mRNA_H-elongata_contig109898.801.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109898.801.1
Unique NamemRNA_H-elongata_contig109898.801.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109898.801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109898contigH-elongata_contig109898:563..1339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_000630.1
Hectar predicted targeting categoryother localisation
Exons1
Model size777
Cds size777
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.6715603-CDS-H-elongata_contig109898:562..13391622929625.6715603-CDS-H-elongata_contig109898:562..1339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109898 563..1339 +
1691679096.4208636-CDS-H-elongata_contig109898:562..13391691679096.4208636-CDS-H-elongata_contig109898:562..1339Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109898 563..1339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109898.801.1prot_H-elongata_contig109898.801.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109898 563..1339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109898.801.1

>prot_H-elongata_contig109898.801.1 ID=prot_H-elongata_contig109898.801.1|Name=mRNA_H-elongata_contig109898.801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp
KSNTGSGNPSASGSTAAAGSNEVSTMLNTPGAFPVPGGFSGGAGGVAFNA
LGSDPFAGAGTSSGGSLSASNKYQQRPQQQQQGGAAAVSASAAVGVSSFG
GNGGSDSNSSGLVTVEGGENGSASNRGHHEATVNGVDGTKASDSVGFNAG
EGVNGSAGAGMGATPADSNEYSLMPEQQQVQQQVGVDIDGASGCVMDLGN
GGTGGMYPGVNGQQQQQGTAGMTGMFGDNVGAAMIGAGAFGGAILGVGGG
NPGAGYGYM
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mRNA from alignment at H-elongata_contig109898:563..1339+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109898.801.1 ID=mRNA_H-elongata_contig109898.801.1|Name=mRNA_H-elongata_contig109898.801.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=777bp|location=Sequence derived from alignment at H-elongata_contig109898:563..1339+ (Himanthalia elongata Himel1 dioecious)
AAGAGTAATACAGGCTCTGGAAATCCATCGGCGTCGGGATCCACAGCGGC
AGCGGGCTCAAACGAGGTGTCGACCATGCTGAACACCCCGGGGGCGTTCC
CAGTTCCCGGAGGCTTTTCGGGGGGTGCCGGTGGGGTCGCCTTTAACGCC
CTCGGTTCGGATCCATTCGCTGGCGCTGGGACCTCGTCGGGAGGCTCCTT
GTCCGCCTCTAACAAGTACCAGCAGCGTCCGCAGCAGCAGCAACAGGGTG
GCGCTGCTGCAGTATCGGCGTCGGCAGCAGTCGGAGTCAGCAGCTTTGGG
GGAAATGGAGGGTCGGATAGCAATAGCAGCGGCTTGGTAACTGTCGAAGG
GGGAGAAAATGGAAGCGCCAGCAACCGTGGTCACCACGAGGCGACGGTAA
ACGGTGTCGATGGGACGAAAGCGTCTGATTCCGTGGGTTTCAACGCGGGT
GAAGGTGTGAATGGTTCTGCGGGGGCCGGGATGGGAGCCACCCCTGCCGA
TTCGAACGAGTACTCCCTAATGCCAGAACAGCAGCAAGTCCAACAGCAAG
TCGGAGTTGATATCGATGGGGCGAGCGGGTGCGTTATGGACCTTGGGAAC
GGAGGCACTGGTGGGATGTACCCGGGAGTTAACGGGCAGCAGCAACAGCA
GGGAACCGCCGGGATGACGGGAATGTTCGGAGACAACGTCGGTGCGGCGA
TGATAGGGGCTGGCGCGTTCGGAGGAGCGATCCTTGGCGTCGGCGGCGGG
AACCCTGGGGCTGGCTACGGTTACATG
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Coding sequence (CDS) from alignment at H-elongata_contig109898:563..1339+

>mRNA_H-elongata_contig109898.801.1 ID=mRNA_H-elongata_contig109898.801.1|Name=mRNA_H-elongata_contig109898.801.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig109898:563..1339+ (Himanthalia elongata Himel1 dioecious)
AAGAGTAATACAGGCTCTGGAAATCCATCGGCGTCGGGATCCACAGCGGC
AGCGGGCTCAAACGAGGTGTCGACCATGCTGAACACCCCGGGGGCGTTCC
CAGTTCCCGGAGGCTTTTCGGGGGGTGCCGGTGGGGTCGCCTTTAACGCC
CTCGGTTCGGATCCATTCGCTGGCGCTGGGACCTCGTCGGGAGGCTCCTT
GTCCGCCTCTAACAAGTACCAGCAGCGTCCGCAGCAGCAGCAACAGGGTG
GCGCTGCTGCAGTATCGGCGTCGGCAGCAGTCGGAGTCAGCAGCTTTGGG
GGAAATGGAGGGTCGGATAGCAATAGCAGCGGCTTGGTAACTGTCGAAGG
GGGAGAAAATGGAAGCGCCAGCAACCGTGGTCACCACGAGGCGACGGTAA
ACGGTGTCGATGGGACGAAAGCGTCTGATTCCGTGGGTTTCAACGCGGGT
GAAGGTGTGAATGGTTCTGCGGGGGCCGGGATGGGAGCCACCCCTGCCGA
TTCGAACGAGTACTCCCTAATGCCAGAACAGCAGCAAGTCCAACAGCAAG
TCGGAGTTGATATCGATGGGGCGAGCGGGTGCGTTATGGACCTTGGGAAC
GGAGGCACTGGTGGGATGTACCCGGGAGTTAACGGGCAGCAGCAACAGCA
GGGAACCGCCGGGATGACGGGAATGTTCGGAGACAACGTCGGTGCGGCGA
TGATAGGGGCTGGCGCGTTCGGAGGAGCGATCCTTGGCGTCGGCGGCGGG
AACCCTGGGGCTGGCTACGGTTACATGAAGAGTAATACAGGCTCTGGAAA
TCCATCGGCGTCGGGATCCACAGCGGCAGCGGGCTCAAACGAGGTGTCGA
CCATGCTGAACACCCCGGGGGCGTTCCCAGTTCCCGGAGGCTTTTCGGGG
GGTGCCGGTGGGGTCGCCTTTAACGCCCTCGGTTCGGATCCATTCGCTGG
CGCTGGGACCTCGTCGGGAGGCTCCTTGTCCGCCTCTAACAAGTACCAGC
AGCGTCCGCAGCAGCAGCAACAGGGTGGCGCTGCTGCAGTATCGGCGTCG
GCAGCAGTCGGAGTCAGCAGCTTTGGGGGAAATGGAGGGTCGGATAGCAA
TAGCAGCGGCTTGGTAACTGTCGAAGGGGGAGAAAATGGAAGCGCCAGCA
ACCGTGGTCACCACGAGGCGACGGTAAACGGTGTCGATGGGACGAAAGCG
TCTGATTCCGTGGGTTTCAACGCGGGTGAAGGTGTGAATGGTTCTGCGGG
GGCCGGGATGGGAGCCACCCCTGCCGATTCGAACGAGTACTCCCTAATGC
CAGAACAGCAGCAAGTCCAACAGCAAGTCGGAGTTGATATCGATGGGGCG
AGCGGGTGCGTTATGGACCTTGGGAACGGAGGCACTGGTGGGATGTACCC
GGGAGTTAACGGGCAGCAGCAACAGCAGGGAACCGCCGGGATGACGGGAA
TGTTCGGAGACAACGTCGGTGCGGCGATGATAGGGGCTGGCGCGTTCGGA
GGAGCGATCCTTGGCGTCGGCGGCGGGAACCCTGGGGCTGGCTACGGTTA
CATG
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