mRNA_H-elongata_contig100896.80.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig100896.80.1
Unique NamemRNA_H-elongata_contig100896.80.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 2.800e-18
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK--LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
            PGP HWRAA++AL+YL  TR  G+  GG        LSA++DADY  CPDTRR VSG  ++  G  ISW ++ + +   +++E+E+V L+  + E  ++
Sbjct:  663 PGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLSTTEAEFVALSLCIQECLYI 761          
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: V5GIW0_ANOGL (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=V5GIW0_ANOGL)

HSP 1 Score: 81.6 bits (200), Expect = 4.600e-18
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 1
Query:    4 GPTHWRAAQKALQYLWRTRDLGITYGGETGGGKLSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
            G  HW AA+  L+YL  T +LG+T+        L A++DAD+G CP+ R+S +G   M+ GG ISW +R +K  A +S+E+EY+ L+E V E  +L
Sbjct:    5 GKEHWTAAKCVLRYLKGTINLGLTF--TKNSESLKAFVDADWGNCPNDRKSYTGYVFMLGGGPISWDARKQKTVALSSTEAEYMALSEAVKEAEYL 98          
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 2.550e-17
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK--LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
            P P HWRAA++AL+YL  TR  G+  GG        LSA++DADY  CPDTRR VSG  ++  G  ISW ++ + +   +++E+E+V L+  + E  ++
Sbjct: 1807 PDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVALSLCIQECLYI 1905          
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6G0X457_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X457_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.580e-17
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK--LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
            PGP HWRAA++ L+Y+  TR  G+  GG     K  LSA++DADY  C DTRR VSG  +++ G  ISW ++ + +   +++E+E+V LA  + E  ++
Sbjct:  600 PGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSGYVLLLFGSPISWLAKKQNIVTLSTTEAEFVALALCIQECLYI 698          
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: W2WEK3_PHYPR (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2WEK3_PHYPR)

HSP 1 Score: 84.7 bits (208), Expect = 4.670e-17
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 1
Query:    1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGKLSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNE 279
            PG  HW+AA + L+YL  TR+LGI Y G + G KL+A+ DAD+G+ PD RRSVSG  V ++G  + + S+ ++  A +S+E+EY+ L     E
Sbjct: 1034 PGQQHWKAAIRVLRYLKGTRELGIVYSGTSSGVKLTAYTDADWGSNPDDRRSVSGTMVTISGAPVIFKSKYQRTVALSSAEAEYMALGLCTQE 1126          
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6G0X4C5_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X4C5_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 4.730e-17
Identity = 41/99 (41.41%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK--LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
            PGP HWRAA++ L+Y+  TR  G+  GG     K  LSA++DADY  C DTRR VSG  +++ G  ISW ++ + +   +++E+E+V LA  + E  ++
Sbjct: 1595 PGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSGYVLLLFGSPISWLAKKQNIVTLSTTEAEFVALALCIQECLYI 1693          
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A8H7M0F2_9AGAM (Gag-polypeptide of LTR copia-type n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H7M0F2_9AGAM)

HSP 1 Score: 81.6 bits (200), Expect = 7.880e-17
Identity = 41/97 (42.27%), Postives = 60/97 (61.86%), Query Frame = 1
Query:    1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGKLSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
            PG  HW   +++LQYL  T+D+GI Y  ++ G  L  ++DA+Y   P+T RS +G A MMAGG ++W SR +   +  S+E+EYV  A    EL +L
Sbjct:   52 PGQDHWNGFKRSLQYLQGTKDIGIVYR-QSAGSTLIGYVDANYAGDPNTSRSTTGWAFMMAGGCVAWSSRKQPTISLLSTEAEYVAAASATRELIWL 147          
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A328KN85_9BACI (Uncharacterized protein (Fragment) n=1 Tax=Bacillus sp. SRB_8 TaxID=1969377 RepID=A0A328KN85_9BACI)

HSP 1 Score: 79.3 bits (194), Expect = 9.270e-17
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    1 PGPTHWRAAQKALQYLWRTRDLGITYGG-ETGGGKLSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
            PG  HW AAQ+ L+YL  T   GITY   E G   L  + D+D+   PDTRRS SG A M+AGG +SW S+++   + +S E+EY+ L     E  +L
Sbjct:   35 PGRPHWVAAQRVLRYLAGTSSFGITYHRQEQGSSDLFGYSDSDWAGDPDTRRSTSGFAFMLAGGPVSWKSKLQSSVSLSSVEAEYIALCSAAREAYWL 132          
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6G0W2A7_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W2A7_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.140e-16
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 1
Query:    1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK--LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
            PGP HWRAA++ L+Y+  TR  G+  GG     K  LSA++DADY  C DTRR VSG  +++ G  ISW ++ + +   +++E+E+V L   + E  ++
Sbjct:  398 PGPAHWRAAKRVLRYINGTRSRGLLLGGSDFIHKPFLSAYVDADYANCKDTRRCVSGYVLLLLGSPISWLAKKQNIVTLSTTEAEFVALVLCIQECLYI 496          
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Match: A0A6A4YVS9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4YVS9_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.360e-16
Identity = 42/100 (42.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:    1 PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGK---LSAWIDADYGTCPDTRRSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFL 291
            PGPTHW A Q+AL+YL  TR  GI  GG         LSA++DA+Y  C DTRR +SG   +  G  +SW ++ + +   +++E+E+V LA  + EL +L
Sbjct:   38 PGPTHWSAVQRALRYLKGTRTYGIRLGGIASIDDFPFLSAYVDANYAMCVDTRRCISGFFTLFFGSPVSWLAKKQPLVTLSTTEAEFVALALCIQELLYL 137          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100896.80.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0W6P6_9STRA2.800e-1842.42Integrase catalytic domain-containing protein n=1 ... [more]
V5GIW0_ANOGL4.600e-1842.71Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0W780_9STRA2.550e-1741.41Integrase catalytic domain-containing protein n=3 ... [more]
A0A6G0X457_9STRA4.580e-1741.41Reverse transcriptase Ty1/copia-type domain-contai... [more]
W2WEK3_PHYPR4.670e-1745.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0X4C5_9STRA4.730e-1741.41Uncharacterized protein n=3 Tax=Aphanomyces euteic... [more]
A0A8H7M0F2_9AGAM7.880e-1742.27Gag-polypeptide of LTR copia-type n=1 Tax=Rhizocto... [more]
A0A328KN85_9BACI9.270e-1743.88Uncharacterized protein (Fragment) n=1 Tax=Bacillu... [more]
A0A6G0W2A7_9STRA1.140e-1640.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A4YVS9_9STRA1.360e-1642.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100896contigH-elongata_contig100896:1527..1820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score84.3
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog160860.XP_007353053.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929549.933898-CDS-H-elongata_contig100896:1526..18201622929549.933898-CDS-H-elongata_contig100896:1526..1820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100896 1527..1820 +
1691679065.3911183-CDS-H-elongata_contig100896:1526..18201691679065.3911183-CDS-H-elongata_contig100896:1526..1820Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig100896 1527..1820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100896.80.1prot_H-elongata_contig100896.80.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig100896 1527..1820 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig100896.80.1

>prot_H-elongata_contig100896.80.1 ID=prot_H-elongata_contig100896.80.1|Name=mRNA_H-elongata_contig100896.80.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
PGPTHWRAAQKALQYLWRTRDLGITYGGETGGGKLSAWIDADYGTCPDTR
RSVSGGAVMMAGGVISWFSRVKKVTAAASSESEYVPLAEMVNELRFLL
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mRNA from alignment at H-elongata_contig100896:1527..1820+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig100896.80.1 ID=mRNA_H-elongata_contig100896.80.1|Name=mRNA_H-elongata_contig100896.80.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig100896:1527..1820+ (Himanthalia elongata Himel1 dioecious)
CCGGGACCGACACACTGGAGGGCAGCACAGAAAGCTCTGCAATATTTATG GCGCACTCGGGACCTCGGGATCACCTACGGAGGGGAAACGGGGGGGGGCA AGTTATCAGCGTGGATCGACGCAGACTACGGCACCTGCCCAGACACGCGT CGCTCTGTGTCGGGAGGGGCAGTGATGATGGCTGGCGGGGTCATTAGTTG GTTCTCACGAGTGAAAAAGGTAACGGCGGCGGCGTCGTCTGAATCGGAAT ACGTCCCGCTGGCTGAGATGGTAAACGAGTTACGTTTCCTACTA
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Coding sequence (CDS) from alignment at H-elongata_contig100896:1527..1820+

>mRNA_H-elongata_contig100896.80.1 ID=mRNA_H-elongata_contig100896.80.1|Name=mRNA_H-elongata_contig100896.80.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig100896:1527..1820+ (Himanthalia elongata Himel1 dioecious)
CCGGGACCGACACACTGGAGGGCAGCACAGAAAGCTCTGCAATATTTATG
GCGCACTCGGGACCTCGGGATCACCTACGGAGGGGAAACGGGGGGGGGCA
AGTTATCAGCGTGGATCGACGCAGACTACGGCACCTGCCCAGACACGCGT
CGCTCTGTGTCGGGAGGGGCAGTGATGATGGCTGGCGGGGTCATTAGTTG
GTTCTCACGAGTGAAAAAGGTAACGGCGGCGGCGTCGTCTGAATCGGAAT
ACGTCCCGCTGGCTGAGATGGTAAACGAGTTACGTTTCCTACTACCGGGA
CCGACACACTGGAGGGCAGCACAGAAAGCTCTGCAATATTTATGGCGCAC
TCGGGACCTCGGGATCACCTACGGAGGGGAAACGGGGGGGGGCAAGTTAT
CAGCGTGGATCGACGCAGACTACGGCACCTGCCCAGACACGCGTCGCTCT
GTGTCGGGAGGGGCAGTGATGATGGCTGGCGGGGTCATTAGTTGGTTCTC
ACGAGTGAAAAAGGTAACGGCGGCGGCGTCGTCTGAATCGGAATACGTCC
CGCTGGCTGAGATGGTAAACGAGTTACGTTTCCTACTA
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