mRNA_H-elongata_contig10986.796.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10986.796.1
Unique NamemRNA_H-elongata_contig10986.796.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: D7FXJ9_ECTSI (PAP_fibrillin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXJ9_ECTSI)

HSP 1 Score: 220 bits (560), Expect = 5.960e-61
Identity = 113/239 (47.28%), Postives = 152/239 (63.60%), Query Frame = 3
Query:    6 LCMLNPTPEPGRAWPLLSGDWQAIGEDFVGTTRNADGMQCTLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
            L   NPT  P +AWPL SG+W ++GEDF GTTR  DG++CTLGRL FN++ PV+LP+L+    N +G         D  E  +     +Y+I++R+  R+   G  L GR  + G+C  DP +P+RVLV F+ G +EP++GQDL AWR VI V D  G  D        GP S L  KA  L +K+  G + PA  LG +GELS+EM RSPKG LD+++LDEEMR+TRGQ+G++VV  R
Sbjct:   83 LANFNPTSSPAKAWPLHSGEWASVGEDFKGTTRTKDGVECTLGRLVFNIFEPVNLPVLIVAIKNTIG---------DRPENADPAYESNYVISTRWVARD---GSGLRGRVEISGTCWEDPSMPERVLVRFTKGSIEPDEGQDLDAWRKVIGVRDVEGTKD-------KGPLSTLKEKAARLMLKVVFGFQGPADGLGPRGELSYEMKRSPKGYLDIIYLDEEMRVTRGQQGALVVVDR 302          
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: A0A835ZKX0_9STRA (PAP_fibrillin domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKX0_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.810e-27
Identity = 83/240 (34.58%), Postives = 111/240 (46.25%), Query Frame = 3
Query:    3 ALCMLNPTPEPGRAWPLLSGDWQAIGEDFVGTTRNADGMQCTLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
            AL   NPT +      LL G +   G +F    R   G +CTLGRLAFN++ P  LP+ + H  N +    A   G    E         Y + + F  R    G  L G   + G C  D     R+ V F +G L P  GQDLA W  V    +       G  +    P   LG K   L +KL +G +PPA     +G   + M R P+G LD+L+LD+ +R+TRG +GSIVV  R
Sbjct:   87 ALSKTNPTTDGALQRELLKGAFATTGFNFPDGKRGPLGWECTLGRLAFNLFEPTKLPVSITHIVNTLEDVPAERQGDRPGE-------LTYDLVNSFVARSPESGVELRGEVAVSGVCWPDSKDANRLRVAFGAGELRPAQGQDLAEWEAVFKPRE-------GKEK----PRVPLGKKLTNLMLKLFMGFQPPAD--AGQGVQRYTMNRPPEGYLDILYLDDALRVTRGNRGSIVVVER 306          
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: UPI00146A6814 (fimbrial protein n=1 Tax=Nodosilinea sp. P-1105 TaxID=2546229 RepID=UPI00146A6814)

HSP 1 Score: 116 bits (291), Expect = 2.480e-25
Identity = 84/242 (34.71%), Postives = 115/242 (47.52%), Query Frame = 3
Query:    6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADGMQC-TLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATRR 725
            L  LNPTP P +A   L GDW+ I    F G    ADG    TLGRLAFNM++P  L L+++  +  V   A  A  +            D ++   F+T +      L GR    G C   P    ++ V F+ GVLEP    D   W  V    D               P   L  +   L +KL  G+ PP A     G + F+M RSPKG L++L+LD+++RITRG+KG+I+V  R+
Sbjct:   44 LATLNPTPAPAQATDRLEGDWRLISAPSFPGGELLADGCYSYTLGRLAFNMFQPQTLKLVIDQVSQPVWPIADGAHHTH-----------DIVVD--FTTLD--LEVPLQGRVRNLGIC--QPATANQLQVQFTGGVLEPAVDSDRDHWHQVFGDPD-------------ASPRPGLKARLQGLVLKLMFGLVPPKAMAADTGRIEFQMRRSPKGRLEILYLDDDLRITRGEKGTILVCDRQ 255          
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: UPI0014073A4C (fimbrial protein n=1 Tax=Aphanocapsa montana TaxID=327565 RepID=UPI0014073A4C)

HSP 1 Score: 113 bits (283), Expect = 2.310e-24
Identity = 84/241 (34.85%), Postives = 116/241 (48.13%), Query Frame = 3
Query:    6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADGMQC-TLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
            L  LNPTP+P + + L  G+W+ I    F    R  DG     LGRLAFN+++P DL + ++     V              G  SR   D ++T  F+T  G  G  L G+    G C  +P     + V F+ GVLEP    D   W+ V         GD     R   P S    +   L ++L  G  PP A     G+  F+M RSPKG L++L+LDEE+RITRG+KG+++V  R
Sbjct:   35 LVRLNPTPDPAQRFDLAQGNWRLISAPSFPDGERQEDGTYVYRLGRLAFNLFQPQDLRVQIDEVWQPVFPL-----------GDRSRHSHDIVVT--FTTL-GTAGPPLQGQVRNLGVC--EPQDETHIQVQFTGGVLEPIAQTDRQQWQQVF--------GD-----RTDTPRSSWKERGQGLFLRLMFGFVPPGAMDPQTGKREFQMKRSPKGTLEILYLDEELRITRGEKGTVLVCER 246          
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: A0A6H2NGX9_9CYAN (Fimbrial protein n=1 Tax=Leptolyngbya sp. LCM1.Bin17 TaxID=2480211 RepID=A0A6H2NGX9_9CYAN)

HSP 1 Score: 113 bits (283), Expect = 2.860e-24
Identity = 86/242 (35.54%), Postives = 118/242 (48.76%), Query Frame = 3
Query:    6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADGMQC-TLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATRR 725
            L  LNPTP P +A   L GDW+ +    F G    ADG    TLGRLAFNM++P D+ L++   +  V   A     +            D ++   F+T +      L GR    G C  +P    ++ V F+ GVLEP    D   W  V         GD     RL G  +RL G    L +KL  G+ PP       G + F+M RSPKG L VL+LDE++RITRG+KG++++  R+
Sbjct:   44 LVALNPTPAPAQATDRLVGDWRLVSAPSFPGGKPLADGRYSYTLGRLAFNMFQPQDMKLVINQVSQPVWPIADGPQHTH-----------DIVVD--FTTLD--LEVPLQGRVRNLGIC--EPATASQLQVQFTGGVLEPAADSDRDHWHQVF--------GDPDAAPRL-GLTARLQG----LVLKLMFGLVPPTPMAPDTGRIEFQMRRSPKGTLTVLYLDEDLRITRGEKGTVLICDRQ 255          
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: A0A6B3N4N3_9CYAN (Fimbrial protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=A0A6B3N4N3_9CYAN)

HSP 1 Score: 109 bits (273), Expect = 5.410e-23
Identity = 79/242 (32.64%), Postives = 116/242 (47.93%), Query Frame = 3
Query:    6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADG-MQCTLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFST-REGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
            L  LNPT  P R+  LL  +W  I   +F G  +  DG    TLGRLAFNM++P  L L+++     V                E+++   + I   F+T  E  P  T     +++   V  P    ++ V F+ G L P +G ++  W++V     +  +       R +  F RL             G+ PP A     GE+SF M RSPKG L++L+LDEEMRITRG+KG+++V  R
Sbjct:   39 LTQLNPTTAPARSETLLDSEWLLINAPNFPGGKQLPDGKFTYTLGRLAFNMFQPTQLKLVIDRVLQPVRLL-------------ENKQQRSHDIVVEFTTIDESFPKLT----GIVHNQGVCHPISDTKLQVKFTGGTLAPQEGTNIKDWQEVFGKQRQ--SSQKSWQERFISGFFRL-----------MFGLVPPQAMNPDTGEVSFTMNRSPKGSLEILYLDEEMRITRGEKGTLLVCQR 250          
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: R1FF86_EMIHU (PAP_fibrillin domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FF86_EMIHU)

HSP 1 Score: 107 bits (268), Expect = 3.130e-22
Identity = 86/243 (35.39%), Postives = 128/243 (52.67%), Query Frame = 3
Query:    3 ALCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADG-MQCTLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFST-REGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
            AL  L P   P R   LL G WQ I   ++ G TR+A G  Q TLGRL+F +++P DL   +    N +  +A          GG      +Y I   FS  R+ GP  +LS   + + +C  + D   R+ V FS GV+ P +G D  AWR+V   A         LV +   P  R+  + +   ++  +G+  P+ +LG    +S++MT++PKG LDVL+LD+E+RITRG +GS+V+  R
Sbjct:   51 ALSSLCPFEAPTRESALL-GKWQQINAPEYSGGTRDASGAFQYTLGRLSFGIFQPKDLMCTLGPILNPLKESAV---------GG----VIEYEIEIPFSIGRDNGP--SLSAEIINFATCAVETDT--RLSVSFSGGVMRPAEGCDRPAWREVFGPA---------LVAK---PGKRV--RVMNWLLRRLMGLIKPS-QLGDDDAMSYQMTKAPKGHLDVLYLDDELRITRGNRGSLVICER 260          
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: A0A1Z3HQV7_9CYAN (Uncharacterized protein n=1 Tax=Halomicronema hongdechloris C2206 TaxID=1641165 RepID=A0A1Z3HQV7_9CYAN)

HSP 1 Score: 106 bits (265), Expect = 6.820e-22
Identity = 83/241 (34.44%), Postives = 115/241 (47.72%), Query Frame = 3
Query:    6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADGMQC-TLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATR 722
            L  LNPTP P +   LL G+ + I    F    +  DG  C +LGRLAF+M++P +L L++    N V     P  G         ++  D ++   F+TR+      L G     G C    D   RV  WF+ GVLEP  G DL+ W  V    D+       L     G F           +KL  G+ PPA    + G + F+M RSPKG L +L+LDEE+RITRG K ++++  R
Sbjct:   41 LAALNPTPAPTQTPDLLEGELRLISAPSFPDGQKLDDGSYCYSLGRLAFDMFQPRNLRLVI----NQVWQPVWPIQGGP-------QRSHDIVVD--FTTRQDNEP-PLRGIVRNLGGCEPANDTALRV--WFTGGVLEPAPGTDLSQWNTVFG--DQTQPAPDSLKSWFQGLF-----------LKLMFGLVPPAGIDPNTGRVEFQMKRSPKGSLTILYLDEELRITRGHKETVLICDR 252          
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: UPI0019F0B3D6 (Fimbrial protein n=1 Tax=Pleurocapsales cyanobacterium LEGE 06147 TaxID=1828827 RepID=UPI0019F0B3D6)

HSP 1 Score: 105 bits (263), Expect = 1.120e-21
Identity = 81/244 (33.20%), Postives = 115/244 (47.13%), Query Frame = 3
Query:    6 LCMLNPTPEPGRAWPLLSGDWQAIGE-DFVGTTRNADG-MQCTLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVL-VWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGM-KLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATRR 725
            LC LNPT  P  +  LL  +W  I   DF    +  DG    TLGRLAFNM++PV+L ++++           P    + EE     K    I+    +  E  P   L G     G C     +  RVL V F+ G+L P D   +  W+ V    DR              P      + +  G+ +L  G+ PP +     GE+SF M RSPKG L +L+LDEE+RITRG+KG++++  R+
Sbjct:   38 LCSLNPTAAPTHSGSLLESEWLLISAPDFPQGEKRQDGKFVYTLGRLAFNMFQPVNLKIVIDRVLQ-------PVLPLEEEE-----KLTHDIVVEFTTVDEHLP--QLKGIVRNLGVC---QPISDRVLQVKFTGGILVPQDLNQIEEWKTVFGKQDR--------------PSKVSWQEKLKFGLFRLLFGLVPPQSMNPKTGEVSFTMQRSPKGKLAILYLDEELRITRGEKGTVLICERQ 250          
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Match: UPI00168986C2 (Fimbrial protein n=3 Tax=Pseudanabaenales TaxID=2881377 RepID=UPI00168986C2)

HSP 1 Score: 104 bits (260), Expect = 3.130e-21
Identity = 78/242 (32.23%), Postives = 108/242 (44.63%), Query Frame = 3
Query:    6 LCMLNPTPEPGRAWPLLSGDWQAIGED-FVGTTRNADGMQC-TLGRLAFNMYRPVDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGGPGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVINVADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGELSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATRR 725
            L  LNPTP P +   LL G+WQ I    F    R ADG  C TLGRLAFNM++P DL ++++     V     P   +            D++I    +    G  R L          +  P     + V F+ GVLEP    DL  W  +   +                  S +     +  +KL  G+ PP       G + F+M RSPKG L +L+LDEE+RITRGQ+ +++V  RR
Sbjct:   43 LATLNPTPVPTQTSQLLDGNWQLISAPIFPDGKRLADGTYCYTLGRLAFNMFQPQDLTVVIQQVFQPVLPMEEPMQRTHDI-------VVDFVIAHPNNPSLRGTVRNLG---------ICKPASDTVLQVQFTGGVLEPAADTDLQQWNAIFENSK-------------APTHSSIKDWVQSQLLKLMFGLVPPKEINKETGRIEFQMRRSPKGSLTILYLDEELRITRGQRETVLVCERR 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10986.796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXJ9_ECTSI5.960e-6147.28PAP_fibrillin domain-containing protein n=2 Tax=Ec... [more]
A0A835ZKX0_9STRA1.810e-2734.58PAP_fibrillin domain-containing protein n=1 Tax=Tr... [more]
UPI00146A68142.480e-2534.71fimbrial protein n=1 Tax=Nodosilinea sp. P-1105 Ta... [more]
UPI0014073A4C2.310e-2434.85fimbrial protein n=1 Tax=Aphanocapsa montana TaxID... [more]
A0A6H2NGX9_9CYAN2.860e-2435.54Fimbrial protein n=1 Tax=Leptolyngbya sp. LCM1.Bin... [more]
A0A6B3N4N3_9CYAN5.410e-2332.64Fimbrial protein n=4 Tax=Cyanobacteria TaxID=1117 ... [more]
R1FF86_EMIHU3.130e-2235.39PAP_fibrillin domain-containing protein n=1 Tax=Em... [more]
A0A1Z3HQV7_9CYAN6.820e-2234.44Uncharacterized protein n=1 Tax=Halomicronema hong... [more]
UPI0019F0B3D61.120e-2133.20Fimbrial protein n=1 Tax=Pleurocapsales cyanobacte... [more]
UPI00168986C23.130e-2132.23Fimbrial protein n=3 Tax=Pseudanabaenales TaxID=28... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10986contigH-elongata_contig10986:2679..6226 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue7.4e-55
Seed eggNOG ortholog2880.D7FXJ9
EggNOG free text desc.PAP_fibrillin
EggNOG OGs28N1U@1,2S7IC@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size3048
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10986.796.1prot_H-elongata_contig10986.796.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10986 2690..3909 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.2925897-UTR-H-elongata_contig10986:2678..26891622929625.2925897-UTR-H-elongata_contig10986:2678..2689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10986 2679..2689 +
1691679096.2751691-UTR-H-elongata_contig10986:2678..26891691679096.2751691-UTR-H-elongata_contig10986:2678..2689Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10986 2679..2689 +
1622929625.3503416-UTR-H-elongata_contig10986:3909..62261622929625.3503416-UTR-H-elongata_contig10986:3909..6226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10986 3910..6226 +
1691679096.2991207-UTR-H-elongata_contig10986:3909..62261691679096.2991207-UTR-H-elongata_contig10986:3909..6226Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10986 3910..6226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929625.314292-CDS-H-elongata_contig10986:2689..27561622929625.314292-CDS-H-elongata_contig10986:2689..2756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10986 2690..2756 +
1691679096.2841704-CDS-H-elongata_contig10986:2689..27561691679096.2841704-CDS-H-elongata_contig10986:2689..2756Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10986 2690..2756 +
1622929625.3342378-CDS-H-elongata_contig10986:3256..39091622929625.3342378-CDS-H-elongata_contig10986:3256..3909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10986 3257..3909 +
1691679096.2916927-CDS-H-elongata_contig10986:3256..39091691679096.2916927-CDS-H-elongata_contig10986:3256..3909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10986 3257..3909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10986.796.1

>prot_H-elongata_contig10986.796.1 ID=prot_H-elongata_contig10986.796.1|Name=mRNA_H-elongata_contig10986.796.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=240bp
MLNPTPEPGRAWPLLSGDWQAIGEDFVGTTRNADGMQCTLGRLAFNMYRP
VDLPLLVEHTTNLVGSAAAPASGSDAEEGGESRKFPDYIITSRFSTREGG
PGRTLSGRSVLYGSCVSDPDLPQRVLVWFSSGVLEPNDGQDLAAWRDVIN
VADRGGNGDGGLVRRLVGPFSRLGGKAVALGMKLALGIKPPAAELGSKGE
LSFEMTRSPKGLLDVLFLDEEMRITRGQKGSIVVATRRL*
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mRNA from alignment at H-elongata_contig10986:2679..6226+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10986.796.1 ID=mRNA_H-elongata_contig10986.796.1|Name=mRNA_H-elongata_contig10986.796.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3548bp|location=Sequence derived from alignment at H-elongata_contig10986:2679..6226+ (Himanthalia elongata Himel1 dioecious)
AGGCGCTGTGCATGCTCAACCCCACCCCGGAGCCCGGCAGGGCTTGGCCT CTTCTGAGCGGAGATTGGCAGGCCATCGGTAAGCACTTGCAGCAACATAA TTCCTGCATCGGACCAAAACGGCTTGCGCGATTTGTAGACCCTGCAGGCA TACTCTCGCGCAGACAGACAGGGGGTGATCGCTGTGTGACTCGGGACATC CGCCTCTCGCTTCTTCCTCTAGTGAATGAGATTAATTCTTCAGGCACTAA GCTGAGCAAACATTTAGTTTGGGTTGGTGCATATTATTTGGGCCGCTGCA GCACCATATTGCGCTGGGCTAAAAACCGTGCTTCTCACCGACGCTAGCTC ACCCTTGAAACCAACAGACATCAATCTTCGTACCTACGGTACTATATTGG TATAATGTTGCGCAGTTTGTTTACACCGAGAGTTGTAACACCGGAGAATT TACATGTACCTGGATATGATATGACTCTCTCCCCGTCTCGTCCCGTGGTG TCCCATGGGATCTCATCCATGCCGCGTACCCTTGGTCCGTATCTCCCCCC CCCGCCCAATCTCTCCAAAACACAAAAGGGGAAGATTTTGTGGGCACTAC ACGCAACGCCGATGGCATGCAGTGCACTCTCGGGCGCCTGGCGTTCAACA TGTACCGGCCCGTCGACCTGCCTTTGCTGGTGGAACATACGACCAACCTC GTCGGCTCAGCGGCAGCGCCGGCCTCGGGCAGTGACGCCGAAGAAGGGGG AGAGAGTAGAAAATTTCCCGACTACATTATCACCAGTCGATTCTCTACAC GCGAAGGCGGACCAGGGCGGACGCTAAGTGGAAGGTCAGTGCTGTACGGG TCGTGCGTGTCGGACCCGGACCTTCCTCAGCGGGTCCTGGTCTGGTTCTC ATCCGGTGTCTTGGAGCCGAACGACGGTCAGGACCTCGCCGCGTGGCGTG ATGTGATCAACGTCGCGGACAGGGGCGGGAACGGCGACGGCGGTCTCGTG AGACGGCTTGTGGGACCATTCTCTCGACTCGGGGGAAAGGCGGTCGCGCT CGGGATGAAGCTGGCGTTGGGGATCAAGCCTCCGGCCGCTGAACTTGGCA GCAAGGGAGAGCTGTCGTTCGAGATGACCCGCAGCCCGAAGGGCCTGTTG GACGTGCTCTTCCTGGACGAGGAGATGAGGATCACGCGGGGACAAAAGGG GTCGATCGTTGTGGCCACCCGCCGCCTCTAAAACGATGAATATCCCTCGC TAAAACCACCACCGCCCTTGGGGGCTTCGTAATTACAAATAATCAGGGCT GCTCACATGACCGGCAATTACACATAAATTTTCACATGACCAGTGCCGGA ACCGGTTTTCGGTTCTGTCCTGTGAGATTTATTTTTCTCAAAACCGGCAC TGGTTCGGCACTATGCGATTTTTTCTCGGCACTGGTTCGGCACTGTGAGA GTTTTGCTCGGCAATGGTTCGGCAATGTAAGATTTTTTATTCTCAAAGCT GGCACTGTGTCGGCACTGTGTGTTTTTTTTCTGGCACTGATTGGGTACTG TGAGCATTCTCTGGTCATGTGAGCAGCCCTGAAAATTTTCGTTATTTGTT ATTTTGTATTTGTTATTTCGGCCGGTGAACAATTATTATGCTGTCCTGCA AGCTGCCGTGCCTCTTGGTTTTGGCGGAAAAAAAAAAGAGACCCCACAAC CGCTTTCACACCACGAAGTATGTAATACCGAAACCCACTTGTTCTGCTGT GTTCTTTTTTTTTGTCTGGAAAATGTCAAATGTACTGGAAGTATTTTGTA TTTTTAGGATTCGCGGCTGGCTGCGGTGCCTCTTGGCTTGAGCGAAAAAC AATTAACTTACGACTGTTCTCCCGCCACAAAACACACACCGAAGCCCGTT TGTTCTGCTTTTTTCGTTACGTATTTGGGGTTTTTATCTTCAAAATGCAT CGCTTCCTTTCAAATCGTCATGCCCACTCTTCCCATACAGTAGTGGATGT GAGGAAAAAGAGGGGTACAATACTCATGGTGCTAAGAAGAAGTGGATGTT CGGAGGGTTGGAATGAGTTCAAGGTTTTTTAAAATGAAAATAATTGGTCC ATGGGGTTACCTGAATAGGCTTCACCCGTTACTTGAGCTACCTTGAGGAC TGCTGGCTCAGTGCCGGCGGACTCTCGGTGGTAAGCACCATCGGTACGCA ATTTCGTGGCCTGATGTAATCGGGATTGACCCGATCGTGGTTGACGGTAG AGATGGACGCCGTCGTCGCGGAAAACGGGAGGATCGAGAGGATTCCGGGA GTAAGCACCAGATTTCGCCTGGGTTGGGAGAATGAGCAGGCTGACGCGGA ACGGGACTGCTGAACCCGTCTCGCGAGACCAAAGTCTCAGGCGCCAATGG GGACAGGGGAAAATGTTTTTTCTTGTTCAGCTGACCACGAGAAGAAGGCA ACCGAATCCAGTTGATCTTCTGCTAAATGGTACTATATATATATTCGGAA ACATTGTTTGGTATTTAGGTGCATTACTACTGTAGGGTATGCGGAGAGCA AACGCTTTGGTCTCTTGGTGACGTGCGCCGCATTCTCCCGCCACGCCGCG GGAGCCGAGACGGTGATTGAGACTGCCTAGGACGTGCGACCGTTAAGCTA TGAACGCGTCGAGAGGCGAGGCTGGAACCGGGGGTTGGCGCAATGATGTA CACGTCGGCACATGTTCCTTCGAATGGTGCGATCGTTCGATTCTTCGTGG GGTTGTTCTCGGGATTGCTTGTTGATAAACGACGAAACAGTGGGTAGAAT GGCGCATGCTGTTTATTTTTGAACGAGGGCTGCGTGCTCTTCGAATCCCT CGCATGTAGAAGATTGTACGCTAGGCCCACCTTTTTCAATTGCACAGGGT TGGCTTGTTGGTGTTTACCATGATAGGGGAGGTAGCAGATTCATCGAATC GTAATATTACAGTATTGCACGCTATGTATACTCGTATTTAGATTTACCAT TTGTATCGCTGCATGATACATTGAACGCTTAGGATGGACCCCATTGTCCG TTAAAGTAATTGATAGAATGATTGCAGCAGTGAGGTGCAAATGCCGAAGT TCGTGGTTTCTGCCTTTCAAGCATATGCCCGTCAGATCTCAATTAAATCC CACATGTCCACCCCCACGACCATTTCACAGTGCCCGAGCCGGGTTCAGCT TCGGCGCTGTAAGAGCTCATTTTACACACATGTCCGCTTCACGGTGCCGG TTTTGAGGTTGGCACTGTGAGATTTTTCGTTTCCAAAACCGGTACTGATT TGGCATTGTGAGAGTTTTCGTCTCCAAAACCGGTACTGGTTTGGCACTGT TAGATTTTTGCCGGTACTGGTTCGGCACTGTGAGGTTTTTCGGCTCCAAA CCGGTACTGGTTCGGCACTGTGAGATTTTTTTCTCAAAACCGGCACTGTG TCGGCACTGTATGGTTTTTGTCCGGCACTGGTTGGGTACTGTGAGCATTC TCTGGTCACGTGAGCAGCCCTGGAAATAATAGAACTAGGTACCGATGC
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Coding sequence (CDS) from alignment at H-elongata_contig10986:2679..6226+

>mRNA_H-elongata_contig10986.796.1 ID=mRNA_H-elongata_contig10986.796.1|Name=mRNA_H-elongata_contig10986.796.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1440bp|location=Sequence derived from alignment at H-elongata_contig10986:2679..6226+ (Himanthalia elongata Himel1 dioecious)
ATGCTCAACCCCACCCCGGAGCCCGGCAGGGCTTGGCCTCTTCTGAGCGG
AGATTGGCAGGCCATCGATGCTCAACCCCACCCCGGAGCCCGGCAGGGCT
TGGCCTCTTCTGAGCGGAGATTGGCAGGCCATCGGGGAAGATTTTGTGGG
CACTACACGCAACGCCGATGGCATGCAGTGCACTCTCGGGCGCCTGGCGT
TCAACATGTACCGGCCCGTCGACCTGCCTTTGCTGGTGGAACATACGACC
AACCTCGTCGGCTCAGCGGCAGCGCCGGCCTCGGGCAGTGACGCCGAAGA
AGGGGGAGAGAGTAGAAAATTTCCCGACTACATTATCACCAGTCGATTCT
CTACACGCGAAGGCGGACCAGGGCGGACGCTAAGTGGAAGGTCAGTGCTG
TACGGGTCGTGCGTGTCGGACCCGGACCTTCCTCAGCGGGTCCTGGTCTG
GTTCTCATCCGGTGTCTTGGAGCCGAACGACGGTCAGGACCTCGCCGCGT
GGCGTGATGTGATCAACGTCGCGGACAGGGGCGGGAACGGCGACGGCGGT
CTCGTGAGACGGCTTGTGGGACCATTCTCTCGACTCGGGGGAAAGGCGGT
CGCGCTCGGGATGAAGCTGGCGTTGGGGATCAAGCCTCCGGCCGCTGAAC
TTGGCAGCAAGGGAGAGCTGTCGTTCGAGATGACCCGCAGCCCGAAGGGC
CTGTTGGACGTGCTCTTCCTGGACGAGGAGATGAGGATCACGCGGGGACA
AAAGGGGTCGATCGTTGTGGCCACCCGCCGCCTCTAAGGGAAGATTTTGT
GGGCACTACACGCAACGCCGATGGCATGCAGTGCACTCTCGGGCGCCTGG
CGTTCAACATGTACCGGCCCGTCGACCTGCCTTTGCTGGTGGAACATACG
ACCAACCTCGTCGGCTCAGCGGCAGCGCCGGCCTCGGGCAGTGACGCCGA
AGAAGGGGGAGAGAGTAGAAAATTTCCCGACTACATTATCACCAGTCGAT
TCTCTACACGCGAAGGCGGACCAGGGCGGACGCTAAGTGGAAGGTCAGTG
CTGTACGGGTCGTGCGTGTCGGACCCGGACCTTCCTCAGCGGGTCCTGGT
CTGGTTCTCATCCGGTGTCTTGGAGCCGAACGACGGTCAGGACCTCGCCG
CGTGGCGTGATGTGATCAACGTCGCGGACAGGGGCGGGAACGGCGACGGC
GGTCTCGTGAGACGGCTTGTGGGACCATTCTCTCGACTCGGGGGAAAGGC
GGTCGCGCTCGGGATGAAGCTGGCGTTGGGGATCAAGCCTCCGGCCGCTG
AACTTGGCAGCAAGGGAGAGCTGTCGTTCGAGATGACCCGCAGCCCGAAG
GGCCTGTTGGACGTGCTCTTCCTGGACGAGGAGATGAGGATCACGCGGGG
ACAAAAGGGGTCGATCGTTGTGGCCACCCGCCGCCTCTAA
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