mRNA_H-elongata_contig109878.799.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Match: D8LTT7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTT7_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.170e-55 Identity = 105/189 (55.56%), Postives = 130/189 (68.78%), Query Frame = -2
Query: 53 NSAASGGSLYISNSKVNLTDVRFVGDHTSSGAVIFFADTDARAINVSIIAPAELAGDFALQVDSDSVLKAFSCSFEEWSSDDSLIVSEGELVLDACDFSHSSNPILFRALSPAVIRNAILGDNNYASAGNDASTIFGFDAQTCSDLSEDYSCQSTEHENSCLDAEHGMGVLCTAYIVAATGNNISLTDV 619
NSAASGG++Y+S+S NLTD+R GDHT SGA +FFA DARA+NV+ +AP EL FAL VDS S +AF+C FE WS D +VSEG++VLDACDFS S P L RA IRNA+LGD N+ AG +AS++ G A CS L E+ SC E C+DAE+GMGVLC ++ AATG +L DV
Sbjct: 606 NSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEELEATFALHVDSGSAFRAFACVFEGWSGDSPSVVSEGDMVLDACDFSGSGTPTLVRASRTVTIRNAVLGDQNFGHAGFNASSLLGVGAHGCSSLPEELSCSVPEE---CVDAENGMGVLCPSFTEAATGGLFTLADV 791
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Match: A0A6H5JUJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUJ2_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.010e-54 Identity = 103/189 (54.50%), Postives = 128/189 (67.72%), Query Frame = -2
Query: 53 NSAASGGSLYISNSKVNLTDVRFVGDHTSSGAVIFFADTDARAINVSIIAPAELAGDFALQVDSDSVLKAFSCSFEEWSSDDSLIVSEGELVLDACDFSHSSNPILFRALSPAVIRNAILGDNNYASAGNDASTIFGFDAQTCSDLSEDYSCQSTEHENSCLDAEHGMGVLCTAYIVAATGNNISLTDV 619
NSAASGG++Y+S+S NLTD+R GDHT SGA +FFA DARA+NV+ +AP EL FAL VDS S +AF+C FE W D ++SEGE+VLD CDFS S P L RA IRNA+LGD N+ AG +AS++ G A CS L E+ SC E C+DAE+GMGVLC ++ ATG +SL DV
Sbjct: 608 NSAASGGTIYVSSSVANLTDLRLAGDHTPSGANLFFAGADARAVNVTAVAPEELEATFALHVDSGSAFRAFACVFEGWDGDSPSVLSEGEMVLDVCDFSGSGTPTLVRASRAVTIRNAVLGDQNFGHAGFNASSLLGVGAHGCSSLPEELSCSVAEE---CVDAENGMGVLCPSFTEDATGGLVSLADV 793
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Match: D7G0B0_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B0_ECTSI) HSP 1 Score: 63.2 bits (152), Expect = 4.510e-8 Identity = 59/187 (31.55%), Postives = 90/187 (48.13%), Query Frame = -2
Query: 95 NSAASGGSLYI-SNSKVNLTDVRFVGDHTSSGAVIFFADTDARAINVSIIAPAELAGDF-ALQVDSDSVLKAFSCSFEEWSSDDSLIVSEGELVLDACDFSHSSNPILFRAL--SPAVIRNAILGDNNY------ASAGNDASTIFGFDAQ--TCSDLSEDYSCQSTEHENSCLDAEHGMGVLCTAY 619
NSA +G ++Y N++V L V + + G+V+F ++ ++ E + D A+Q D DS KA SF ++ + +++ SEG L LD CDFS S+ +L + S V+RNA+LGDNNY AS D T + TC S + C+D + +GV C Y
Sbjct: 577 NSALAGPAIYARDNAEVVLRGVELYDNVVARGSVVFIVSSNLTTYQ-TVFTDTEGSSDLSAVQADEDSSYKAEDTSFVGFAGE-AVVFSEGILYLDDCDFSGSAASVLVYSERNSTTVVRNAVLGDNNYFDVAEAASEAGDIPTAHSLISVNVTCDGWMPFSSTPPCSEGSPCIDGD--LGVYCQCY 759
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Match: D7G0A8_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0A8_ECTSI) HSP 1 Score: 61.2 bits (147), Expect = 1.990e-7 Identity = 56/186 (30.11%), Postives = 83/186 (44.62%), Query Frame = -2
Query: 95 NSAASGGSLYI-SNSKVNLTDVRFVGDHTSSGAVIFFADTDARAINVSIIAPAELAGDFALQVDSDSVLKAFSCSFEEWSSDDSLIVSEGELVLDACDFSHSSNPILFRAL--SPAVIRNAILGDNNYASAGNDASTIFGFDAQ--------TCSDLSEDYSCQSTEHENSCLDAEHGMGVLCTAY 619
NSA +G ++Y N++V L V + + G+V+F ++ A A+Q D DS KA SF ++ +++ SEG L LD C+FS S+ +L + S V+RNA+LGDNNY AST TC S + C+D + +GV C Y
Sbjct: 227 NSALAGPAIYARDNAEVVLRGVELCDNVVARGSVVFVVSSNLTTYQTVFTDTAGSPDLSAVQADEDSSYKAEDTSFVGFAGR-AVVFSEGTLYLDECNFSGSTASVLVYSEGDSTTVVRNAVLGDNNYFDVAKAASTANEIPTAHSLINVNVTCDGWMPFSSTSPCSEGSPCIDGD--LGVYCQCY 409
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Match: D7G119_ECTSI (Asn/thr-rich large protein family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G119_ECTSI) HSP 1 Score: 60.8 bits (146), Expect = 2.730e-7 Identity = 60/187 (32.09%), Postives = 93/187 (49.73%), Query Frame = -2
Query: 80 NSAASGGSLYI-SNSKVNLTDVRFVGDHTSSGAVIFFADTDARAINVSIIAPAELAGDFALQVDSDSVLKAFSCSFEEWSSDDSLIVSEGELVLDACDFSHSSNPILFRA-LSPA-VIRNAILGDNNYASAGNDASTIFGFDAQTCSDLSEDYSCQSTEHENSC----LDAEHGMGVLCTAYIVAAT 619
NSA G ++Y N+ V L V + + G+ IF ++ V + +E + A+Q D+ S A F ++ + ++ SEGEL LD CDFS SS+ +L A L A VIRNA+LG NNY + DAS + + S ++ + +C S+ + C E +GV C Y + +T
Sbjct: 451 NSALIGPAIYARDNAVVALRGVEVSDNFVTRGSAIFLVNSTFITSQVVVNDTSENSDLSAVQTDALSTYTAQDTCFVGFAGE-VVVYSEGELYLDECDFSGSSSAVLVYAELEDATVIRNAVLGANNYETIAEDASEMLQLPSAD-SFINLNLTCNSSSAVSPCGVGSWCLEGDLGVYCEHYQLRST 635 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109878.799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig109878.799.1 >prot_H-elongata_contig109878.799.1 ID=prot_H-elongata_contig109878.799.1|Name=mRNA_H-elongata_contig109878.799.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=119bp MAFRITAGLRARNKMGLELWLKSHASNTSSPSLTMRLSSLLHSSKLQENAback to top mRNA from alignment at H-elongata_contig109878:1167..1786+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig109878.799.1 ID=mRNA_H-elongata_contig109878.799.1|Name=mRNA_H-elongata_contig109878.799.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=620bp|location=Sequence derived from alignment at H-elongata_contig109878:1167..1786+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig109878:1167..1786+ >mRNA_H-elongata_contig109878.799.1 ID=mRNA_H-elongata_contig109878.799.1|Name=mRNA_H-elongata_contig109878.799.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=714bp|location=Sequence derived from alignment at H-elongata_contig109878:1167..1786+ (Himanthalia elongata Himel1 dioecious)back to top |