mRNA_H-elongata_contig109878.799.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109878.799.1
Unique NamemRNA_H-elongata_contig109878.799.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.170e-55
Identity = 105/189 (55.56%), Postives = 130/189 (68.78%), Query Frame = -2
Query:   53 NSAASGGSLYISNSKVNLTDVRFVGDHTSSGAVIFFADTDARAINVSIIAPAELAGDFALQVDSDSVLKAFSCSFEEWSSDDSLIVSEGELVLDACDFSHSSNPILFRALSPAVIRNAILGDNNYASAGNDASTIFGFDAQTCSDLSEDYSCQSTEHENSCLDAEHGMGVLCTAYIVAATGNNISLTDV 619
            NSAASGG++Y+S+S  NLTD+R  GDHT SGA +FFA  DARA+NV+ +AP EL   FAL VDS S  +AF+C FE WS D   +VSEG++VLDACDFS S  P L RA     IRNA+LGD N+  AG +AS++ G  A  CS L E+ SC   E    C+DAE+GMGVLC ++  AATG   +L DV
Sbjct:  606 NSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEELEATFALHVDSGSAFRAFACVFEGWSGDSPSVVSEGDMVLDACDFSGSGTPTLVRASRTVTIRNAVLGDQNFGHAGFNASSLLGVGAHGCSSLPEELSCSVPEE---CVDAENGMGVLCPSFTEAATGGLFTLADV 791          
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.010e-54
Identity = 103/189 (54.50%), Postives = 128/189 (67.72%), Query Frame = -2
Query:   53 NSAASGGSLYISNSKVNLTDVRFVGDHTSSGAVIFFADTDARAINVSIIAPAELAGDFALQVDSDSVLKAFSCSFEEWSSDDSLIVSEGELVLDACDFSHSSNPILFRALSPAVIRNAILGDNNYASAGNDASTIFGFDAQTCSDLSEDYSCQSTEHENSCLDAEHGMGVLCTAYIVAATGNNISLTDV 619
            NSAASGG++Y+S+S  NLTD+R  GDHT SGA +FFA  DARA+NV+ +AP EL   FAL VDS S  +AF+C FE W  D   ++SEGE+VLD CDFS S  P L RA     IRNA+LGD N+  AG +AS++ G  A  CS L E+ SC   E    C+DAE+GMGVLC ++   ATG  +SL DV
Sbjct:  608 NSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEELEATFALHVDSGSAFRAFACVFEGWDGDSPSVLSEGEMVLDVCDFSGSGTPTLVRASRAVTIRNAVLGDQNFGHAGFNASSLLGVGAHGCSSLPEELSCSVAEE---CVDAENGMGVLCPSFTEDATGGLVSLADV 793          
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 4.510e-8
Identity = 59/187 (31.55%), Postives = 90/187 (48.13%), Query Frame = -2
Query:   95 NSAASGGSLYI-SNSKVNLTDVRFVGDHTSSGAVIFFADTDARAINVSIIAPAELAGDF-ALQVDSDSVLKAFSCSFEEWSSDDSLIVSEGELVLDACDFSHSSNPILFRAL--SPAVIRNAILGDNNY------ASAGNDASTIFGFDAQ--TCSDLSEDYSCQSTEHENSCLDAEHGMGVLCTAY 619
            NSA +G ++Y   N++V L  V    +  + G+V+F   ++      ++    E + D  A+Q D DS  KA   SF  ++ + +++ SEG L LD CDFS S+  +L  +   S  V+RNA+LGDNNY      AS   D  T     +   TC       S       + C+D +  +GV C  Y
Sbjct:  577 NSALAGPAIYARDNAEVVLRGVELYDNVVARGSVVFIVSSNLTTYQ-TVFTDTEGSSDLSAVQADEDSSYKAEDTSFVGFAGE-AVVFSEGILYLDDCDFSGSAASVLVYSERNSTTVVRNAVLGDNNYFDVAEAASEAGDIPTAHSLISVNVTCDGWMPFSSTPPCSEGSPCIDGD--LGVYCQCY 759          
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 1.990e-7
Identity = 56/186 (30.11%), Postives = 83/186 (44.62%), Query Frame = -2
Query:   95 NSAASGGSLYI-SNSKVNLTDVRFVGDHTSSGAVIFFADTDARAINVSIIAPAELAGDFALQVDSDSVLKAFSCSFEEWSSDDSLIVSEGELVLDACDFSHSSNPILFRAL--SPAVIRNAILGDNNYASAGNDASTIFGFDAQ--------TCSDLSEDYSCQSTEHENSCLDAEHGMGVLCTAY 619
            NSA +G ++Y   N++V L  V    +  + G+V+F   ++           A      A+Q D DS  KA   SF  ++   +++ SEG L LD C+FS S+  +L  +   S  V+RNA+LGDNNY      AST               TC       S       + C+D +  +GV C  Y
Sbjct:  227 NSALAGPAIYARDNAEVVLRGVELCDNVVARGSVVFVVSSNLTTYQTVFTDTAGSPDLSAVQADEDSSYKAEDTSFVGFAGR-AVVFSEGTLYLDECNFSGSTASVLVYSEGDSTTVVRNAVLGDNNYFDVAKAASTANEIPTAHSLINVNVTCDGWMPFSSTSPCSEGSPCIDGD--LGVYCQCY 409          
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.730e-7
Identity = 60/187 (32.09%), Postives = 93/187 (49.73%), Query Frame = -2
Query:   80 NSAASGGSLYI-SNSKVNLTDVRFVGDHTSSGAVIFFADTDARAINVSIIAPAELAGDFALQVDSDSVLKAFSCSFEEWSSDDSLIVSEGELVLDACDFSHSSNPILFRA-LSPA-VIRNAILGDNNYASAGNDASTIFGFDAQTCSDLSEDYSCQSTEHENSC----LDAEHGMGVLCTAYIVAAT 619
            NSA  G ++Y   N+ V L  V    +  + G+ IF  ++      V +   +E +   A+Q D+ S   A    F  ++ +  ++ SEGEL LD CDFS SS+ +L  A L  A VIRNA+LG NNY +   DAS +    +   S ++ + +C S+   + C       E  +GV C  Y + +T
Sbjct:  451 NSALIGPAIYARDNAVVALRGVEVSDNFVTRGSAIFLVNSTFITSQVVVNDTSENSDLSAVQTDALSTYTAQDTCFVGFAGE-VVVYSEGELYLDECDFSGSSSAVLVYAELEDATVIRNAVLGANNYETIAEDASEMLQLPSAD-SFINLNLTCNSSSAVSPCGVGSWCLEGDLGVYCEHYQLRST 635          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTT7_ECTSI1.170e-5555.56Polymorphic Outer membrane protein G/I family n=1 ... [more]
A0A6H5JUJ2_9PHAE1.010e-5454.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0B0_ECTSI4.510e-831.55Adhesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
D7G0A8_ECTSI1.990e-730.11Polymorphic outer membrane protein n=1 Tax=Ectocar... [more]
D7G119_ECTSI2.730e-732.09Asn/thr-rich large protein family protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109878contigH-elongata_contig109878:1167..1786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size622
Cds size357
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.5031793-UTR-H-elongata_contig109878:1166..14291622929625.5031793-UTR-H-elongata_contig109878:1166..1429Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109878 1167..1429 +
1691679096.3637228-UTR-H-elongata_contig109878:1166..14291691679096.3637228-UTR-H-elongata_contig109878:1166..1429Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109878 1167..1429 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.5167987-CDS-H-elongata_contig109878:1429..17861622929625.5167987-CDS-H-elongata_contig109878:1429..1786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109878 1430..1786 +
1691679096.3741324-CDS-H-elongata_contig109878:1429..17861691679096.3741324-CDS-H-elongata_contig109878:1429..1786Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109878 1430..1786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109878.799.1prot_H-elongata_contig109878.799.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109878 1430..1786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109878.799.1

>prot_H-elongata_contig109878.799.1 ID=prot_H-elongata_contig109878.799.1|Name=mRNA_H-elongata_contig109878.799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp
MAFRITAGLRARNKMGLELWLKSHASNTSSPSLTMRLSSLLHSSKLQENA
LSTESESTCSAKSPANSAGAMILTLIARASVSAKNITAPDEVWSPTNRTS
VRLTLLLLIYNDPPEAAEL
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mRNA from alignment at H-elongata_contig109878:1167..1786+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109878.799.1 ID=mRNA_H-elongata_contig109878.799.1|Name=mRNA_H-elongata_contig109878.799.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=620bp|location=Sequence derived from alignment at H-elongata_contig109878:1167..1786+ (Himanthalia elongata Himel1 dioecious)
GTGATGATGATGATGCCGAGGCGAAGGTGGCGACGAGCTCGACCGGGTAA CCAACATCAGTAAGGGAGATATTATTTCCGGTTGCCGCTACTATATACGC TGTACAGAGAACACCCATGCCGTGTTCGGCGTCTAGGCAACTATTTTCAT GTTCGGTGCTTTGGCAAGAATAATCCTCCGATAGGTCGGAGCATGTTTGA GCGTCGAAGCCGAAGATAGTGGAGGCGTCGTTCCCTGCGGAGGCGTAATT ATTGTCCCCGAGTATGGCGTTCCGTATAACGGCCGGGCTCAGGGCGCGAA ACAAAATGGGATTGGAGCTATGGCTAAAGTCGCACGCGTCCAACACGAGT TCTCCTTCGCTCACAATGAGGCTATCGTCGCTACTCCACTCCTCGAAGCT ACAAGAGAATGCCTTGAGTACAGAATCGGAATCAACTTGCAGCGCAAAGT CACCCGCCAACTCCGCTGGCGCGATGATACTGACATTGATAGCACGTGCG TCTGTATCGGCGAAAAATATCACTGCCCCCGACGAGGTATGGTCTCCCAC GAATCGAACGTCGGTGAGGTTGACTTTGCTATTGCTGATATACAACGACC CCCCGGAGGCGGCTGAGTTA
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Coding sequence (CDS) from alignment at H-elongata_contig109878:1167..1786+

>mRNA_H-elongata_contig109878.799.1 ID=mRNA_H-elongata_contig109878.799.1|Name=mRNA_H-elongata_contig109878.799.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig109878:1167..1786+ (Himanthalia elongata Himel1 dioecious)
ATGGCGTTCCGTATAACGGCCGGGCTCAGGGCGCGAAACAAAATGGGATT
GGAGCTATGGCTAAAGTCGCACGCGTCCAACACGAGTTCTCCTTCGCTCA
CAATGAGGCTATCGTCGCTACTCCACTCCTCGAAGCTACAAGAGAATGCC
TTGAGTACAGAATCGGAATCAACTTGCAGCGCAAAGTCACCCGCCAACTC
CGCTGGCGCGATGATACTGACATTGATAGCACGTGCGTCTGTATCGGCGA
AAAATATCACTGCCCCCGACGAGGTATGGTCTCCCACGAATCGAACGTCG
GTGAGGTTGACTTTGCTATTGCTGATATACAACGACCCCCCGGAGGCGGC
TGAGTTAATGGCGTTCCGTATAACGGCCGGGCTCAGGGCGCGAAACAAAA
TGGGATTGGAGCTATGGCTAAAGTCGCACGCGTCCAACACGAGTTCTCCT
TCGCTCACAATGAGGCTATCGTCGCTACTCCACTCCTCGAAGCTACAAGA
GAATGCCTTGAGTACAGAATCGGAATCAACTTGCAGCGCAAAGTCACCCG
CCAACTCCGCTGGCGCGATGATACTGACATTGATAGCACGTGCGTCTGTA
TCGGCGAAAAATATCACTGCCCCCGACGAGGTATGGTCTCCCACGAATCG
AACGTCGGTGAGGTTGACTTTGCTATTGCTGATATACAACGACCCCCCGG
AGGCGGCTGAGTTA
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