mRNA_H-elongata_contig109899.802.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109899.802.1
Unique NamemRNA_H-elongata_contig109899.802.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Match: D7FM90_ECTSI (Protein disulfide-isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM90_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 1.980e-24
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    4 EDGVLVLDMSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKENLKIAKV 177
            EDGVLVLD SNF DA+ Q+PTLLVEFYAPWCGHCKKLAPEYA AA  LAKE+LKIAKV
Sbjct:   27 EDGVLVLDPSNFADAVAQNPTLLVEFYAPWCGHCKKLAPEYAKAAEALAKEDLKIAKV 84
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BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Match: A0A7N5K1X2_AILME (Thioredoxin domain-containing protein n=1 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=A0A7N5K1X2_AILME)

HSP 1 Score: 87.4 bits (215), Expect = 5.360e-21
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:    1 EEDGVLVLDMSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKEN--LKIAKV 177
            EE+GVLVL  +NFE ALEQ+P +LVEFYAPWCGHCK LAPEY  AA  L  EN  +++AKV
Sbjct:   27 EEEGVLVLKSANFEQALEQYPNILVEFYAPWCGHCKALAPEYVKAAAKLKDENSEIRLAKV 87
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BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Match: A0A673LMJ0_9TELE (Protein disulfide-isomerase n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=A0A673LMJ0_9TELE)

HSP 1 Score: 88.2 bits (217), Expect = 1.630e-20
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 EEDGVLVLDMSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKE--NLKIAKVGTKDD 192
            EE+ VLVL  SNFE+AL+ +P +LVEFYAPWCGHCK LAPEYA AAG+L  E  ++K+AKV   ++
Sbjct:   20 EEEDVLVLKKSNFEEALKTYPNILVEFYAPWCGHCKALAPEYAKAAGMLKAEGSDIKLAKVDATEE 85
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BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Match: A0A8C1SDD6_CYPCA (Protein disulfide-isomerase n=2 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1SDD6_CYPCA)

HSP 1 Score: 87.0 bits (214), Expect = 1.890e-20
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 EEDGVLVLDMSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKEN--LKIAKVGTKDD 192
            EE+ VLVL  SNFE+AL+ +P +LVEFYAPWCGHCK LAPEYA AAG+L  E+  +++AKV   ++
Sbjct:   20 EEEDVLVLKKSNFEEALKTYPNILVEFYAPWCGHCKALAPEYAKAAGMLKAESTDIRLAKVDATEE 85
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BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Match: A0A6J2W223_CHACN (Protein disulfide-isomerase n=2 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2W223_CHACN)

HSP 1 Score: 92.4 bits (228), Expect = 2.120e-20
Identity = 43/66 (65.15%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 EEDGVLVLDMSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKE--NLKIAKVGTKDD 192
            EED VLVL+ SNFE+AL+ HP LLVEFYAPWCGHCK LAPEYA AAG+L  E  ++++AKV   ++
Sbjct:   20 EEDDVLVLNKSNFEEALKAHPNLLVEFYAPWCGHCKALAPEYAKAAGMLKAEGSDIRLAKVDATEE 85
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BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Match: UPI001864216D (protein disulfide-isomerase n=2 Tax=Elopomorpha TaxID=32521 RepID=UPI001864216D)

HSP 1 Score: 92.0 bits (227), Expect = 2.900e-20
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 EEDGVLVLDMSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKE--NLKIAKVGTKDD 192
            EED VLVL  SNFE+AL+ HP +LVEFYAPWCGHCK LAPEYA AAGIL  E  ++++AKV   ++
Sbjct:   20 EEDDVLVLKKSNFEEALKAHPNILVEFYAPWCGHCKALAPEYAKAAGILKAEGSDIRLAKVDATEE 85
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BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Match: A0A812WVN2_9DINO (P4HB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WVN2_9DINO)

HSP 1 Score: 87.4 bits (215), Expect = 4.830e-20
Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 EEDGVLVLDMSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKENLKIAKV 177
            EED VLVL   NF++A++QH  LLVEFYAPWCGHCK+LAP YA+AA  L  + L+IAKV
Sbjct:   22 EEDDVLVLTNDNFDEAIKQHDPLLVEFYAPWCGHCKRLAPAYAAAAATLKNDGLRIAKV 80
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BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Match: UPI0007BA3C32 (protein disulfide-isomerase-like n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=UPI0007BA3C32)

HSP 1 Score: 88.2 bits (217), Expect = 6.040e-20
Identity = 41/66 (62.12%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:    1 EEDGVLVLDMSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKE--NLKIAKVGTKDD 192
            EE+ VLVL  SNFE+AL+ +P +LVEFYAPWCGHCK LAPEYA AAG+L  E  ++K+AKV   ++
Sbjct:   20 EEEDVLVLKKSNFEEALKTYPNILVEFYAPWCGHCKALAPEYAKAAGMLKAEGSDIKLAKVDATEE 85
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BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Match: A0A6I9PJI4_9TELE (Protein disulfide-isomerase n=1 Tax=Notothenia coriiceps TaxID=8208 RepID=A0A6I9PJI4_9TELE)

HSP 1 Score: 86.3 bits (212), Expect = 7.640e-20
Identity = 40/63 (63.49%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 EEDGVLVLDMSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKENLKIAKVGTKD 189
            EED VLVL  SNFE+AL+ HP +LVEFYAPWCGHCK L PEYA AAG+L K +  + ++G  D
Sbjct:   20 EEDDVLVLKKSNFEEALKAHPNILVEFYAPWCGHCKALVPEYAKAAGML-KADGSVVRLGKVD 81
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BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Match: A0A556VXC3_BAGYA (Protein disulfide-isomerase n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556VXC3_BAGYA)

HSP 1 Score: 90.9 bits (224), Expect = 8.260e-20
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    1 EEDGVLVLDMSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKEN--LKIAKVGTKDD 192
            EE+ VLVL  SNFE+ALE HP +LVEFYAPWCGHCK LAPEYA AAGIL +E   +++ KV   ++
Sbjct:  797 EEEDVLVLTKSNFEEALETHPNILVEFYAPWCGHCKALAPEYAKAAGILKEEGSAIRLGKVDATEE 862
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109899.802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM90_ECTSI1.980e-2484.48Protein disulfide-isomerase n=2 Tax=Ectocarpus Tax... [more]
A0A7N5K1X2_AILME5.360e-2167.21Thioredoxin domain-containing protein n=1 Tax=Ailu... [more]
A0A673LMJ0_9TELE1.630e-2062.12Protein disulfide-isomerase n=1 Tax=Sinocyclocheil... [more]
A0A8C1SDD6_CYPCA1.890e-2060.61Protein disulfide-isomerase n=2 Tax=Cyprinus carpi... [more]
A0A6J2W223_CHACN2.120e-2065.15Protein disulfide-isomerase n=2 Tax=Chanos chanos ... [more]
UPI001864216D2.900e-2065.15protein disulfide-isomerase n=2 Tax=Elopomorpha Ta... [more]
A0A812WVN2_9DINO4.830e-2066.10P4HB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
UPI0007BA3C326.040e-2062.12protein disulfide-isomerase-like n=1 Tax=Sinocyclo... [more]
A0A6I9PJI4_9TELE7.640e-2063.49Protein disulfide-isomerase n=1 Tax=Notothenia cor... [more]
A0A556VXC3_BAGYA8.260e-2063.64Protein disulfide-isomerase n=1 Tax=Bagarius yarre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109899contigH-elongata_contig109899:293..958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.1
Seed ortholog evalue3.5e-16
Seed eggNOG ortholog2880.D7FM90
Preferred nameP4HB
KEGG koko:K09580,ko:K09581,ko:K18274,ko:K20354
KEGG Pathwayko04141,map04141
GOsGO:0000003,GO:0001666,GO:0003006,GO:0003674,GO:0003756,GO:0003810,GO:0003824,GO:0004656,GO:0005102,GO:0005178,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005788,GO:0005791,GO:0005793,GO:0005886,GO:0006082,GO:0006457,GO:0006464,GO:0006520,GO:0006575,GO:0006621,GO:0006807,GO:0006928,GO:0006950,GO:0007154,GO:0007165,GO:0007166,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008104,GO:0008150,GO:0008152,GO:0009628,GO:0009897,GO:0009966,GO:0009986,GO:0009987,GO:0010033,GO:0010646,GO:0010941,GO:0012505,GO:0015036,GO:0015037,GO:0016020,GO:0016043,GO:0016222,GO:0016477,GO:0016491,GO:0016667,GO:0016705,GO:0016706,GO:0016740,GO:0016746,GO:0016755,GO:0016853,GO:0016860,GO:0016864,GO:0018126,GO:0018193,GO:0018208,GO:0018401,GO:0019221,GO:0019471,GO:0019511,GO:0019538,GO:0019752,GO:0019798,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0031543,GO:0031545,GO:0031967,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034097,GO:0034377,GO:0034378,GO:0034379,GO:0034613,GO:0034663,GO:0034975,GO:0034976,GO:0035437,GO:0035722,GO:0036211,GO:0036293,GO:0036294,GO:0036477,GO:0038155,GO:0040011,GO:0042221,GO:0042981,GO:0043025,GO:0043062,GO:0043067,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043687,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044297,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044877,GO:0045169,GO:0045185,GO:0046596,GO:0046598,GO:0046982,GO:0046983,GO:0048232,GO:0048468,GO:0048471,GO:0048515,GO:0048518,GO:0048524,GO:0048583,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050789,GO:0050792,GO:0050794,GO:0050839,GO:0050896,GO:0051179,GO:0051213,GO:0051235,GO:0051641,GO:0051651,GO:0051674,GO:0051704,GO:0051716,GO:0055114,GO:0060187,GO:0065003,GO:0065005,GO:0065007,GO:0065008,GO:0070013,GO:0070482,GO:0070671,GO:0070727,GO:0070732,GO:0070887,GO:0070972,GO:0071310,GO:0071345,GO:0071349,GO:0071453,GO:0071456,GO:0071704,GO:0071825,GO:0071827,GO:0071840,GO:0071944,GO:0072595,GO:0080058,GO:0080134,GO:0080135,GO:0097006,GO:0097458,GO:0098552,GO:0140096,GO:1900407,GO:1901564,GO:1901605,GO:1902175,GO:1902494,GO:1902531,GO:1902882,GO:1903201,GO:1903900,GO:1903902,GO:1990204,GO:2001233,GO:2001242
EggNOG free text desc.intramolecular oxidoreductase activity, transposing S-S bonds
EggNOG OGsCOG0526@1,KOG0190@2759
EC5.3.4.1
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00537,ko01000,ko03110,ko04131,ko04147
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size195
Cds size168
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109899.802.1prot_H-elongata_contig109899.802.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109899 293..931 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.7346847-CDS-H-elongata_contig109899:292..4301622929625.7346847-CDS-H-elongata_contig109899:292..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109899 293..430 -
1691679096.4298599-CDS-H-elongata_contig109899:292..4301691679096.4298599-CDS-H-elongata_contig109899:292..430Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109899 293..430 -
1622929625.7545187-CDS-H-elongata_contig109899:901..9311622929625.7545187-CDS-H-elongata_contig109899:901..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109899 902..931 -
1691679096.4399178-CDS-H-elongata_contig109899:901..9311691679096.4399178-CDS-H-elongata_contig109899:901..931Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109899 902..931 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.7710118-UTR-H-elongata_contig109899:931..9581622929625.7710118-UTR-H-elongata_contig109899:931..958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109899 932..958 -
1691679096.4476213-UTR-H-elongata_contig109899:931..9581691679096.4476213-UTR-H-elongata_contig109899:931..958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109899 932..958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109899.802.1

>prot_H-elongata_contig109899.802.1 ID=prot_H-elongata_contig109899.802.1|Name=mRNA_H-elongata_contig109899.802.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=56bp
MSNFEDALEQHPTLLVEFYAPWCGHCKKLAPEYASAAGILAKENLKIAKV
GTKDD*
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mRNA from alignment at H-elongata_contig109899:293..958-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109899.802.1 ID=mRNA_H-elongata_contig109899.802.1|Name=mRNA_H-elongata_contig109899.802.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=666bp|location=Sequence derived from alignment at H-elongata_contig109899:293..958- (Himanthalia elongata Himel1 dioecious)
GAAGAGGATGGCGTGCTGGTGCTCGATATGTCAAACTTCGAGGACGCCTT
GGAACAGGTACGTCAATATAGGTAAAGGTCTCTTTGCGAAGCCGTTGCCT
CGATTGAAGTCCTAGTCCCCTGGAGAAACTGCAGATAATACAGTAGTTGG
TTGGTTACAGCACACACCTGGGGTCTGTTTGATCGGAATAGAGTCACTAT
AGCAGAACAACAGCACTGTGGTTTTCCGTAGCTCCTGCGTGTATGTATAA
ATATAGAGGTATATTTTTACTTATTTGACGACTCTTTTTCATTTTACTAC
TTTTCTATCATATCTCTCGTCGGAGGAATTATTGCGACTGTTTGGTTGGT
GATAGCTGAATAAAGGGCAGATTGCCGAGAAAGAACCAAGCAGCTTGATT
AGGGATGAAAGAGGTATATACTTGCGATCGGTGATCGGTGCAGTAGAGTT
ATTCTACCAGCGGTTGTGAACCTACTGACTTTATTTTGGCGCCGTCTCGT
ATCTCTGTCCCCAATCATTTTCCTGTAGCACCCTACCCTCCTGGTGGAGT
TCTACGCACCGTGGTGTGGGCATTGCAAAAAGCTCGCCCCTGAGTATGCC
AGTGCTGCTGGAATACTCGCCAAGGAAAACCTCAAGATTGCGAAGGTGGG
GACAAAGGATGATTAG
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Coding sequence (CDS) from alignment at H-elongata_contig109899:293..958-

>mRNA_H-elongata_contig109899.802.1 ID=mRNA_H-elongata_contig109899.802.1|Name=mRNA_H-elongata_contig109899.802.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=336bp|location=Sequence derived from alignment at H-elongata_contig109899:293..958- (Himanthalia elongata Himel1 dioecious)
ATGTCAAACTTCGAGGACGCCTTGGAACAGATGTCAAACTTCGAGGACGC
CTTGGAACAGCACCCTACCCTCCTGGTGGAGTTCTACGCACCGTGGTGTG
GGCATTGCAAAAAGCTCGCCCCTGAGTATGCCAGTGCTGCTGGAATACTC
GCCAAGGAAAACCTCAAGATTGCGAAGGTGGGGACAAAGGATGATTAGCA
CCCTACCCTCCTGGTGGAGTTCTACGCACCGTGGTGTGGGCATTGCAAAA
AGCTCGCCCCTGAGTATGCCAGTGCTGCTGGAATACTCGCCAAGGAAAAC
CTCAAGATTGCGAAGGTGGGGACAAAGGATGATTAG
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