTTTGGTGATAATACGGGAACTCCGTATTGTCAGGGTTTGGGGGCTG
GGTCCATCCGCGGTCAGCATACAAATGCCACGTCGTGTTGTGTTGTTTGA
CGTTTTGTTTTTATTTTTTTTAAACATGAACTTATTCCAACCCTCCGAAC
GTCCACACCTTCTCAGTACCGTGAGAGGTAAATAGCCATTTGATCCCAAA
TGATCGCGAGGCGTTGAAAACGTCCATATTTCACGGCTTGCCCCCCCCTC
CCCCTCCGTTCTTCTTGTCATCCCATGCATCGCGGAAACTCTTCGGTTCA
GCCCTTCACTCTCCACGTATCGGTGAACGGAGTCAACTATACGCCAGCGA
CG
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Coding sequence (CDS) from alignment at H-elongata_contig110064:780..2181-

>mRNA_H-elongata_contig110064.822.1 ID=mRNA_H-elongata_contig110064.822.1|Name=mRNA_H-elongata_contig110064.822.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig110064:780..2181- (Himanthalia elongata Himel1 dioecious)
CCTGGCGGGAGCGGGAAGAGGGTGGTGGACCGCGAGGCGTATAATCGCAT
GTTCCCGGGCGGCGCGATGTTGAACATGAAGGGGTTCACTCCTGGCGGGA
GCGGGAAGAGGGTGGTGGACCGCGAGGCGTATAATCGCATGTTCCCGGGC
GGCGCGATGTTGAACATGAAGGGGTTCACTCTGAAGGAGAAATCGGCCGT
CTCGGCGGCGTTCGAGCTGTGTGCAGCCATGGAGCCCAAGTCGCGCCCAA
AGTTTGAGCACAAGGATGGCATCAAGAGCAACTCTTCGCTGAAGGAGAAA
TCGGCCGTCTCGGCGGCGTTCGAGCTGTGTGCAGCCATGGAGCCCAAGTC
GCGCCCAAAGTTTGAGCACAAGGATGGCATCAAGAGCAACTCTTCGCCCT
TCACTCTCCACGTATCGGTGAACGGAGTCAACTATACGCCAGCGACGCCC
TTCACTCTCCACGTATCGGTGAACGGAGTCAACTATACGCCAGCGACG
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