prot_H-elongata_contig110003.815.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig110003.815.1
Unique Nameprot_H-elongata_contig110003.815.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length59
Homology
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: K8EPY9_9CHLO (Nucleosome binding protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EPY9_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 1.410e-8
Identity = 28/57 (49.12%), Postives = 38/57 (66.67%), Query Frame = 0
Query:    2 LLCYSCFTFPIKKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 58
            L  Y  F    + + +KA NPD+K+T++G+ LGE WR M D++K PY KKAD DK R
Sbjct:   28 LSAYFFFMNDQRAKVVKA-NPDMKVTEVGKKLGELWRAMSDSEKVPYNKKADADKVR 83          
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A1V8UUA1_9PEZI (Non-histone chromosomal protein 6 n=2 Tax=Rachicladosporium TaxID=470018 RepID=A0A1V8UUA1_9PEZI)

HSP 1 Score: 55.8 bits (133), Expect = 1.430e-8
Identity = 22/46 (47.83%), Postives = 36/46 (78.26%), Query Frame = 0
Query:   13 KKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 58
            ++ +++  NP +K  D+G++LGE+W+G+ DAQKKPY  KA+ DK+R
Sbjct:   43 QRDKVREDNPGIKFGDVGKILGEKWKGLSDAQKKPYNAKAETDKKR 88          
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: D7FLE3_ECTSI (ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE3_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.530e-8
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:   10 FPIKKRQL-KASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 58
            F  K+R + K  NPD+K+T++ ++LG RWR MDD  K P++KKAD DK R
Sbjct:    3 FSQKERAVVKQENPDMKVTEISKVLGARWREMDDNDKAPFQKKADKDKAR 52          
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A6H5JHH0_9PHAE (HMG box domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHH0_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 7.650e-8
Identity = 26/50 (52.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:   10 FPIKKRQL-KASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 58
            F  K+R + K  NPD+K+T++ ++LG RWR MDD  K P++KKAD DK R
Sbjct:   43 FSQKERAVVKEENPDMKVTEISKLLGARWREMDDNDKAPFQKKADKDKAR 92          
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A8H7BXE0_9FUNG (Non-histone chromosomal protein 6 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BXE0_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 7.940e-8
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 0
Query:   13 KKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 58
            K++++K  NP+     +G++LGE+W+GM D QKKPY +KA+ DK+R
Sbjct:   44 KRQEVKDENPEATFGQIGKILGEKWKGMTDEQKKPYVEKAEADKKR 89          
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: D7FLF8_ECTSI (FACT complex subunit SSRP1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF8_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 1.380e-7
Identity = 23/45 (51.11%), Postives = 35/45 (77.78%), Query Frame = 0
Query:   14 KRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 58
            + Q+K  NP+LK+T++ ++LGE+W  +D+ QKKPY+ KAD DK R
Sbjct:  568 RAQVKTDNPELKVTEISKVLGEKWGKLDETQKKPYQDKADEDKAR 612          
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A2N5VL41_9BASI (HMG box domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5VL41_9BASI)

HSP 1 Score: 53.5 bits (127), Expect = 2.820e-7
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 0
Query:    1 PLLCYSCFTFPIKKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 58
            PL  Y  F+   ++R +K  NPD    D+GR+LG++W+G+ +  KKPY+  A VDK+R
Sbjct:   92 PLSAYMYFSQDWRER-IKIENPDCSFGDIGRLLGQKWKGLSEEDKKPYEDMASVDKKR 148          
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A167JA28_PHYB8 (HMG box domain-containing protein n=1 Tax=Phycomyces blakesleeanus (strain ATCC 8743b / DSM 1359 / FGSC 10004 / NBRC 33097 / NRRL 1555) TaxID=763407 RepID=A0A167JA28_PHYB8)

HSP 1 Score: 52.4 bits (124), Expect = 2.920e-7
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 0
Query:   13 KKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 58
            ++  +K +NPD     +G++LGERW+ M DA KKPY +KA++DK+R
Sbjct:   44 QRHVVKENNPDASFGQIGKILGERWKKMTDADKKPYNQKAELDKKR 89          
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A0H5R7U8_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7U8_9EUKA)

HSP 1 Score: 53.9 bits (128), Expect = 6.560e-7
Identity = 24/58 (41.38%), Postives = 38/58 (65.52%), Query Frame = 0
Query:    1 PLLCYSCFTFPIKKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 58
            PL  Y  F+   ++ Q++  NPD    D+GR+LG+ W+ ++D++K+PY  KA  DKER
Sbjct:  150 PLSAYMYFSQD-RRPQIRTENPDTAFGDLGRLLGQLWKSLEDSEKQPYNDKAQADKER 206          
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Match: A0A8H7UZ93_9FUNG (HMG box domain-containing protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7UZ93_9FUNG)

HSP 1 Score: 51.2 bits (121), Expect = 7.120e-7
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = 0
Query:   14 KRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKKKADVDKER 58
            + Q+K  NPD     +G++LGE+W+GM D  KKP+ +KA+ DK+R
Sbjct:   45 RAQVKEDNPDATFGQIGKLLGEKWKGMTDEDKKPFHEKAEKDKQR 89          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig110003.815.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K8EPY9_9CHLO1.410e-849.12Nucleosome binding protein n=1 Tax=Bathycoccus pra... [more]
A0A1V8UUA1_9PEZI1.430e-847.83Non-histone chromosomal protein 6 n=2 Tax=Rachicla... [more]
D7FLE3_ECTSI4.530e-852.00ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) t... [more]
A0A6H5JHH0_9PHAE7.650e-852.00HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
A0A8H7BXE0_9FUNG7.940e-847.83Non-histone chromosomal protein 6 n=1 Tax=Apophyso... [more]
D7FLF8_ECTSI1.380e-751.11FACT complex subunit SSRP1 n=1 Tax=Ectocarpus sili... [more]
A0A2N5VL41_9BASI2.820e-743.10HMG box domain-containing protein n=2 Tax=Puccinia... [more]
A0A167JA28_PHYB82.920e-747.83HMG box domain-containing protein n=1 Tax=Phycomyc... [more]
A0A0H5R7U8_9EUKA6.560e-741.38Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A8H7UZ93_9FUNG7.120e-746.67HMG box domain-containing protein n=1 Tax=Mucor sa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00886HIGHMOBLTY12coord: 32..51
score: 39.81
coord: 51..58
score: 18.69
coord: 14..32
score: 27.1
NoneNo IPR availablePANTHERPTHR13711SWI/SNF-RELATED CHROMATIN BINDING PROTEINcoord: 5..58
IPR009071High mobility group box domainPFAMPF00505HMG_boxcoord: 12..58
e-value: 1.0E-12
score: 48.2
IPR009071High mobility group box domainPROSITEPS50118HMG_BOX_2coord: 1..58
score: 13.495
IPR036910High mobility group box domain superfamilyGENE3D1.10.30.10coord: 1..58
e-value: 8.3E-14
score: 53.6
IPR036910High mobility group box domain superfamilySUPERFAMILY47095HMG-boxcoord: 14..58

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig110003contigH-elongata_contig110003:527..703 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig110003.815.1mRNA_H-elongata_contig110003.815.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig110003 527..703 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig110003.815.1 ID=prot_H-elongata_contig110003.815.1|Name=mRNA_H-elongata_contig110003.815.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
PLLCYSCFTFPIKKRQLKASNPDLKITDMGRMLGERWRGMDDAQKKPYKK
KADVDKER*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009071HMG_box_dom
IPR036910HMG_box_dom_sf