mRNA_H-elongata_contig110021.818.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig110021.818.1
Unique NamemRNA_H-elongata_contig110021.818.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig110021.818.1 vs. uniprot
Match: D7FWM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWM9_ECTSI)

HSP 1 Score: 283 bits (724), Expect = 2.250e-86
Identity = 178/334 (53.29%), Postives = 217/334 (64.97%), Query Frame = 1 
Query:    1 MAKSRKKQCRKPKQPTKGGGLVVVSSRDLHAMLSDPSD-QAKWGVNKRSKLKKRKQGGLIRDLSPLGVGPDEDFDDVPSVSPFTASDASVLNECDIQHLSFTSTHPREQRLYYLLATQP---------QPNFKGSGGSKPRETR--EGGCHAVVFVEETALAQRLLGELKALSLIAFAVHERTPKAQRQDHVKRFRSSPSAKKSSVLILTNAAAAR-PLLIGSIPISEAKLVRVVHFDAPEGKKNAAARRRIAAGVFGARGAGTAEEVHLEGGEDADGLRSFTFESGAMNGISSRLAVAKKLARLVASATVADGQEKGMRRAAAAAGLEWDDAS 963
            MAKS KKQCR PK   KGGGLVVVS R+LH+  +     QAK G        KR  G  + DLS  G G D D  D P  +   AS   V      +++  +  H RE     LL T+          Q +  G GG  P      EGGCHA+VFVE TA+AQ L+GELKALSL+AFAVH+RTPKAQ Q+HVKRF ++ S+++SSVL+LTN A +R P  IGS+     KL RVVHFDAPEGKK+AAAR R+A G F  RGAG AEEV+L GG +A GL  F+F+SGAM GI SRLAVAKKL+R +A  +  +G+E+GM+RAAAAAGLEWD+ S
Sbjct:    1 MAKSSKKQCRTPKPSRKGGGLVVVSQRNLHSNSTPQQHPQAKKGXXXXXXXXKRGLG--LADLSAPGDGDDSDDFDAPPSASAVASTGGVA-----EYIFSSKHHSREXXXXXLLTTRTSDMCATRGQQQHQPGEGGGIPDAPTAVEGGCHALVFVETTAVAQELVGELKALSLVAFAVHDRTPKAQTQEHVKRFLAATSSERSSVLVLTNLAISRTPPSIGSVKPGHGKLQRVVHFDAPEGKKDAAARARVAGGFFRGRGAGAAEEVYLRGGAEAVGLAPFSFDSGAMGGIRSRLAVAKKLSRAIAL-SAGEGEERGMQRAAAAAGLEWDEQS 326
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110021.818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWM9_ECTSI2.250e-8653.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110021contigH-elongata_contig110021:436..2025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.4
Seed ortholog evalue3.3e-74
Seed eggNOG ortholog2880.D7FWM9
EggNOG OGs28Q49@1,2QWT3@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size975
Cds size975
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110021.818.1prot_H-elongata_contig110021.818.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig110021 436..2025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929627.0551367-CDS-H-elongata_contig110021:435..9601622929627.0551367-CDS-H-elongata_contig110021:435..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110021 436..960 +
1691679096.8968496-CDS-H-elongata_contig110021:435..9601691679096.8968496-CDS-H-elongata_contig110021:435..960Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110021 436..960 +
1622929627.0730023-CDS-H-elongata_contig110021:1376..16961622929627.0730023-CDS-H-elongata_contig110021:1376..1696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110021 1377..1696 +
1691679096.9077024-CDS-H-elongata_contig110021:1376..16961691679096.9077024-CDS-H-elongata_contig110021:1376..1696Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110021 1377..1696 +
1622929627.089143-CDS-H-elongata_contig110021:1895..20251622929627.089143-CDS-H-elongata_contig110021:1895..2025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110021 1896..2025 +
1691679096.9184318-CDS-H-elongata_contig110021:1895..20251691679096.9184318-CDS-H-elongata_contig110021:1895..2025Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig110021 1896..2025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig110021.818.1

>prot_H-elongata_contig110021.818.1 ID=prot_H-elongata_contig110021.818.1|Name=mRNA_H-elongata_contig110021.818.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=325bp
MAKSRKKQCRKPKQPTKGGGLVVVSSRDLHAMLSDPSDQAKWGVNKRSKL
KKRKQGGLIRDLSPLGVGPDEDFDDVPSVSPFTASDASVLNECDIQHLSF
TSTHPREQRLYYLLATQPQPNFKGSGGSKPRETREGGCHAVVFVEETALA
QRLLGELKALSLIAFAVHERTPKAQRQDHVKRFRSSPSAKKSSVLILTNA
AAARPLLIGSIPISEAKLVRVVHFDAPEGKKNAAARRRIAAGVFGARGAG
TAEEVHLEGGEDADGLRSFTFESGAMNGISSRLAVAKKLARLVASATVAD
GQEKGMRRAAAAAGLEWDDASGHR*
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mRNA from alignment at H-elongata_contig110021:436..2025+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig110021.818.1 ID=mRNA_H-elongata_contig110021.818.1|Name=mRNA_H-elongata_contig110021.818.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1590bp|location=Sequence derived from alignment at H-elongata_contig110021:436..2025+ (Himanthalia elongata Himel1 dioecious)
ATGGCTAAGTCAAGAAAAAAGCAGTGTCGCAAACCAAAGCAGCCTACAAA
AGGCGGTGGGTTGGTGGTCGTCTCTTCGAGAGACCTCCACGCTATGCTCT
CGGATCCTTCCGATCAAGCGAAGTGGGGTGTGAACAAGAGGAGCAAGCTC
AAGAAACGGAAGCAGGGAGGGCTAATAAGAGACCTGTCGCCCCTTGGGGT
TGGTCCTGACGAGGACTTCGACGATGTCCCTAGTGTTTCGCCCTTCACCG
CATCTGACGCTTCGGTGCTCAATGAATGCGACATTCAACATCTCTCATTT
ACTTCCACACACCCTCGGGAACAGCGGTTGTACTATCTGCTTGCCACACA
GCCCCAGCCAAATTTTAAAGGTAGTGGTGGAAGCAAGCCCAGGGAAACCA
GGGAGGGCGGGTGCCACGCGGTGGTCTTTGTGGAGGAGACCGCACTTGCA
CAGCGACTTCTTGGGGAACTAAAGGCGCTAAGTCTCATCGCGTTTGCGGT
GCACGAGCGGACACCCAAGGCCCAGGTGAATTTAACGAAGACAAAACCTC
TCGCTATAGCCTTGGTTTACACATAGATAGCGATTAAAATATGCACCTTA
GCCCCTCGCGACAGCGGACACTCTTTCGGTATGGATAACACTGGTGCAAC
GGCTTCCTGCGACTTACGCTCTGGCCATCTGTAGTTGCTATCTAGATGCG
TTTCAGCTTTGAAGCCGTTTTTATTATGAAAACCCTCGTGGCTAGCGAAA
CCAGTGACTAAAGCTCCAGTAATCTGGTGATGATACCGACTCGCCCTTTT
CCTCCCTGTATCTAAACACCAAGGCTTGTAGGAATATCGTCAACCACAAG
AGTAATGTAGTGTAAAAGTAAACCCTCTTGGAGTCGTGGCTTGACAATAG
GTCCTCTATCCTTTTACGCACGTCACATGAATACCCCTCAGCGCCAGGAT
CACGTCAAACGCTTTCGATCATCACCCTCTGCGAAGAAGAGCTCTGTGCT
GATATTGACCAACGCGGCGGCAGCGCGTCCGCTGTTAATCGGATCGATTC
CGATTTCGGAAGCAAAACTTGTGAGGGTCGTGCACTTCGATGCGCCAGAG
GGAAAGAAGAACGCGGCTGCCAGACGACGTATCGCGGCAGGCGTGTTTGG
TGCGCGGGGTGCCGGGACGGCGGAGGAGGTGCACCTGGAAGGGGGCGAGG
ATGCAGATGGGCTACGATCATTTACGTTCGAAAGTGGAGCCATGAACGGA
ATCTCTTCAAGGTAATGTATCTGACAGTCTGCGCGCTTGTACTGCCGGTT
AGACCTTTATACACCGTTTATAATTAAGGGCTTGAGTCGCCGAACTATGA
GGCGCCACAGCAGTTTTGTCGTGTTTAGATCAAAGGAACGCAGCATATAA
ATGTTTTTCATATCGTCGGCCTCTCCCCTCCCTCCCCTACACGACTATAT
GACATTCAAGGCTTGCTGTAGCCAAGAAGCTTGCGCGGCTGGTGGCATCC
GCCACCGTCGCAGACGGTCAGGAGAAAGGGATGCGACGTGCTGCTGCGGC
TGCAGGATTAGAGTGGGACGATGCTAGCGGGCACCGGTAA
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Coding sequence (CDS) from alignment at H-elongata_contig110021:436..2025+

>mRNA_H-elongata_contig110021.818.1 ID=mRNA_H-elongata_contig110021.818.1|Name=mRNA_H-elongata_contig110021.818.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1950bp|location=Sequence derived from alignment at H-elongata_contig110021:436..2025+ (Himanthalia elongata Himel1 dioecious)
ATGGCTAAGTCAAGAAAAAAGCAGTGTCGCAAACCAAAGCAGCCTACAAA
AGGCGGTGGGTTGGTGGTCGTCTCTTCGAGAGACCTCCACGCTATGCTCT
CGGATCCTTCCGATCAAGCGAAGTGGGGTGTGAACAAGAGGAGCAAGCTC
AAGAAACGGAAGCAGGGAGGGCTAATAAGAGACCTGTCGCCCCTTGGGGT
TGGTCCTGACGAGGACTTCGACGATGTCCCTAGTGTTTCGCCCTTCACCG
CATCTGACGCTTCGGTGCTCAATGAATGCGACATTCAACATCTCTCATTT
ACTTCCACACACCCTCGGGAACAGCGGTTGTACTATCTGCTTGCCACACA
GCCCCAGCCAAATTTTAAAGGTAGTGGTGGAAGCAAGCCCAGGGAAACCA
GGGAGGGCGGGTGCCACGCGGTGGTCTTTGTGGAGGAGACCGCACTTGCA
CAGCGACTTCTTGGGGAACTAAAGGCGCTAAGTCTCATCGCGTTTGCGGT
GCACGAGCGGACACCCAAGGCCCAGATGGCTAAGTCAAGAAAAAAGCAGT
GTCGCAAACCAAAGCAGCCTACAAAAGGCGGTGGGTTGGTGGTCGTCTCT
TCGAGAGACCTCCACGCTATGCTCTCGGATCCTTCCGATCAAGCGAAGTG
GGGTGTGAACAAGAGGAGCAAGCTCAAGAAACGGAAGCAGGGAGGGCTAA
TAAGAGACCTGTCGCCCCTTGGGGTTGGTCCTGACGAGGACTTCGACGAT
GTCCCTAGTGTTTCGCCCTTCACCGCATCTGACGCTTCGGTGCTCAATGA
ATGCGACATTCAACATCTCTCATTTACTTCCACACACCCTCGGGAACAGC
GGTTGTACTATCTGCTTGCCACACAGCCCCAGCCAAATTTTAAAGGTAGT
GGTGGAAGCAAGCCCAGGGAAACCAGGGAGGGCGGGTGCCACGCGGTGGT
CTTTGTGGAGGAGACCGCACTTGCACAGCGACTTCTTGGGGAACTAAAGG
CGCTAAGTCTCATCGCGTTTGCGGTGCACGAGCGGACACCCAAGGCCCAG
CGCCAGGATCACGTCAAACGCTTTCGATCATCACCCTCTGCGAAGAAGAG
CTCTGTGCTGATATTGACCAACGCGGCGGCAGCGCGTCCGCTGTTAATCG
GATCGATTCCGATTTCGGAAGCAAAACTTGTGAGGGTCGTGCACTTCGAT
GCGCCAGAGGGAAAGAAGAACGCGGCTGCCAGACGACGTATCGCGGCAGG
CGTGTTTGGTGCGCGGGGTGCCGGGACGGCGGAGGAGGTGCACCTGGAAG
GGGGCGAGGATGCAGATGGGCTACGATCATTTACGTTCGAAAGTGGAGCC
ATGAACGGAATCTCTTCAAGCGCCAGGATCACGTCAAACGCTTTCGATCA
TCACCCTCTGCGAAGAAGAGCTCTGTGCTGATATTGACCAACGCGGCGGC
AGCGCGTCCGCTGTTAATCGGATCGATTCCGATTTCGGAAGCAAAACTTG
TGAGGGTCGTGCACTTCGATGCGCCAGAGGGAAAGAAGAACGCGGCTGCC
AGACGACGTATCGCGGCAGGCGTGTTTGGTGCGCGGGGTGCCGGGACGGC
GGAGGAGGTGCACCTGGAAGGGGGCGAGGATGCAGATGGGCTACGATCAT
TTACGTTCGAAAGTGGAGCCATGAACGGAATCTCTTCAAGGCTTGCTGTA
GCCAAGAAGCTTGCGCGGCTGGTGGCATCCGCCACCGTCGCAGACGGTCA
GGAGAAAGGGATGCGACGTGCTGCTGCGGCTGCAGGATTAGAGTGGGACG
ATGCTAGCGGGCACCGGTAAGCTTGCTGTAGCCAAGAAGCTTGCGCGGCT
GGTGGCATCCGCCACCGTCGCAGACGGTCAGGAGAAAGGGATGCGACGTG
CTGCTGCGGCTGCAGGATTAGAGTGGGACGATGCTAGCGGGCACCGGTAA
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