prot_H-elongata_contig10978.790.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10978.790.1
Unique Nameprot_H-elongata_contig10978.790.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length134
Homology
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BLAST of mRNA_H-elongata_contig10978.790.1 vs. uniprot
Match: D8LTU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU4_ECTSI)

HSP 1 Score: 77.4 bits (189), Expect = 6.520e-14
Identity = 56/139 (40.29%), Postives = 71/139 (51.08%), Query Frame = 0 
Query:    2 VTPAPIHIAVVCPEPSPPP--ISPLDNAQELSPWRKFVEGAD--DNRAV--------KRVNTGFDM-SDSGSTSARRRVRVMYTLGTRLVGPPRVVLEGRWYSLPWRNQPCTGTQSLH-----ITLPLPTSLRVTQWGP 122
            V PAPIH+AVVCPE       ++P  +   +       +  +  D+R +         RV  G    S  G  +  RR RV +T+  R+VGPPRVVLEGRWYSLP+      GT   H      TL LPT LR T+WGP
Sbjct: 1070 VPPAPIHMAVVCPEXXXXXXXLAPAFDGSGIGILAATAQADETLDDRGIFGGVLQEPGRVEGGATRGSVGGQVATPRRKRVRFTVRVRVVGPPRVVLEGRWYSLPFGTDTGGGTTGPHPLAAFATLRLPTPLRATRWGP 1208
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BLAST of mRNA_H-elongata_contig10978.790.1 vs. uniprot
Match: A0A6H5K4Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z7_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 8.020e-11
Identity = 44/103 (42.72%), Postives = 51/103 (49.51%), Query Frame = 0 
Query:   25 DNAQELSPWRKFVEGADDNRAVKRVNTGFDMSDSGSTSARRRVRVMYTLGTRLVGPPRVVLEGRWYSLPWRNQPCTGTQSLH-----ITLPLPTSLRVTQWGP 122
            D A E    R    G  D +   RV  G      G   A  R RV +T+  R+VGPPRVVLEGRWYSLP+      G    H      TL LPT L+ T+WGP
Sbjct: 1064 DQADETLDDRGIFGG--DLQEPARVVDGATTGSVGRQVAPTRKRVRFTVRVRVVGPPRVVLEGRWYSLPFGTDTGEGMTGPHPLATFATLRLPTPLKATRWGP 1164
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10978.790.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTU4_ECTSI6.520e-1440.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4Z7_9PHAE8.020e-1142.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10978contigH-elongata_contig10978:1877..2774 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10978.790.1mRNA_H-elongata_contig10978.790.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10978 921..4411 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10978.790.1 ID=prot_H-elongata_contig10978.790.1|Name=mRNA_H-elongata_contig10978.790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MVTPAPIHIAVVCPEPSPPPISPLDNAQELSPWRKFVEGADDNRAVKRVN
TGFDMSDSGSTSARRRVRVMYTLGTRLVGPPRVVLEGRWYSLPWRNQPCT
GTQSLHITLPLPTSLRVTQWGPLPGDGNTCKEG*
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