mRNA_H-elongata_contig10982.792.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: D8LEW1_ECTSI (D27-like_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW1_ECTSI) HSP 1 Score: 399 bits (1026), Expect = 6.970e-129 Identity = 191/231 (82.68%), Postives = 207/231 (89.61%), Query Frame = 3
Query: 6 IRGRAGPATPRPVYDDSRPLDRFLLGIFRSKVAAEIGGD--AYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGALRSGTN--IVRCHQIDV 686
IRGRAGP P YDD+RPLDR LLG+FRSK+A E+GGD A+ PGYDGLMDMI+VLNEKF SKR+TQE SRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTL+ASQWLMGPS+LND+EID G++GVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFF KDMGLALEMTPNYEDFSCQFSFNKTPL R MD++FRVACFEQCPS GALR + RCHQID+
Sbjct: 82 IRGRAGPTDATPTYDDTRPLDRILLGLFRSKLAEEVGGDGDAFEPGYDGLMDMIKVLNEKFPSKRKTQEASRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLVASQWLMGPSKLNDIEIDDGTVGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFAKDMGLALEMTPNYEDFSCQFSFNKTPLARDMDEAFRVACFEQCPSRGALRQPNQPAVARCHQIDI 312
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A835ZDY9_9STRA (D27-like_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDY9_9STRA) HSP 1 Score: 283 bits (724), Expect = 4.710e-86 Identity = 131/205 (63.90%), Postives = 164/205 (80.00%), Query Frame = 3
Query: 72 FLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEK--FRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGALRSGTNIVRCHQI 680
LLG+FR K+AAE+ D PGY GL++MIR LN+ + + +TQ+ +R+VL+SLFP WLP +FAVMFSKPFP FS R+NAWVTL+ASQWLMGPS++NDVEIDGG +GVGHGLLV+RCR+LE AGCASVC+NTCK+PT+EFFMKDMGL L+MTP+Y+DFSCQFSF K PL D+ F VACFEQCP+ + + CH++
Sbjct: 1 MLLGLFRKKLAAELQYDGSDPGYAGLIEMIRSLNDGPGYPTAHDTQQAARKVLQSLFPPWLPGAFAVMFSKPFPQFSCRMNAWVTLVASQWLMGPSKINDVEIDGGQMGVGHGLLVKRCRYLEEAGCASVCVNTCKIPTQEFFMKDMGLPLQMTPDYDDFSCQFSFGKIPLEPEQDEVFAVACFEQCPNKASTKR-----LCHKV 200
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: I0YX40_COCSC (D27-like_C domain-containing protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YX40_COCSC) HSP 1 Score: 276 bits (706), Expect = 4.320e-83 Identity = 129/226 (57.08%), Postives = 164/226 (72.57%), Query Frame = 3
Query: 15 RAGPATPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGALRSGTNIVRCHQIDV 686
+AGP TP P Y+ DS+PL+R ++ +FR K+ A IG ++ GYD ++D+ R+LN K + R+TQ +R++L SLFPSWLP +F VMFSKP P S +LNAWVT++ QWLMGP ++NDVE+DGG IG G G+LVERCR+LE GCASVC+N+CK+PT+EFF KDMGL L MTPNYEDFSCQFSF TP P +D++F CF QCPS R RC DV
Sbjct: 7 KAGPETPAPSYESIDSQPLNRAIMSLFRQKMVAAIGKNSDKEGYDAIVDLTRLLNSKSSNPRDTQVKTRQILLSLFPSWLPPAFKVMFSKPMPEVSCQLNAWVTMLTCQWLMGPCKVNDVELDGGRIGSGQGVLVERCRYLEETGCASVCLNSCKIPTQEFFAKDMGLPLTMTPNYEDFSCQFSFGLTPKPAAIDEAFATPCFSQCPSKQRHRGD----RCPGADV 228
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A7J7QQS2_9CHLO (D27-like_C domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QQS2_9CHLO) HSP 1 Score: 272 bits (695), Expect = 1.930e-81 Identity = 124/214 (57.94%), Postives = 161/214 (75.23%), Query Frame = 3
Query: 15 RAGPATPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGALRS 650
+AGP P P Y DS+PL++ ++ +FR K+ A IG D+ GY+ ++D+ R LN + R+ Q T+R++LKSLFPSWLP +FAVMFSKP P FS +LNA T + QWLMGP ++NDVE+D GS+G G G+LVERCR+LE AGCAS+C+N+CKVPT+EFF KDMGL L MTPNYEDFSCQF+F K PLP+ +D++F CF+QCPS A S
Sbjct: 1 QAGPVEPVPDYTAIDSQPLNQVVMALFRRKMVAAIGSDSQLSGYEAIIDLTRRLNASYSEARQVQLTTRKILKSLFPSWLPGAFAVMFSKPLPEFSCKLNALATALTCQWLMGPCKVNDVELDDGSVGQGMGVLVERCRYLEQAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYEDFSCQFTFGKAPLPQQLDEAFSTPCFQQCPSRAARYS 214
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A8J4BT63_9CHLO (D27-like_C domain-containing protein n=2 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BT63_9CHLO) HSP 1 Score: 272 bits (696), Expect = 3.620e-81 Identity = 125/207 (60.39%), Postives = 156/207 (75.36%), Query Frame = 3
Query: 18 AGPATPRPVYDD--SRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPS 632
AGP P P Y D S+P++ ++ +FR K+ A +G D+ GYD ++D+ R LN KFR+ ETQE +R +L +LFPSWLP +F VMFSKPFP FS RLNA T + QWLMGP ++NDVEIDGG +G GHG+LVERCR+LE AGCASVC+N+CK+PT+ FF KDMGL L MTPNYEDFSCQF+F KTP+ MD++F CF QCPS
Sbjct: 42 AGPTDPAPSYRDIDSQPVNVVVMALFRRKMVAALGSDSELYGYDAIIDLTRRLNSKFRTGAETQEATRAILNALFPSWLPGAFKVMFSKPFPEFSCRLNALATALTCQWLMGPCKVNDVEIDGGIVGKGHGVLVERCRYLEQAGCASVCINSCKIPTQTFFSKDMGLQLTMTPNYEDFSCQFAFGKTPMLAEMDEAFTTPCFRQCPS 248
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A0D2MYG1_9CHLO (D27-like_C domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MYG1_9CHLO) HSP 1 Score: 270 bits (689), Expect = 8.670e-80 Identity = 122/208 (58.65%), Postives = 157/208 (75.48%), Query Frame = 3
Query: 15 RAGPATPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPS 632
+AGP TP P Y D++PL+R ++ +FR K+ IG D+ GY ++D+ R LN ++++ R+TQ +RR+L SLFPSWLP +F VMFS P PAFS RLNA T + QWLMGP ++NDVE+D G +G G G+LVERCR+LE AGCAS+C+N+CKVPT+EFF KDMGL L MTPNYEDFSCQF+F KTPLP+ D++F CF QCPS
Sbjct: 64 QAGPGTPAPSYAEIDAQPLNRVVMALFRRKMVESIGSDSQLQGYPAIIDLTRRLNRQYQTARDTQLATRRILNSLFPSWLPGAFKVMFSAPLPAFSCRLNALATALTCQWLMGPCKVNDVELDSGEVGSGMGVLVERCRYLEEAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYEDFSCQFAFGKTPLPQSQDEAFSTPCFTQCPS 271
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A8IC34_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8IC34_CHLRE) HSP 1 Score: 265 bits (676), Expect = 4.230e-78 Identity = 123/208 (59.13%), Postives = 152/208 (73.08%), Query Frame = 3
Query: 15 RAGPATPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPS 632
+AGP P Y DS+PL+ ++ +FR K+ +G D+ GYD ++D+ R LN KFR+ ETQE +R +L +LFPSWLP +F VMFS+P P FS RLNA T + QWLMGP ++NDVEIDGG +G GHG+LVERCR+LE AGCASVC+N+CKVPT+ FF KDMGL L MTPNY+DFSCQFSF KTP P D +F CF QCPS
Sbjct: 50 QAGPVDAAPDYKPIDSQPLNIIVMALFRRKMVEALGSDSKLSGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNALATAMTCQWLMGPCKVNDVEIDGGKVGTGHGVLVERCRYLEQAGCASVCINSCKVPTQSFFEKDMGLPLTMTPNYDDFSCQFSFGKTPDPVDRDPAFATPCFTQCPS 257
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A2V0P122_9CHLO (D27-like_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P122_9CHLO) HSP 1 Score: 263 bits (671), Expect = 9.010e-77 Identity = 119/208 (57.21%), Postives = 155/208 (74.52%), Query Frame = 3
Query: 15 RAGPATPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPS 632
+AGPA P Y D++PL+R ++ +FR K+A IG D+ GY ++D+ R LN ++ + R+TQ T+R +L SLFP WLP +F MFS+P PA S RLNA+ T + QWLMGP ++NDVEIDGG +G G G+LVERCR+LE AGCAS+C+N+CKVPT+EFF KDMGL L MTPNY+DFSCQF+F KTP P+ D++F CF QCPS
Sbjct: 21 QAGPAAAAPDYAGVDAQPLNRVVMALFRRKMAEAIGSDSQLQGYPAIIDLTRRLNRQYPTARDTQLTTRAILNSLFPGWLPGAFRAMFSRPLPALSCRLNAFATALTCQWLMGPCKVNDVEIDGGQVGAGMGVLVERCRYLEEAGCASICINSCKVPTQEFFEKDMGLPLTMTPNYDDFSCQFAFGKTPQPQAEDEAFSTPCFTQCPS 228
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A2J8AIV6_9CHLO (D27-like_C domain-containing protein n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8AIV6_9CHLO) HSP 1 Score: 261 bits (666), Expect = 3.390e-75 Identity = 117/209 (55.98%), Postives = 156/209 (74.64%), Query Frame = 3
Query: 30 TPRPVYD--DSRPLDRFLLGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGALRS 650
+P P Y D +PL++ ++ +FR K+ A +G D+ GYD ++D+ R LN KFR+ ETQE +R +L +LFPSWLP +F VMF++P P S R+NA T + QWLMGP ++NDVE D G++G GHG+LVERCR+LE AGCA+VC+N+CKVPT+ FF KDMGLAL MTPNY+DFSCQF+F KTPLP D+++ +CF QCPS A R+
Sbjct: 169 SPTPSYAAIDVQPLNKIVMALFRRKMVAAVGSDSPLSGYDAIIDLTRRLNNKFRTAAETQEATRSILIALFPSWLPGAFKVMFARPLPELSCRMNALATALTCQWLMGPCKVNDVETDDGTVGEGHGVLVERCRYLEQAGCAAVCINSCKVPTQSFFAKDMGLALTMTPNYDDFSCQFAFGKTPLPVSADEAYTTSCFAQCPSKKARRN 377
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Match: A0A836B305_CHLIN (D27-like_C domain-containing protein n=2 Tax=Chlamydomonas TaxID=3052 RepID=A0A836B305_CHLIN) HSP 1 Score: 251 bits (642), Expect = 2.980e-74 Identity = 114/188 (60.64%), Postives = 141/188 (75.00%), Query Frame = 3
Query: 78 LGIFRSKVAAEIGGDAYPPGYDGLMDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSRLNAWVTLIASQWLMGPSELNDVEIDGGSIGVGHGLLVERCRFLEAAGCASVCMNTCKVPTEEFFMKDMGLALEMTPNYEDFSCQFSFNKTPLPRVMDDSFRVACFEQCPSNGA 641
+ +FR K+ +G D+ GYD ++D+ R LN KFR+ ETQE +R +L +LFPSWLP +F VMFS+P P FS RLNA+ T + QWLMGP ++NDVEIDGG +G GHG+LVERCR+LE AGCASVC+N+CKVPT+ FF +DMGL L MTPNY+DFSCQFSF KTP P D +F CF QCPS A
Sbjct: 1 MALFRRKMVDALGADSKLSGYDAIIDLTRKLNTKFRTAAETQEATRGILNALFPSWLPGAFKVMFSRPLPEFSCRLNAFATAMTCQWLMGPCKVNDVEIDGGQVGTGHGVLVERCRYLEQAGCASVCINSCKVPTQSFFERDMGLPLTMTPNYDDFSCQFSFGKTPDPVERDPAFATPCFVQCPSKRA 188 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10982.792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10982.792.1 >prot_H-elongata_contig10982.792.1 ID=prot_H-elongata_contig10982.792.1|Name=mRNA_H-elongata_contig10982.792.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp MDMIRVLNEKFRSKRETQETSRRVLKSLFPSWLPASFAVMFSKPFPAFSSback to top mRNA from alignment at H-elongata_contig10982:2590..6603+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10982.792.1 ID=mRNA_H-elongata_contig10982.792.1|Name=mRNA_H-elongata_contig10982.792.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4014bp|location=Sequence derived from alignment at H-elongata_contig10982:2590..6603+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10982:2590..6603+ >mRNA_H-elongata_contig10982.792.1 ID=mRNA_H-elongata_contig10982.792.1|Name=mRNA_H-elongata_contig10982.792.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig10982:2590..6603+ (Himanthalia elongata Himel1 dioecious)back to top |