mRNA_H-elongata_contig10986.796.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: D7FXJ9_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ9_ECTSI) HSP 1 Score: 220 bits (560), Expect = 5.960e-61 Identity = 113/239 (47.28%), Postives = 152/239 (63.60%), Query Frame = 3
Query: 6 LCMLNPTPEPGRAWPLLSGDWQAIGEDFVGTTRNADGMQCTLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
L NPT P +AWPL SG+W ++GEDF GTTR DG++CTLGRL FN++ PV+LP+L+ N +G D E + +Y+I++R+ R+ G L GR + G+C DP +P+RVLV F+ G +EP++GQDL AWR VI V D G D GP S L KA L +K+ G + PA LG +GELS+EM RSPKG LD+++LDEEMR+TRGQ+G++VV R
Sbjct: 83 LANFNPTSSPAKAWPLHSGEWASVGEDFKGTTRTKDGVECTLGRLVFNIFEPVNLPVLIVAIKNTIG---------DRPENADPAYESNYVISTRWVARD---GSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKD-------KGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDR 302
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: A0A835ZKX0_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKX0_9STRA) HSP 1 Score: 124 bits (311), Expect = 1.810e-27 Identity = 83/240 (34.58%), Postives = 111/240 (46.25%), Query Frame = 3
Query: 3 ALCMLNPTPEPGRAWPLLSGDWQAIGEDFVGTTRNADGMQCTLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
AL NPT + LL G + G +F R G +CTLGRLAFN++ P LP+ + H N + A G E Y + + F R G L G + G C D R+ V F +G L P GQDLA W V + G + P LG K L +KL +G +PPA +G + M R P+G LD+L+LD+ +R+TRG +GSIVV R
Sbjct: 87 ALSKTNPTTDGALQRELLKGAFATTGFNFPDGKRGPLGWECTLGRLAFNLFEPTKLPVSITHIVNTLEDVPAERQGDRPGE-------LTYDLVNSFVARSPESGVELRGEVAVSGVCWPDSKDANRLRVAFGAGELRPAQGQDLAEWEAVFKPRE-------GKEK----PRVPLGKKLTNLMLKLFMGFQPPAD--AGQGVQRYTMNRPPEGYLDILYLDDALRVTRGNRGSIVVVER 306
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: UPI00146A6814 (fimbrial protein n=1 Tax=Nodosilinea sp. P-1105 TaxID=2546229 RepID=UPI00146A6814) HSP 1 Score: 116 bits (291), Expect = 2.480e-25 Identity = 84/242 (34.71%), Postives = 115/242 (47.52%), Query Frame = 3
Query: 6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADGMQC-TLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATRR 725
L LNPTP P +A L GDW+ I F G ADG TLGRLAFNM++P L L+++ + V A A + D ++ F+T + L GR G C P ++ V F+ GVLEP D W V D P L + L +KL G+ PP A G + F+M RSPKG L++L+LD+++RITRG+KG+I+V R+
Sbjct: 44 LATLNPTPAPAQATDRLEGDWRLISAPSFPGGELLADGCYSYTLGRLAFNMFQPQTLKLVIDQVSQPVWPIADGAHHTH-----------DIVVD--FTTLD--LEVPLQGRVRNLGIC--QPATANQLQVQFTGGVLEPAVDSDRDHWHQVFGDPD-------------ASPRPGLKARLQGLVLKLMFGLVPPKAMAADTGRIEFQMRRSPKGRLEILYLDDDLRITRGEKGTILVCDRQ 255
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: UPI0014073A4C (fimbrial protein n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI0014073A4C) HSP 1 Score: 113 bits (283), Expect = 2.310e-24 Identity = 84/241 (34.85%), Postives = 116/241 (48.13%), Query Frame = 3
Query: 6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADGMQC-TLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
L LNPTP+P + + L G+W+ I F R DG LGRLAFN+++P DL + ++ V G SR D ++T F+T G G L G+ G C +P + V F+ GVLEP D W+ V GD R P S + L ++L G PP A G+ F+M RSPKG L++L+LDEE+RITRG+KG+++V R
Sbjct: 35 LVRLNPTPDPAQRFDLAQGNWRLISAPSFPDGERQEDGTYVYRLGRLAFNLFQPQDLRVQIDEVWQPVFPL-----------GDRSRHSHDIVVT--FTTL-GTAGPPLQGQVRNLGVC--EPQDETHIQVQFTGGVLEPIAQTDRQQWQQVF--------GD-----RTDTPRSSWKERGQGLFLRLMFGFVPPGAMDPQTGKREFQMKRSPKGTLEILYLDEELRITRGEKGTVLVCER 246
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: A0A6H2NGX9_9CYAN (Fimbrial protein n=1 Tax=Leptolyngbya sp. LCM1.Bin17 TaxID=2480211 RepID=A0A6H2NGX9_9CYAN) HSP 1 Score: 113 bits (283), Expect = 2.860e-24 Identity = 86/242 (35.54%), Postives = 118/242 (48.76%), Query Frame = 3
Query: 6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADGMQC-TLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATRR 725
L LNPTP P +A L GDW+ + F G ADG TLGRLAFNM++P D+ L++ + V A + D ++ F+T + L GR G C +P ++ V F+ GVLEP D W V GD RL G +RL G L +KL G+ PP G + F+M RSPKG L VL+LDE++RITRG+KG++++ R+
Sbjct: 44 LVALNPTPAPAQATDRLVGDWRLVSAPSFPGGKPLADGRYSYTLGRLAFNMFQPQDMKLVINQVSQPVWPIADGPQHTH-----------DIVVD--FTTLD--LEVPLQGRVRNLGIC--EPATASQLQVQFTGGVLEPAADSDRDHWHQVF--------GDPDAAPRL-GLTARLQG----LVLKLMFGLVPPTPMAPDTGRIEFQMRRSPKGTLTVLYLDEDLRITRGEKGTVLICDRQ 255
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: A0A6B3N4N3_9CYAN (Fimbrial protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6B3N4N3_9CYAN) HSP 1 Score: 109 bits (273), Expect = 5.410e-23 Identity = 79/242 (32.64%), Postives = 116/242 (47.93%), Query Frame = 3
Query: 6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADG-MQCTLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFST-REGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
L LNPT P R+ LL +W I +F G + DG TLGRLAFNM++P L L+++ V E+++ + I F+T E P T +++ V P ++ V F+ G L P +G ++ W++V + + R + F RL G+ PP A GE+SF M RSPKG L++L+LDEEMRITRG+KG+++V R
Sbjct: 39 LTQLNPTTAPARSETLLDSEWLLINAPNFPGGKQLPDGKFTYTLGRLAFNMFQPTQLKLVIDRVLQPVRLL-------------ENKQQRSHDIVVEFTTIDESFPKLT----GIVHNQGVCHPISDTKLQVKFTGGTLAPQEGTNIKDWQEVFGKQRQ--SSQKSWQERFISGFFRL-----------MFGLVPPQAMNPDTGEVSFTMNRSPKGSLEILYLDEEMRITRGEKGTLLVCQR 250
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: R1FF86_EMIHU (PAP_fibrillin domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FF86_EMIHU) HSP 1 Score: 107 bits (268), Expect = 3.130e-22 Identity = 86/243 (35.39%), Postives = 128/243 (52.67%), Query Frame = 3
Query: 3 ALCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADG-MQCTLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFST-REGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
AL L P P R LL G WQ I ++ G TR+A G Q TLGRL+F +++P DL + N + +A GG +Y I FS R+ GP +LS + + +C + D R+ V FS GV+ P +G D AWR+V A LV + P R+ + + ++ +G+ P+ +LG +S++MT++PKG LDVL+LD+E+RITRG +GS+V+ R
Sbjct: 51 ALSSLCPFEAPTRESALL-GKWQQINAPEYSGGTRDASGAFQYTLGRLSFGIFQPKDLMCTLGPILNPLKESAV---------GG----VIEYEIEIPFSIGRDNGP--SLSAEIINFATCAVETDT--RLSVSFSGGVMRPAEGCDRPAWREVFGPA---------LVAK---PGKRV--RVMNWLLRRLMGLIKPS-QLGDDDAMSYQMTKAPKGHLDVLYLDDELRITRGNRGSLVICER 260
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: A0A1Z3HQV7_9CYAN (Uncharacterized protein n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HQV7_9CYAN) HSP 1 Score: 106 bits (265), Expect = 6.820e-22 Identity = 83/241 (34.44%), Postives = 115/241 (47.72%), Query Frame = 3
Query: 6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADGMQC-TLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
L LNPTP P + LL G+ + I F + DG C +LGRLAF+M++P +L L++ N V P G ++ D ++ F+TR+ L G G C D RV WF+ GVLEP G DL+ W V D+ L G F +KL G+ PPA + G + F+M RSPKG L +L+LDEE+RITRG K ++++ R
Sbjct: 41 LAALNPTPAPTQTPDLLEGELRLISAPSFPDGQKLDDGSYCYSLGRLAFDMFQPRNLRLVI----NQVWQPVWPIQGGP-------QRSHDIVVD--FTTRQDNEP-PLRGIVRNLGGCEPANDTALRV--WFTGGVLEPAPGTDLSQWNTVFG--DQTQPAPDSLKSWFQGLF-----------LKLMFGLVPPAGIDPNTGRVEFQMKRSPKGSLTILYLDEELRITRGHKETVLICDR 252
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: UPI0019F0B3D6 (Fimbrial protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI0019F0B3D6) HSP 1 Score: 105 bits (263), Expect = 1.120e-21 Identity = 81/244 (33.20%), Postives = 115/244 (47.13%), Query Frame = 3
Query: 6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADG-MQCTLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVL-VWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGM-KLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATRR 725
LC LNPT P + LL +W I DF + DG TLGRLAFNM++PV+L ++++ P + EE K I+ + E P L G G C + RVL V F+ G+L P D + W+ V DR P + + G+ +L G+ PP + GE+SF M RSPKG L +L+LDEE+RITRG+KG++++ R+
Sbjct: 38 LCSLNPTAAPTHSGSLLESEWLLISAPDFPQGEKRQDGKFVYTLGRLAFNMFQPVNLKIVIDRVLQ-------PVLPLEEEE-----KLTHDIVVEFTTVDEHLP--QLKGIVRNLGVC---QPISDRVLQVKFTGGILVPQDLNQIEEWKTVFGKQDR--------------PSKVSWQEKLKFGLFRLLFGLVPPQSMNPKTGEVSFTMQRSPKGKLAILYLDEELRITRGEKGTVLICERQ 250
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: UPI00168986C2 (Fimbrial protein n=3 Tax=Pseudanabaenales TaxID=2881377 RepID=UPI00168986C2) HSP 1 Score: 104 bits (260), Expect = 3.130e-21 Identity = 78/242 (32.23%), Postives = 108/242 (44.63%), Query Frame = 3
Query: 6 LCMLNPTPEPGRAWPLLSGDWQAIGED-FVGTTRNADGMQC-TLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATRR 725
L LNPTP P + LL G+WQ I F R ADG C TLGRLAFNM++P DL ++++ V P + D++I + G R L + P + V F+ GVLEP DL W + + S + + +KL G+ PP G + F+M RSPKG L +L+LDEE+RITRGQ+ +++V RR
Sbjct: 43 LATLNPTPVPTQTSQLLDGNWQLISAPIFPDGKRLADGTYCYTLGRLAFNMFQPQDLTVVIQQVFQPVLPMEEPMQRTHDI-------VVDFVIAHPNNPSLRGTVRNLG---------ICKPASDTVLQVQFTGGVLEPAADTDLQQWNAIFENSK-------------APTHSSIKDWVQSQLLKLMFGLVPPKEINKETGRIEFQMRRSPKGSLTILYLDEELRITRGQRETVLVCERR 255 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10986.796.1 >prot_H-elongata_contig10986.796.1 ID=prot_H-elongata_contig10986.796.1|Name=mRNA_H-elongata_contig10986.796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=240bp MLNPTPEPGRAWPLLSGDWQAIGEDFVGTTRNADGMQCTLGRLAFNMYRPback to top mRNA from alignment at H-elongata_contig10986:2679..6226+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10986.796.1 ID=mRNA_H-elongata_contig10986.796.1|Name=mRNA_H-elongata_contig10986.796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3548bp|location=Sequence derived from alignment at H-elongata_contig10986:2679..6226+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10986:2679..6226+ >mRNA_H-elongata_contig10986.796.1 ID=mRNA_H-elongata_contig10986.796.1|Name=mRNA_H-elongata_contig10986.796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at H-elongata_contig10986:2679..6226+ (Himanthalia elongata Himel1 dioecious)back to top |