mRNA_H-elongata_contig109957.806.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109957.806.1
Unique NamemRNA_H-elongata_contig109957.806.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A6H5JEE3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JEE3_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 3.310e-69
Identity = 108/181 (59.67%), Postives = 133/181 (73.48%), Query Frame = 1
Query:    1 GKTVVPDEFCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVTMFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTD-ANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
            G+ V PDE C+PL +TT+DGE  DLNPCGLIANSMFNDII L++E VTM E+DISW+SDR  RFKQPPGF             N+SC DC        + Y  C ++TD +  T +K+WYPD++ TQ+LYETYP +VSPI+GVLNEHFIVWMRTAGLP FRK+YGRI++++  P  LTFNI
Sbjct:  147 GEAVEPDENCEPLERTTVDGEILDLNPCGLIANSMFNDIIELTTEGVTMSEKDISWKSDRETRFKQPPGFTFAECS------ANTSCSDCLG-----GSKYSSCGDHTDESTGTEYKFWYPDDETTQFLYETYPGVVSPIEGVLNEHFIVWMRTAGLPRFRKLYGRIDEQIEAPQVLTFNI 316          
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A6S9FRN7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FRN7_HETAK)

HSP 1 Score: 181 bits (460), Expect = 6.750e-53
Identity = 93/185 (50.27%), Postives = 125/185 (67.57%), Query Frame = 1
Query:    1 GKTVVPD-EFCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSEN---VTMFEEDISWESDRNKRFKQPPGFASVVVGK-GNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
            G T+  D ++C PLT     G + DLNPCGL+ANS+FND+I L +     V + E  I+W+SDR  +F QP GFA V +G    C  L  +CE  F     D++ YD CE YTDA NT + Y+YP+ND+ QYLYET+P++++PI+GV NEHFIVWMRTA LP FRK+YG I+ +L+  D +TF +
Sbjct:  126 GSTLHADTDYCSPLTSN---GSQ-DLNPCGLVANSLFNDVIALEASTNAAVALDETGITWDSDRATKFAQPDGFAYVTLGDDAGCTELPCTCETAF-----DSSDYDDCEFYTDAENTTYAYYYPENDEIQYLYETFPEVINPIEGVTNEHFIVWMRTAALPKFRKLYGIIDTDLTEGDEITFKV 301          
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: D8LLD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD4_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 3.570e-47
Identity = 86/181 (47.51%), Postives = 109/181 (60.22%), Query Frame = 1
Query:   25 FCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSS-----ENVT----MFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
             C PL       +  DLNPCGL+ANSMFND+I + S     E+++    M E  ISW +DR+  F QP GF             + SCEDC        A Y  C ++TD   T++KYWYPD   TQYLYETYP ++SP+DGV +EHF+VWMRTA L TFR +YGRIE +L  P  +TFN+
Sbjct:  112 ICSPLESI----DTLDLNPCGLVANSMFNDVIVVDSAPEPYESLSPYEYMDEGGISWVTDRDGDFSQPDGFVRAECAP------SVSCEDCLGS-----AAYSDCGSFTDRTGTSYKYWYPDEASTQYLYETYPNVISPVDGVTDEHFVVWMRTAALSTFRNLYGRIEHDLVAPAEITFNV 277          
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A836CGC5_9STRA (CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC5_9STRA)

HSP 1 Score: 159 bits (401), Expect = 3.830e-44
Identity = 81/171 (47.37%), Postives = 108/171 (63.16%), Query Frame = 1
Query:   28 CDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVTMFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
            C PL +      +  L+PCGLIAN++FNDIIT++S+ V M E  I+W +D +K F+QP GF +              C  C       +  YDGC   TDA+ T++ YWYPD DK QYLYET+P ++SP++GV NEHF+VWMR AGL  FRK YG+I Q L+   T+TFN+
Sbjct:  141 CTPLERNG----DLTLSPCGLIANTLFNDIITVTSDQV-MEETGIAWNTDLDK-FEQPHGFVTTACA------ATDECASCLQAAYNSDDDYDGCGIATDASGTSYAYWYPDEDKIQYLYETFPDVISPLEGVKNEHFMVWMRVAGLRQFRKPYGKISQSLAKGTTVTFNV 299          
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: D8LE53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE53_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 1.610e-39
Identity = 84/185 (45.41%), Postives = 114/185 (61.62%), Query Frame = 1
Query:    1 GKTVVPD-EFCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVTMFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSE----ESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
            G T   D + CDPL    I      L+PCGLIAN++FNDI T+SS   TM E DI+W+SD   +F QP GF +              C  C ++    +S+    ++GC   TD+      Y+YPD D TQYLYET+P+++SP+DGV NEHFIVWMR +GL +FRK+YGRI+  L+  DTL+F++
Sbjct:  133 GSTSTSDIDDCDPL----IYNGTLVLHPCGLIANTLFNDIFTVSSGQ-TMEETDIAWDSDVADKFVQPDGFVTTACED------EDGCVACLTDAGLTDSDGGTTFEGC-GVTDST----AYYYPDEDTTQYLYETFPEVISPLDGVKNEHFIVWMRVSGLSSFRKLYGRIDDGLNEGDTLSFDV 301          
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: K0TBR7_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TBR7_THAOC)

HSP 1 Score: 146 bits (369), Expect = 8.550e-39
Identity = 77/165 (46.67%), Postives = 102/165 (61.82%), Query Frame = 1
Query:   73 LNPCGLIANSMFNDIITLSS---------ENVTMFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
            +NPCGLIAN++FND+ITL S         ++  + E  I+W+SD   +F+QP GF         CP     C DC    ++    +   E Y D +   F+Y+YPD++ TQYLYETYP +VSPIDGV+NEHF+VWMR A LP FRK+YG IE+ +    TLTF I
Sbjct:  213 INPCGLIANTLFNDVITLESIVTPDGTVLDDAPLVETGIAWQSDLEWKFRQPEGFRYEE-----CPGGEDEC-DCSQLGADGERLWSCTEPYRDEDGLYFRYYYPDDETTQYLYETYPMVVSPIDGVMNEHFVVWMRVAALPQFRKLYGYIERTIPAGSTLTFAI 371          
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A835Z5R6_9STRA (CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R6_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.690e-37
Identity = 83/189 (43.92%), Postives = 109/189 (57.67%), Query Frame = 1
Query:    1 GKTVVPDEFCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVT---------MFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
            G  V  D  C PL K    G+++ LNPCGLIANSMFND+ T+S+             M E  I+W +D + RF QP GF     G        +SC  C        A Y  C   TDA+   + Y+YP++  TQYL+ETYPK+VSP++GV NEHF+VWMRTA LPTFRK+YG I+ ++     + F+I
Sbjct:  132 GSNVQGDSLCSPLKKN---GDQW-LNPCGLIANSMFNDVFTVSAAPAPFDATAPAAYMRETGIAWPNDID-RFSQPDGFVKKSCGG------TASCASCLG------AGYTDCGVATDADGKRWAYYYPNDATTQYLHETYPKVVSPLEGVTNEHFMVWMRTAALPTFRKLYGIIDSDIPGGWDVQFDI 303          
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A6U4G101_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4G101_9STRA)

HSP 1 Score: 142 bits (357), Expect = 4.070e-37
Identity = 74/159 (46.54%), Postives = 102/159 (64.15%), Query Frame = 1
Query:   73 LNPCGLIANSMFNDIITLSSENVTMFEEDISWESDRNKRFKQPPGFASV-VVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENY--TDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
            L+PCGLIANS+FND+ITL +  + M E+DI+WESD++ +F QP  F      G G     +++C+   S   +   P D   N   T      + Y+Y + D   YLYE +P++++P++GV NEHFIVWMRTAGLP FRK+YGRIEQ++S    LTF I
Sbjct:  207 LSPCGLIANSLFNDVITLQNTEIDMAEDDIAWESDKDAKFDQPDDFVKERYTGTGTA--TDAACQTQLSSNGD--VPSDQLSNVGSTTFEGEQWCYFYNNEDDITYLYEVFPEVINPVEGVNNEHFIVWMRTAGLPQFRKLYGRIEQDISEGTQLTFQI 361          
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A7S3H619_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H619_9STRA)

HSP 1 Score: 139 bits (349), Expect = 6.930e-37
Identity = 84/176 (47.73%), Postives = 104/176 (59.09%), Query Frame = 1
Query:   28 CDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVT-----MFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
            C+PL K    G    LNPCGLIANS F DII L S + T     M E  IS +SDR+  FKQ  GFA V V        + SC     +         GC+ YTD N  ++ ++YP++D  QYLYETYP  +SPI GV +EHFIVWM+T+ LPTFRK+YGRIE   +  D L F+I
Sbjct:   96 CNPLYKN---GSML-LNPCGLIANSFFTDIIALDSASSTPGGLNMSETSISLKSDRDDIFKQVDGFAYVAVSD-----TSVSCVSVGLKA--------GCKAYTDLNGQDYLFYYPNDDTVQYLYETYPDQISPIVGVTDEHFIVWMKTSSLPTFRKLYGRIEGNFNKGDRLVFDI 254          
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Match: A0A7R9U6E4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U6E4_9STRA)

HSP 1 Score: 137 bits (346), Expect = 8.240e-36
Identity = 71/158 (44.94%), Postives = 104/158 (65.82%), Query Frame = 1
Query:   73 LNPCGLIANSMFNDIITLSSENVTMFEEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAPYDGCEN--YTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVWMRTAGLPTFRKVYGRIEQELSPPDTLTFNI 540
            L+PCGLIANS+FND+ITL++ +V M E+DISW+SDR+ +F QP  F S  +   +      +C     E+ E + P     +  +T     ++ ++Y + D+  YLYE YP++++P++GV NEHFIVWMRTAGLP FRK+YGRIE+++     L F I
Sbjct:  168 LSPCGLIANSLFNDVITLTNSDVEMREDDISWQSDRDAKFDQPDDFISERLRNTSASDKAQACI----EQLESDVPDSQVSSIGFTVFEGEDWCFFYRNEDQITYLYEIYPEVINPVEGVNNEHFIVWMRTAGLPQFRKLYGRIEEDIPKGTQLRFQI 321          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109957.806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEE3_9PHAE3.310e-6959.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6S9FRN7_HETAK6.750e-5350.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D8LLD4_ECTSI3.570e-4747.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CGC5_9STRA3.830e-4447.37CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=30... [more]
D8LE53_ECTSI1.610e-3945.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
K0TBR7_THAOC8.550e-3946.67Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A835Z5R6_9STRA3.690e-3743.92CDC50/LEM3 family n=1 Tax=Tribonema minus TaxID=30... [more]
A0A6U4G101_9STRA4.070e-3746.54Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S3H619_9STRA6.930e-3747.73Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7R9U6E4_9STRA8.240e-3644.94Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109957contigH-elongata_contig109957:376..2008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.1
Seed ortholog evalue1.3e-56
Seed eggNOG ortholog2880.D7FT99
Preferred nameTMEM30B
KEGG koko:K08817
GOsGO:0000323,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0004012,GO:0005215,GO:0005319,GO:0005548,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005770,GO:0005773,GO:0005774,GO:0005783,GO:0005794,GO:0005802,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0006855,GO:0006869,GO:0006886,GO:0006887,GO:0006897,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0007399,GO:0008104,GO:0008150,GO:0008509,GO:0008514,GO:0009987,GO:0010008,GO:0010570,GO:0010720,GO:0010876,GO:0010975,GO:0010976,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015247,GO:0015605,GO:0015711,GO:0015748,GO:0015833,GO:0015893,GO:0015914,GO:0015917,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022008,GO:0022857,GO:0023052,GO:0030141,GO:0030154,GO:0030659,GO:0030667,GO:0031090,GO:0031224,GO:0031344,GO:0031346,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0034204,GO:0034220,GO:0034613,GO:0035577,GO:0035579,GO:0036010,GO:0036230,GO:0040008,GO:0042119,GO:0042221,GO:0042493,GO:0042581,GO:0042582,GO:0042623,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043492,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045184,GO:0045321,GO:0045332,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0046903,GO:0046907,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051239,GO:0051240,GO:0051641,GO:0051649,GO:0051666,GO:0051716,GO:0051960,GO:0051962,GO:0055085,GO:0060284,GO:0060341,GO:0061024,GO:0065007,GO:0065008,GO:0070201,GO:0070727,GO:0070861,GO:0070863,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090087,GO:0090316,GO:0097035,GO:0097708,GO:0098588,GO:0098656,GO:0098657,GO:0098791,GO:0098805,GO:0098852,GO:0099503,GO:0120035,GO:1902494,GO:1903827,GO:1903829,GO:1904949,GO:1904951,GO:1990351,GO:1990530,GO:1990531,GO:2000026
EggNOG free text desc.aminophospholipid transmembrane transporter activity
EggNOG OGsCOG5035@1,KOG2952@2759
EC2.7.11.22
COG Functional cat.DKT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons3
Model size540
Cds size540
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109957.806.1prot_H-elongata_contig109957.806.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109957 376..2008 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929626.2322474-CDS-H-elongata_contig109957:375..5431622929626.2322474-CDS-H-elongata_contig109957:375..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109957 376..543 -
1691679096.602422-CDS-H-elongata_contig109957:375..5431691679096.602422-CDS-H-elongata_contig109957:375..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109957 376..543 -
1622929626.2498143-CDS-H-elongata_contig109957:1306..15661622929626.2498143-CDS-H-elongata_contig109957:1306..1566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109957 1307..1566 -
1691679096.6130662-CDS-H-elongata_contig109957:1306..15661691679096.6130662-CDS-H-elongata_contig109957:1306..1566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109957 1307..1566 -
1622929626.2707605-CDS-H-elongata_contig109957:1896..20081622929626.2707605-CDS-H-elongata_contig109957:1896..2008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109957 1897..2008 -
1691679096.6214714-CDS-H-elongata_contig109957:1896..20081691679096.6214714-CDS-H-elongata_contig109957:1896..2008Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109957 1897..2008 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109957.806.1

>prot_H-elongata_contig109957.806.1 ID=prot_H-elongata_contig109957.806.1|Name=mRNA_H-elongata_contig109957.806.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
GKTVVPDEFCDPLTKTTIDGEEFDLNPCGLIANSMFNDIITLSSENVTMF
EEDISWESDRNKRFKQPPGFASVVVGKGNCPYLNSSCEDCFSEESEDNAP
YDGCENYTDANNTNFKYWYPDNDKTQYLYETYPKIVSPIDGVLNEHFIVW
MRTAGLPTFRKVYGRIEQELSPPDTLTFNI
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mRNA from alignment at H-elongata_contig109957:376..2008-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109957.806.1 ID=mRNA_H-elongata_contig109957.806.1|Name=mRNA_H-elongata_contig109957.806.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1633bp|location=Sequence derived from alignment at H-elongata_contig109957:376..2008- (Himanthalia elongata Himel1 dioecious)
GGCAAGACCGTCGTGCCGGACGAGTTCTGTGACCCTCTCACGAAGACCAC GATTGACGGCGAGGAGTTCGACCTCAACCCGTGCGGCCTCATAGCGAACA GTATGTTTAACGGTGAGATTTTTTTTTTTTTTTTAGCGAGGAGGAGGGGG GGCAGTGGATGTTGTAATAGCTACGTCCGCCGCTGTATTTGCCTGCGCCT AAGCAGCACGTGCGTGCGTGCGTACAGACGGACGGACGGTGCCATGCAAC GGATGATTTTCGATAGCAGGGATTGATTAGCGATCTATTGATTAACGTGC ACAGCAAGGGCGATCTATTGATCGATCGCCACCCCCCTCGTCGCCGCCGA AATATCATGAGGCATTGTTGAGAGGTTCATATGACCATCGTCTGTTCCAT ACCCCTCTACGTCGTCTTTTATCCTCCTTCCTTTGGGTACAGACATAATA ACGCTATCATCGGAGAACGTAACGATGTTTGAAGAGGACATATCGTGGGA GTCGGACAGAAACAAGCGCTTCAAGCAGCCGCCAGGGTTTGCCTCCGTCG TGGTTGGGAAAGGAAACTGTCCCTACTTGAATTCGTCATGCGAGGACTGC TTCAGTGAAGAGAGTGAAGACAACGCTCCCTACGACGGCTGTGAAAATTA CACGGATGCGAACAACACGAACTTCAAGTACTGGTACCCAGACAACGATA AGGTACAAGGTCAGGCGGTGGTTGTAATAATAATGGTGGTTTAATATAGG AGAATCAGAGGGAAAATGAGGCGCCCCGGATCACGAAAATGAATCATTTT TGGTGTAGCACAGTCGCTTCTTTCAATCCCCATTGATAAACTTATATATA TATATATATATAGTTTTGAAGTGTTGACCAGCCAGGAAAGGGTAGCAGCC ATACTTGGGGATAAGAAGTGACATAAAAAGTCAAAAACATATGTAGTAGA CAGGAAACTATAGGAAAAAACGTTTTTGTGCCATTTTTGGGAAGTGGAAG GAACGATGATTGGCCGTCGCCATTCGATCATGAAGGGAAAAATGCCCCGT ACTTCCTTCCGAGGACGCGTGATGAATGGTCTAGTAACTAAGGCATGTAA AATTTGAGGACGCTTCCCGCGACGATTTCTCGCAGCAAGCATTTCGGGAG CTTGCCTGAAGAGCGAGGTCTTTCTGGGTGGGTTGATAACGACCGAGACA TTGTGGATTGCACCGCGTTGGTAGCTGAATGAGTTACCTTTATAAACGAC ACGTGTGTGTCATGTGTGTTGCGCTGCTCACCCCCTCCTATCACCTCCGT TTTTGCCCCACTGCCCTCGGAACACTTGAAGCCCCCCCACATTTTTATCT CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCT CCCACAACCCCCNNNNNNNNNNCTTTATCTCCCCCCCCTTCCCCCCCCCC CTCCTTCCACCGCAGACGCAGTACCTCTATGAAACCTACCCGAAAATAGT GAGTCCTATCGATGGCGTGCTAAACGAGCACTTCATCGTCTGGATGCGAA CAGCCGGATTGCCGACGTTCCGCAAGGTTTACGGGCGAATCGAGCAGGAG CTGTCACCCCCGGACACTCTGACGTTCAACATC
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Coding sequence (CDS) from alignment at H-elongata_contig109957:376..2008-

>mRNA_H-elongata_contig109957.806.1 ID=mRNA_H-elongata_contig109957.806.1|Name=mRNA_H-elongata_contig109957.806.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig109957:376..2008- (Himanthalia elongata Himel1 dioecious)
GGCAAGACCGTCGTGCCGGACGAGTTCTGTGACCCTCTCACGAAGACCAC
GATTGACGGCGAGGAGTTCGACCTCAACCCGTGCGGCCTCATAGCGAACA
GTATGTTTAACGGGCAAGACCGTCGTGCCGGACGAGTTCTGTGACCCTCT
CACGAAGACCACGATTGACGGCGAGGAGTTCGACCTCAACCCGTGCGGCC
TCATAGCGAACAGTATGTTTAACGACATAATAACGCTATCATCGGAGAAC
GTAACGATGTTTGAAGAGGACATATCGTGGGAGTCGGACAGAAACAAGCG
CTTCAAGCAGCCGCCAGGGTTTGCCTCCGTCGTGGTTGGGAAAGGAAACT
GTCCCTACTTGAATTCGTCATGCGAGGACTGCTTCAGTGAAGAGAGTGAA
GACAACGCTCCCTACGACGGCTGTGAAAATTACACGGATGCGAACAACAC
GAACTTCAAGTACTGGTACCCAGACAACGATAAGACATAATAACGCTATC
ATCGGAGAACGTAACGATGTTTGAAGAGGACATATCGTGGGAGTCGGACA
GAAACAAGCGCTTCAAGCAGCCGCCAGGGTTTGCCTCCGTCGTGGTTGGG
AAAGGAAACTGTCCCTACTTGAATTCGTCATGCGAGGACTGCTTCAGTGA
AGAGAGTGAAGACAACGCTCCCTACGACGGCTGTGAAAATTACACGGATG
CGAACAACACGAACTTCAAGTACTGGTACCCAGACAACGATAAGACGCAG
TACCTCTATGAAACCTACCCGAAAATAGTGAGTCCTATCGATGGCGTGCT
AAACGAGCACTTCATCGTCTGGATGCGAACAGCCGGATTGCCGACGTTCC
GCAAGGTTTACGGGCGAATCGAGCAGGAGCTGTCACCCCCGGACACTCTG
ACGTTCAACATCACGCAGTACCTCTATGAAACCTACCCGAAAATAGTGAG
TCCTATCGATGGCGTGCTAAACGAGCACTTCATCGTCTGGATGCGAACAG
CCGGATTGCCGACGTTCCGCAAGGTTTACGGGCGAATCGAGCAGGAGCTG
TCACCCCCGGACACTCTGACGTTCAACATC
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