mRNA_H-elongata_contig10982.792.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10982.792.1
Unique NamemRNA_H-elongata_contig10982.792.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: D8LEW1_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI)

HSP 1 Score: 399 bits (1026), Expect = 6.970e-129
Identity = 191/231 (82.68%), Postives = 207/231 (89.61%), Query Frame = 3
Query:    6 IRGRAGPATPRPVYDDSRPLDRFLLGIFRSKVAAEIGGD--AYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGALRSGTN--IVRCHQIDV 686
            IRGRAGP    P YDD+RPLDR LLG+FRSK+A E+GGD  A+ PGYDGLMDMI+VLNEKF SKR+TQE SRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTL+ASQWLMGPS+LND+EID G++GVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFF KDMGLALEMTPNYEDFSCQFSFNKTPL R MD++FRVACFEQCPS GALR      + RCHQID+
Sbjct:   82 IRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDI 312          
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A835ZDY9_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA)

HSP 1 Score: 283 bits (724), Expect = 4.710e-86
Identity = 131/205 (63.90%), Postives = 164/205 (80.00%), Query Frame = 3
Query:   72 FLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEK--FRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGALRSGTNIVRCHQI 680
             LLG+FR K+AAE+  D   PGY GL++MIR LN+   + +  +TQ+ +R+VL+SLFP WLP +FAVMFSKPFP FS R+NAWVTL+ASQWLMGPS++NDVEIDGG +GVGHGLLV+RCR+LE AGCASVC+NTCK+PT+EFFMKDMGL L+MTP+Y+DFSCQFSF K PL    D+ F VACFEQCP+  + +       CH++
Sbjct:    1 MLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKR-----LCHKV 200          
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: I0YX40_COCSC (D27-like_C domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC)

HSP 1 Score: 276 bits (706), Expect = 4.320e-83
Identity = 129/226 (57.08%), Postives = 164/226 (72.57%), Query Frame = 3
Query:   15 RAGPATPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGALRSGTNIVRCHQIDV 686
            +AGP TP P Y+  DS+PL+R ++ +FR K+ A IG ++   GYD ++D+ R+LN K  + R+TQ  +R++L SLFPSWLP +F VMFSKP P  S +LNAWVT++  QWLMGP ++NDVE+DGG IG G G+LVERCR+LE  GCASVC+N+CK+PT+EFF KDMGL L MTPNYEDFSCQFSF  TP P  +D++F   CF QCPS    R      RC   DV
Sbjct:    7 KAGPETPAPSYESIDSQPLNRAIMSLFRQKMVAAIGKNSDKEGYDAIVDLTRLLNSKSSNPRDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVELDGGRIGSGQGVLVERCRYLEETGCASVCLNSCKIPTQEFFAKDMGLPLTMTPNYEDFSCQFSFGLTPKPAAIDEAFATPCFSQCPSKQRHRGD----RCPGADV 228          
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A7J7QQS2_9CHLO (D27-like_C domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQS2_9CHLO)

HSP 1 Score: 272 bits (695), Expect = 1.930e-81
Identity = 124/214 (57.94%), Postives = 161/214 (75.23%), Query Frame = 3
Query:   15 RAGPATPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGALRS 650
            +AGP  P P Y   DS+PL++ ++ +FR K+ A IG D+   GY+ ++D+ R LN  +   R+ Q T+R++LKSLFPSWLP +FAVMFSKP P FS +LNA  T +  QWLMGP ++NDVE+D GS+G G G+LVERCR+LE AGCAS+C+N+CKVPT+EFF KDMGL L MTPNYEDFSCQF+F K PLP+ +D++F   CF+QCPS  A  S
Sbjct:    1 QAGPVEPVPDYTAIDSQPLNQVVMALFRRKMVAAIGSDSQLSGYEAIIDLTRRLNASYSEARQVQLTTRKILKSLFPSWLPGAFAVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVELDDGSVGQGMGVLVERCRYLEQAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYEDFSCQFTFGKAPLPQQLDEAFSTPCFQQCPSRAARYS 214          
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A8J4BT63_9CHLO (D27-like_C domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BT63_9CHLO)

HSP 1 Score: 272 bits (696), Expect = 3.620e-81
Identity = 125/207 (60.39%), Postives = 156/207 (75.36%), Query Frame = 3
Query:   18 AGPATPRPVYDD--SRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPS 632
            AGP  P P Y D  S+P++  ++ +FR K+ A +G D+   GYD ++D+ R LN KFR+  ETQE +R +L +LFPSWLP +F VMFSKPFP FS RLNA  T +  QWLMGP ++NDVEIDGG +G GHG+LVERCR+LE AGCASVC+N+CK+PT+ FF KDMGL L MTPNYEDFSCQF+F KTP+   MD++F   CF QCPS
Sbjct:   42 AGPTDPAPSYRDIDSQPVNVVVMALFRRKMVAALGSDSELYGYDAIIDLTRRLNSKFRTGAETQEATRAILNALFPSWLPGAFKVMFSKPFPEFSCRLNALATALTCQWLMGPCKVNDVEIDGGIVGKGHGVLVERCRYLEQAGCASVCINSCKIPTQTFFSKDMGLQLTMTPNYEDFSCQFAFGKTPMLAEMDEAFTTPCFRQCPS 248          
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A0D2MYG1_9CHLO (D27-like_C domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MYG1_9CHLO)

HSP 1 Score: 270 bits (689), Expect = 8.670e-80
Identity = 122/208 (58.65%), Postives = 157/208 (75.48%), Query Frame = 3
Query:   15 RAGPATPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPS 632
            +AGP TP P Y   D++PL+R ++ +FR K+   IG D+   GY  ++D+ R LN ++++ R+TQ  +RR+L SLFPSWLP +F VMFS P PAFS RLNA  T +  QWLMGP ++NDVE+D G +G G G+LVERCR+LE AGCAS+C+N+CKVPT+EFF KDMGL L MTPNYEDFSCQF+F KTPLP+  D++F   CF QCPS
Sbjct:   64 QAGPGTPAPSYAEIDAQPLNRVVMALFRRKMVESIGSDSQLQGYPAIIDLTRRLNRQYQTARDTQLATRRILNSLFPSWLPGAFKVMFSAPLPAFSCRLNALATALTCQWLMGPCKVNDVELDSGEVGSGMGVLVERCRYLEEAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYEDFSCQFAFGKTPLPQSQDEAFSTPCFTQCPS 271          
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A8IC34_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IC34_CHLRE)

HSP 1 Score: 265 bits (676), Expect = 4.230e-78
Identity = 123/208 (59.13%), Postives = 152/208 (73.08%), Query Frame = 3
Query:   15 RAGPATPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPS 632
            +AGP    P Y   DS+PL+  ++ +FR K+   +G D+   GYD ++D+ R LN KFR+  ETQE +R +L +LFPSWLP +F VMFS+P P FS RLNA  T +  QWLMGP ++NDVEIDGG +G GHG+LVERCR+LE AGCASVC+N+CKVPT+ FF KDMGL L MTPNY+DFSCQFSF KTP P   D +F   CF QCPS
Sbjct:   50 QAGPVDAAPDYKPIDSQPLNIIVMALFRRKMVEALGSDSKLSGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNALATAMTCQWLMGPCKVNDVEIDGGKVGTGHGVLVERCRYLEQAGCASVCINSCKVPTQSFFEKDMGLPLTMTPNYDDFSCQFSFGKTPDPVDRDPAFATPCFTQCPS 257          
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A2V0P122_9CHLO (D27-like_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P122_9CHLO)

HSP 1 Score: 263 bits (671), Expect = 9.010e-77
Identity = 119/208 (57.21%), Postives = 155/208 (74.52%), Query Frame = 3
Query:   15 RAGPATPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPS 632
            +AGPA   P Y   D++PL+R ++ +FR K+A  IG D+   GY  ++D+ R LN ++ + R+TQ T+R +L SLFP WLP +F  MFS+P PA S RLNA+ T +  QWLMGP ++NDVEIDGG +G G G+LVERCR+LE AGCAS+C+N+CKVPT+EFF KDMGL L MTPNY+DFSCQF+F KTP P+  D++F   CF QCPS
Sbjct:   21 QAGPAAAAPDYAGVDAQPLNRVVMALFRRKMAEAIGSDSQLQGYPAIIDLTRRLNRQYPTARDTQLTTRAILNSLFPGWLPGAFRAMFSRPLPALSCRLNAFATALTCQWLMGPCKVNDVEIDGGQVGAGMGVLVERCRYLEEAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYDDFSCQFAFGKTPQPQAEDEAFSTPCFTQCPS 228          
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A2J8AIV6_9CHLO (D27-like_C domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV6_9CHLO)

HSP 1 Score: 261 bits (666), Expect = 3.390e-75
Identity = 117/209 (55.98%), Postives = 156/209 (74.64%), Query Frame = 3
Query:   30 TPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGALRS 650
            +P P Y   D +PL++ ++ +FR K+ A +G D+   GYD ++D+ R LN KFR+  ETQE +R +L +LFPSWLP +F VMF++P P  S R+NA  T +  QWLMGP ++NDVE D G++G GHG+LVERCR+LE AGCA+VC+N+CKVPT+ FF KDMGLAL MTPNY+DFSCQF+F KTPLP   D+++  +CF QCPS  A R+
Sbjct:  169 SPTPSYAAIDVQPLNKIVMALFRRKMVAAVGSDSPLSGYDAIIDLTRRLNNKFRTAAETQEATRSILIALFPSWLPGAFKVMFARPLPELSCRMNALATALTCQWLMGPCKVNDVETDDGTVGEGHGVLVERCRYLEQAGCAAVCINSCKVPTQSFFAKDMGLALTMTPNYDDFSCQFAFGKTPLPVSADEAYTTSCFAQCPSKKARRN 377          
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A836B305_CHLIN (D27-like_C domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A836B305_CHLIN)

HSP 1 Score: 251 bits (642), Expect = 2.980e-74
Identity = 114/188 (60.64%), Postives = 141/188 (75.00%), Query Frame = 3
Query:   78 LGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGA 641
            + +FR K+   +G D+   GYD ++D+ R LN KFR+  ETQE +R +L +LFPSWLP +F VMFS+P P FS RLNA+ T +  QWLMGP ++NDVEIDGG +G GHG+LVERCR+LE AGCASVC+N+CKVPT+ FF +DMGL L MTPNY+DFSCQFSF KTP P   D +F   CF QCPS  A
Sbjct:    1 MALFRRKMVDALGADSKLSGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNAFATAMTCQWLMGPCKVNDVEIDGGQVGTGHGVLVERCRYLEQAGCASVCINSCKVPTQSFFERDMGLPLTMTPNYDDFSCQFSFGKTPDPVERDPAFATPCFVQCPSKRA 188          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEW1_ECTSI6.970e-12982.68D27-like_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A835ZDY9_9STRA4.710e-8663.90D27-like_C domain-containing protein n=1 Tax=Tribo... [more]
I0YX40_COCSC4.320e-8357.08D27-like_C domain-containing protein n=1 Tax=Cocco... [more]
A0A7J7QQS2_9CHLO1.930e-8157.94D27-like_C domain-containing protein n=1 Tax=Scene... [more]
A0A8J4BT63_9CHLO3.620e-8160.39D27-like_C domain-containing protein n=2 Tax=Volvo... [more]
A0A0D2MYG1_9CHLO8.670e-8058.65D27-like_C domain-containing protein n=1 Tax=Monor... [more]
A8IC34_CHLRE4.230e-7859.13Predicted protein n=2 Tax=Chlamydomonas reinhardti... [more]
A0A2V0P122_9CHLO9.010e-7757.21D27-like_C domain-containing protein n=1 Tax=Raphi... [more]
A0A2J8AIV6_9CHLO3.390e-7555.98D27-like_C domain-containing protein n=1 Tax=Tetra... [more]
A0A836B305_CHLIN2.980e-7460.64D27-like_C domain-containing protein n=2 Tax=Chlam... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10982contigH-elongata_contig10982:2590..6603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score326.6
Seed ortholog evalue7.1e-87
Seed eggNOG ortholog2880.D8LEW1
EggNOG free text desc.Domain of unknown function (DUF4033)
EggNOG OGs28YJ7@1,2R5D2@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF4033
Ec32 orthologEc-21_005770.1
Exons5
Model size2736
Cds size540
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.8871605-UTR-H-elongata_contig10982:2589..27381622929624.8871605-UTR-H-elongata_contig10982:2589..2738Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10982 2590..2738 +
1691679096.1141987-UTR-H-elongata_contig10982:2589..27381691679096.1141987-UTR-H-elongata_contig10982:2589..2738Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10982 2590..2738 +
1622929624.9992852-UTR-H-elongata_contig10982:4556..66031622929624.9992852-UTR-H-elongata_contig10982:4556..6603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10982 4557..6603 +
1691679096.1634955-UTR-H-elongata_contig10982:4556..66031691679096.1634955-UTR-H-elongata_contig10982:4556..6603Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10982 4557..6603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.909362-CDS-H-elongata_contig10982:2738..28031622929624.909362-CDS-H-elongata_contig10982:2738..2803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10982 2739..2803 +
1691679096.1250472-CDS-H-elongata_contig10982:2738..28031691679096.1250472-CDS-H-elongata_contig10982:2738..2803Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10982 2739..2803 +
1622929624.9306774-CDS-H-elongata_contig10982:3231..33881622929624.9306774-CDS-H-elongata_contig10982:3231..3388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10982 3232..3388 +
1691679096.1317654-CDS-H-elongata_contig10982:3231..33881691679096.1317654-CDS-H-elongata_contig10982:3231..3388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10982 3232..3388 +
1622929624.9473717-CDS-H-elongata_contig10982:3738..38401622929624.9473717-CDS-H-elongata_contig10982:3738..3840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10982 3739..3840 +
1691679096.1394882-CDS-H-elongata_contig10982:3738..38401691679096.1394882-CDS-H-elongata_contig10982:3738..3840Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10982 3739..3840 +
1622929624.964931-CDS-H-elongata_contig10982:4101..41821622929624.964931-CDS-H-elongata_contig10982:4101..4182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10982 4102..4182 +
1691679096.1472216-CDS-H-elongata_contig10982:4101..41821691679096.1472216-CDS-H-elongata_contig10982:4101..4182Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10982 4102..4182 +
1622929624.9799635-CDS-H-elongata_contig10982:4421..45561622929624.9799635-CDS-H-elongata_contig10982:4421..4556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10982 4422..4556 +
1691679096.155214-CDS-H-elongata_contig10982:4421..45561691679096.155214-CDS-H-elongata_contig10982:4421..4556Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10982 4422..4556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10982.792.1prot_H-elongata_contig10982.792.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10982 2739..4556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10982.792.1

>prot_H-elongata_contig10982.792.1 ID=prot_H-elongata_contig10982.792.1|Name=mRNA_H-elongata_contig10982.792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp
MDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSS
RLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCA
SVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDS
FRVACFEQCPSNGALRSGTNIVRCHQIDV*
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mRNA from alignment at H-elongata_contig10982:2590..6603+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10982.792.1 ID=mRNA_H-elongata_contig10982.792.1|Name=mRNA_H-elongata_contig10982.792.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4014bp|location=Sequence derived from alignment at H-elongata_contig10982:2590..6603+ (Himanthalia elongata Himel1 dioecious)
AGTTCATTCGAGGACGAGCGGGACCCGCGACTCCCCGCCCCGTCTACGAC GATTCGCGCCCATTGGATCGTTTCCTGTTGGGTATTTTTCGATCCAAAGT GGCTGCCGAGATAGGCGGGGATGCCTACCCCCCCGGGTACGATGGCTTGA TGGACATGATTCGGGTGCTGAACGAAAAATTTCGGTCCAAACGGGAGACG CAGGAGACGTCCAGGTTCGTAATCGAATAACAGGAGGGCCGCTGGTGACT TTGCCTATGGTTGTGTTTGGTTGGCGAGTGTTCAGTGGTGAACGTCGTTT TGTAAGGTGGTCGACCCAATCCCGGAGTAAATGTACCGTAGTGCACTGCA CGTCTGTACGTTCAGTCACATTTTGATAATCTTGTTGTGAGCATCTTGCG CATTTCTTGTAGTGTGTAGAACTCCATGATAACCGTGGATTGCTTTGTTG CCAGGGAAGTGGATGTCCCCCCTGCGCCCCCCCCCCCCCCCCCCCCCCTT CTACCTTTCCTTTTTCTTGGCGGGGGGGGGGGGTGCTCTTTTTTCTTTTG TNNNNNNNNNNATTGCTTTGTTGCCAGGGAAGTGGATGTCCCCCATGCGC CCCCCACCCCCGTCCCCGTTCTGAAATATTCCTGTTGCGCAGGCGAGTGT TGAAGTCCTTATTCCCTTCGTGGCTGCCGGCAAGCTTCGCGGTAATGTTC TCGAAGCCTTTCCCCGCGTTCTCTTCTCGCTTGAACGCGTGGGTCACCCT CATTGCTTCGCAATGGCTCATGGGACCGTCGGAGCTGAACGACGTCGAGG TGAAGACTTCGGGACGAAGCCACGATTGATTTAACACGCGAAGGTCCACC AAAGCTCAAGTGTACCTCCGATTTTTAGTACAGTGGTACCGTGCTACAAT CCTACCGCGAGTGCACAGCACGCTTGTACGCTGTACATTGCGAGAGGGTG CGCTGTGCGTACACCATCACACCACTGTGCTCCTTTCCCCCGCGATTGCA ATGGCTTCCACCGTCGGGGAGGCAGCGGGTTGCACACAAGTGACATATCA CCTTCCAAGAAACGCCGTAAGTACCACTGCGCCTCACAGCTCCTCCACCA TTTCCTTCGCAAGAAGTTCAGAACTCTTTCCCCGGCGCGGATGTCGCAGA TCGACGGTGGGTCAATTGGGGTCGGACATGGTCTGCTGGTTGAACGCTGC AGGTTTCTCGAGGCGGCGGGGTGCGCATCTGTTTGCATGAACACTTGTAA GGTGATATTTACGAGGTAGCTGTTCGGGAACCGTGCAAGTGAAGGCAGCA GGTAGTGCGGGATGAGGCCGTACGCGATACGCATGGTGTCAAATTCGTGC CAGTAAGTAGTTTCGTCCGCAGAATGCGCACGTCGTGCCGAGATACGCGG CCAGCCTGAGCAAGACACCTCGCGGGCTACGTAACTGCAATGAGTGTCTT TTTATCGTCGCCGGCTCGCATCTCGGAAGCAGATGACGATATCGTGACAA ATCCTCTCGTAGGTGCCAACGGAAGAGTTCTTCATGAAGGACATGGGGCT AGCTCTAGAGATGACGCCGAACTACGAAGACTTCAGCTGCCAGGTGCAGT ACGTACACACGTGAAAGGGGGTGGTTATGTCAGACAGTACGTGAAAGGAG GTGTTTTCATTGTTGTTGAATGACACGCGAGGGTGGGGTTTAGATACCTT GATCGGTTGATACGGCGTGCAAGGCACCTCAAAGTTTCAGCAACCCTCCA AAGTATCCACCTCCACCGTCTTGCGGCAGCAACTTTTGACCCTTGATCGT GGTGGCTCGACGTGCTTCGCTCGCGCTTTCAGTTCTCGTTCAACAAGACA CCGCTTCCGAGGGTCATGGACGATAGCTTCCGGGTGGCTTGCTTCGAGCA GTGCCCTTCCAACGGAGCGCTGAGATCGGGCACCAACATCGTAAGATGTC ACCAAATAGATGTGTAGACATAACATAACGCAGTTTGAATCCTTACGCGA AGACGAGTTAATGTGTCTGAGGTGTTGTGGCTAGGTGCACGGGGTCGCCT GGCGAGTTGAATTTAGAGGAGAAATGGCTGCCGGTCGGGTGTTTGTCGGG TGGTTGGTACACGAGTACACTTAACTCGAAGTAGAAATTTGGTGTGAGCG CAAGCGATTCCGAGGGCGGAGTCGGGGACGTGTGTCCAACGTTTCGAGAA GAGTGTCCAAGGAAGAACGCTATAGCACCCCCATCCGATTTGTTTTAGAA GAGCCAGAGTTGGGGACCACAGTGGGGAAGATTTAAAAAAAATATATACG TGAAAACAAAAAACAAGCGATACGATCACCGGAGGATCTTGAATCATTAT TGTTTTCACTTTATATTTTGGTTCGCGCATCGGCGGATTGTCGCCGCTTG CAGTGCTCTGTTTTGTATCTTTCGCCAACGAGAGATAATCGCATTTGATC GTCCTTTTTTTGTGATAACATTCCGGGATTGTAGTGTGTTTGTACGTTGA TCGGCGTGTCTGAACCCCTCTAGCAAAGAGCCCTTCCGGGGCTATCACGT CTGTCGGATGGTTATGGAAGAAGACTGTTATAGGGACGTGGATCCCATCA TCGCCGTGAACATTATAAATTCGTGCGTTGTGGAACTGGCCGAGAATGAC GTGGGACTTAGCAAACTCTTGTACATCCATCTGATCGTCAACCTATTGTC CGAGCAAGTCCGTATTAAAGAGCGATTGCAGGGGCAAGACAAGGAAAATA ACCCAAGAGGCGCTTGTTGTTGCACTTAGAAACTAATGGGACCTCATTCC AGATTCAGCCTGGGTTGAGAGAATGAGCAGACTGATGCGGGACGGGACTG CTGAACCCGTCTCGCGAGACCAAATCTCAGGCGCGAACAGGGACAGGGGG AAATTGTTTTCCCTGTTCAACTGGCCTCGAGCAGAAGGAAAACCAAATCC GGTTGATTCTTCTGCTAAATATGCAACCATACGTGCATAAATAAATAAAT AAACACATACGAAGTACATACATACATACTACATACATCCAGTACATACT GAGCAGCAACCATTCCACAAAGTCCATCGACTCCGCGATATTCGCGTCGA GTTCTGATCGTCGAGACTAAGGCGACAACACCGGCGGTAAGAAGAAATGT AGTTGGCGAAAGACTGGTGGTGGTGTAGGATCCCGGGAAGGTAGTAGCAG TAGCAGCACTGCTGGCAGCGACGGCACTACTTTTACTAGCAAGAGCAACA GCGGTAGTGCCGGCGGAGGAATAACCCCCCGCCCCCAGATTTGTGCAACT TCTGTGGGAAGTCTGGTCATCAGAAGCCACAATGCCCACAGCGTGTATGC TACACGTGCATACAGCGTGGCCACGACTAATTTATCTGCAAAAACACCAA AGCCGGTTCGACCAACATGGCGATGGTGGCCAGGGGAAGCGAGTCGTCCG AATCTGAGCCAGATGGCGACCAACGCATTAAGATGAACGCTCTTATGGCC GGCTTCAAAGCCGAGGCTGATGGGTTTTCGTTTTTGGATGGTGGGGCTGA CATAGAGGCAAGGGATGAACCTTAGGTGGTCGATTCTGGAGCAAGTATGG CGATGACTCCCAGCGCCGATACCATGCAAGACTATCATGAGGGTCGCGTC TGTGTGAAGTTCATCGATTTTCGATCAGATAAAGGTTCGGTACCGCCGTT GATCCGCAAGGCTGCTCATGTACCCACTCTTGATCACAACCTCCTGTCTG TTAAGGGAATGTGTATGCATCTGCCTTTCGCTAGTATTCAATGTACAGTA GCTGCTCATGTAGTAGTGACGTATGTGGCGGTACTATATGTGTCGATTGT CATATAATGTATGCGGAGGAATGACTGTGCGTGTAGTTCTGTCGACGTTT GGTGATCGTTCTCACTCTCTGTGATCTCACCGGTTGGTCTGGAAGCTATA GCTATACTGGACGTCTCTTCGGGACTACTGGCTTACGACCTGGAAACCAT CTGCGTAGTGTGTG
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Coding sequence (CDS) from alignment at H-elongata_contig10982:2590..6603+

>mRNA_H-elongata_contig10982.792.1 ID=mRNA_H-elongata_contig10982.792.1|Name=mRNA_H-elongata_contig10982.792.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig10982:2590..6603+ (Himanthalia elongata Himel1 dioecious)
ATGGACATGATTCGGGTGCTGAACGAAAAATTTCGGTCCAAACGGGAGAC
GCAGGAGACGTCCAGATGGACATGATTCGGGTGCTGAACGAAAAATTTCG
GTCCAAACGGGAGACGCAGGAGACGTCCAGGCGAGTGTTGAAGTCCTTAT
TCCCTTCGTGGCTGCCGGCAAGCTTCGCGGTAATGTTCTCGAAGCCTTTC
CCCGCGTTCTCTTCTCGCTTGAACGCGTGGGTCACCCTCATTGCTTCGCA
ATGGCTCATGGGACCGTCGGAGCTGAACGACGTCGAGGCGAGTGTTGAAG
TCCTTATTCCCTTCGTGGCTGCCGGCAAGCTTCGCGGTAATGTTCTCGAA
GCCTTTCCCCGCGTTCTCTTCTCGCTTGAACGCGTGGGTCACCCTCATTG
CTTCGCAATGGCTCATGGGACCGTCGGAGCTGAACGACGTCGAGATCGAC
GGTGGGTCAATTGGGGTCGGACATGGTCTGCTGGTTGAACGCTGCAGGTT
TCTCGAGGCGGCGGGGTGCGCATCTGTTTGCATGAACACTTGTAAGATCG
ACGGTGGGTCAATTGGGGTCGGACATGGTCTGCTGGTTGAACGCTGCAGG
TTTCTCGAGGCGGCGGGGTGCGCATCTGTTTGCATGAACACTTGTAAGGT
GCCAACGGAAGAGTTCTTCATGAAGGACATGGGGCTAGCTCTAGAGATGA
CGCCGAACTACGAAGACTTCAGCTGCCAGGTGCCAACGGAAGAGTTCTTC
ATGAAGGACATGGGGCTAGCTCTAGAGATGACGCCGAACTACGAAGACTT
CAGCTGCCAGTTCTCGTTCAACAAGACACCGCTTCCGAGGGTCATGGACG
ATAGCTTCCGGGTGGCTTGCTTCGAGCAGTGCCCTTCCAACGGAGCGCTG
AGATCGGGCACCAACATCGTAAGATGTCACCAAATAGATGTGTAGTTCTC
GTTCAACAAGACACCGCTTCCGAGGGTCATGGACGATAGCTTCCGGGTGG
CTTGCTTCGAGCAGTGCCCTTCCAACGGAGCGCTGAGATCGGGCACCAAC
ATCGTAAGATGTCACCAAATAGATGTGTAG
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