mRNA_H-elongata_contig10978.790.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10978.790.1
Unique NamemRNA_H-elongata_contig10978.790.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10978.790.1 vs. uniprot
Match: D8LTU4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU4_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 1.030e-64
Identity = 181/470 (38.51%), Postives = 227/470 (48.30%), Query Frame = 1 
Query:    1 RDLPQGKKVAGVVCQGQQTVFYTSACPTERGACLEVILQSEKVAKCYNGEAGTYGESGSGKVGSILSLYAVHAHVRPTRLSSYSWASRGKIFHRLLLNWKGRQLSSDPGHEVA---------KGSAVSS-------LASPEKAM---------VTPAPIHIAVVCPEPSPPP--ISPLDNAQELSPWRKFVEGAD--DNRAV--------KRVNTGFDM-SDSGSTSARRRVRVMYTLGTRLVGPPRVVLEGRWYSLPWRNQPCTGTQSLH-----ITLPLPTSLRVTQWGP--LPGDGNTCKEG*GIENEENCPLFVDAQVLVTLQVNPKLKDASRRVDVYCDSFPRPGPNPTEHTWWMSAGG---------AQLKAASESPNRRFQNQLDASPWTTDSARVSGGGGRWTPFPAHDAT-DVGGAGWSRMTVAMPRDHGGSFHVGVFSADHGKTARGLG---GGTIDMKV 1236
            R L QG++VAG V QGQ   FY + CPTERGACLE+ L+S      ++  +   G S    + + +SLYAV A  RP RLS Y+W SRGK  HRLLLNWKG       G E            G+ +SS         SP  A          V PAPIH+AVVCPE       ++P  +   +       +  +  D+R +         RV  G    S  G  +  RR RV +T+  R+VGPPRVVLEGRWYSLP+      GT   H      TL LPT LR T+WGP   P D     +      EE+   FVD++ LVTLQ      D    VD+YC + PRP P+P +HTW M  GG         A     + +P++                              H A  +V GAG SRMTVAMPRDH G+FHVGVF  +  KT  G G   GGTI++KV
Sbjct:  924 RVLLQGERVAGSVRQGQ-AAFYQTPCPTERGACLEITLES------HDDGSRAPGRSNDNGIPTAISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPAAGLKGGDEGTLSPAPSPPRTGAVISSPWDGVRGYTSPRPATASASKPWKPVPPAPIHMAVVCPEXXXXXXXLAPAFDGSGIGILAATAQADETLDDRGIFGGVLQEPGRVEGGATRGSVGGQVATPRRKRVRFTVRVRVVGPPRVVLEGRWYSLPFGTDTGGGTTGPHPLAAFATLRLPTPLRATRWGPDSYPEDPFGDLDVSVFAGEEDRSGFVDSETLVTLQARHSTCDPDA-VDIYCGTSPRPRPSPADHTWRMPIGGXXXXXXSGVAARVPGAPAPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXNHHGAAGEVAGAGVSRMTVAMPRDHTGAFHVGVFGRERRKTTTGGGTARGGTINIKV 1385
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BLAST of mRNA_H-elongata_contig10978.790.1 vs. uniprot
Match: A0A6H5K4Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4Z7_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 4.410e-39
Identity = 124/338 (36.69%), Postives = 154/338 (45.56%), Query Frame = 1 
Query:    1 RDLPQGKKVAGVVCQGQQTVFYTSACPTERGACLEVILQSEKVAKCYNGEAGTYGESGSGKVGSILSLYAVHAHVRPTRLSSYSWASRGKIFHRLLLNWKGRQLSSDPGHEVA---------KGSAVSSLASPEKAMVTPAPIHIAVVCP-EPSPPP-----------------------------ISPLDNAQELSPWRKFVEGADDNRAVKRVNTGFDMSDSGSTSARRRVRVMYTLGTRLVGPPRVVLEGRWYSLPWRNQPCTGTQSLH-----ITLPLPTSLRVTQWGP--LPGDGNTCKEG*GIENEENCPLFVDAQVLVTLQVNPKLKDASR 876
            R L QG++VAG V QGQ   FY + CPTERGACLE+ L+S        G +   G      + + +SLYAV A  RP RLS Y+W SRGK  HRLLLNWKG       G E            G  +SS     +   +P P   +   P +P PP                              ++  D A E    R    G  D +   RV  G      G   A  R RV +T+  R+VGPPRVVLEGRWYSLP+      G    H      TL LPT L+ T+WGP   P D    ++      EE+ P FVD+  LVTLQV  +L+   R
Sbjct:  881 RVLLQGERVAGSVRQGQ-AAFYQTPCPTERGACLEITLESHDTGSRARGRSNDNG------IPTAISLYAVQAPHRPLRLSFYTWVSRGKTHHRLLLNWKGPAAGLKGGDEGTLSPAPSPPRTGKLISSPWDGVRGYTSPRPATASASKPWKPVPPAXXXXXXXXXXXXXXXXXLAPAFDGSGIGILAAPDQADETLDDRGIFGG--DLQEPARVVDGATTGSVGRQVAPTRKRVRFTVRVRVVGPPRVVLEGRWYSLPFGTDTGEGMTGPHPLATFATLRLPTPLKATRWGPDSYPADPFGDRDVSVFSGEEDRPGFVDSATLVTLQVRARLRARGR 1209
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10978.790.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTU4_ECTSI1.030e-6438.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4Z7_9PHAE4.410e-3936.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10978contigH-elongata_contig10978:921..4411 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1236
Cds size402
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.4232774-UTR-H-elongata_contig10978:920..9711622929624.4232774-UTR-H-elongata_contig10978:920..971Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 921..971 +
1691679095.9407237-UTR-H-elongata_contig10978:920..9711691679095.9407237-UTR-H-elongata_contig10978:920..971Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 921..971 +
1622929624.4364488-UTR-H-elongata_contig10978:1546..18761622929624.4364488-UTR-H-elongata_contig10978:1546..1876Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 1547..1876 +
1691679095.9502637-UTR-H-elongata_contig10978:1546..18761691679095.9502637-UTR-H-elongata_contig10978:1546..1876Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 1547..1876 +
1622929624.5408828-UTR-H-elongata_contig10978:2774..28621622929624.5408828-UTR-H-elongata_contig10978:2774..2862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 2775..2862 +
1691679095.9903347-UTR-H-elongata_contig10978:2774..28621691679095.9903347-UTR-H-elongata_contig10978:2774..2862Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 2775..2862 +
1622929624.553098-UTR-H-elongata_contig10978:3084..32121622929624.553098-UTR-H-elongata_contig10978:3084..3212Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 3085..3212 +
1691679096.0014474-UTR-H-elongata_contig10978:3084..32121691679096.0014474-UTR-H-elongata_contig10978:3084..3212Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 3085..3212 +
1622929624.5684617-UTR-H-elongata_contig10978:3991..41571622929624.5684617-UTR-H-elongata_contig10978:3991..4157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 3992..4157 +
1691679096.0098655-UTR-H-elongata_contig10978:3991..41571691679096.0098655-UTR-H-elongata_contig10978:3991..4157Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 3992..4157 +
1622929624.5821483-UTR-H-elongata_contig10978:4340..44111622929624.5821483-UTR-H-elongata_contig10978:4340..4411Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 4341..4411 +
1691679096.0179827-UTR-H-elongata_contig10978:4340..44111691679096.0179827-UTR-H-elongata_contig10978:4340..4411Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10978 4341..4411 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.4535205-CDS-H-elongata_contig10978:1876..21391622929624.4535205-CDS-H-elongata_contig10978:1876..2139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10978 1877..2139 +
1691679095.9582934-CDS-H-elongata_contig10978:1876..21391691679095.9582934-CDS-H-elongata_contig10978:1876..2139Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10978 1877..2139 +
1622929624.4796727-CDS-H-elongata_contig10978:2572..27091622929624.4796727-CDS-H-elongata_contig10978:2572..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10978 2573..2709 +
1691679095.965672-CDS-H-elongata_contig10978:2572..27091691679095.965672-CDS-H-elongata_contig10978:2572..2709Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10978 2573..2709 +
1622929624.4949455-CDS-H-elongata_contig10978:2772..27741622929624.4949455-CDS-H-elongata_contig10978:2772..2774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10978 2773..2774 +
1691679095.973999-CDS-H-elongata_contig10978:2772..27741691679095.973999-CDS-H-elongata_contig10978:2772..2774Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10978 2773..2774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10978.790.1prot_H-elongata_contig10978.790.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10978 1877..2774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10978.790.1

>prot_H-elongata_contig10978.790.1 ID=prot_H-elongata_contig10978.790.1|Name=mRNA_H-elongata_contig10978.790.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MVTPAPIHIAVVCPEPSPPPISPLDNAQELSPWRKFVEGADDNRAVKRVN
TGFDMSDSGSTSARRRVRVMYTLGTRLVGPPRVVLEGRWYSLPWRNQPCT
GTQSLHITLPLPTSLRVTQWGPLPGDGNTCKEG*
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mRNA from alignment at H-elongata_contig10978:921..4411+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10978.790.1 ID=mRNA_H-elongata_contig10978.790.1|Name=mRNA_H-elongata_contig10978.790.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3491bp|location=Sequence derived from alignment at H-elongata_contig10978:921..4411+ (Himanthalia elongata Himel1 dioecious)
AGAGATCTCCCGCAGGGGAAGAAGGTCGCCGGGGTGGTATGTCAGGGCCA
GGTACGCTCTTGTTGCAGTTTGATTATGAATTTATGTAGCCATTTGTAGC
AGAGGTTGGGAGTCCAAAGATCAATACATCCGGAATGGTGGATGCAGTCA
GGCATGGGAATATGACCTGCAAATATAAGTCAAACAAATTGACAGTAACT
TTGTTTTCACGCAAACGTAACCATTCTTCTAAACAAATGCGTATGTGCGC
CTTATTACCCTGTGTACGTCAAGTATCGGAATATAATATATCCCCCCCTG
CCTGATAGAACGATGACCTATAGAAAACTTGGGTGCCACAAACCGTCGTC
CCAAACACGTGCGTGCATAAAGCTGCATAATGTTGTCGGTATGTTTAAAA
ACAACACCCTCTAACCGCGAAGAACATCACCTACAAGCCGACAGTGGTGG
TACCTGCGGCGCTAAGTCCACAAAACAACTTATGTAACAAATTTAATACA
TGTTCATTATGACACACGTGAAGGATCGCACCTCAAGTGTCTTCCAATAC
CATTCATAATGGCCTGACACGCTCCCCCTTCTTCGCCTGTACTTCGCGTG
GCTGCTACACGTTACCATACCCTCAGCAGACTGTGTTTTACACGAGTGCG
TGTCCAACTGAGAGAGGAGCCTGCCTCGAGGTGATCCTCCAGTCAGAAAA
AGTGGCCAAATGCTACAACGGCGAAGCCGGCACTTACGGTGAAAGTGGCA
GTGGAAAGGTCGGCTCTATCCTAAGCCTCTACGCCGTGCACGCTCATGTT
CGCCCTACTCGTCTGTCGTCTTACTCATGGGCCTCCCGAGGAAAGATCTT
TCATAGGTTACTCCTCAACTGGAAGGGTCGGCAATTATCATCTGATCCAG
GACACGAGGTTGCCAAAGGGTCCGCAGTGTCGAGCTTGGCCTCTCCGGAA
AAGGCGATGGTGACCCCGGCTCCGATCCACATCGCGGTCGTGTGCCCCGA
GCCGTCCCCACCACCGATATCTCCTTTAGATAACGCCCAGGAACTCTCAC
CTTGGAGGAAATTTGTAGAAGGCGCAGACGATAACCGGGCGGTGAAGAGG
GTAAATACGGGGTTTGATATGTCCGATAGCGGGAGTACTAGCGCACGGAG
AAGGGTACGCGTGATGTACACTTTGGGGACGCGGTTGGTCGGACCTCCGA
GGGTGGTTCTGGAAGGGAGGTAAGTCAGGTGGGAAGCACTGCTCTGTCGT
GTTTTGCGACAGAGGAAACGGAACTAGCGACAAGTAATCGGCCGACCAAT
TCTGCAGAATGAGTAAGCTGGAAACAATCCAATAATGGTCCTGTTCGGAA
CAGGTTAAGACAGCACCTCCAGGAAAATATTTTGCAAATCCCCTTGTGAA
ATGATTTGTGTTCAGGGTATACTAGCATATCGGAGAGGAAAATATATTGA
CCTATTTCAAGGTGGATTGCTATGTGCCACCCCTGTCTGAACTCGGAGAG
CATATTCGTAGATGCTCATACTACCCCCCCTTTACCGTTGGATCACTCGA
ATATTCTTCCACTCTTCCATTCGAAACAGAGGAACACGCGTTTGTTGTAC
CTCCCTTTAATAATTTTATTTCCCTCGTCCGACATCACCGGTTAAACCCC
AGATGGTATTCTCTTCCTTGGAGGAATCAGCCTTGTACAGGAACGCAATC
TTTGCATATCACCCTACCATTACCTACGTCGCTGAGGGTTACGCAGTGGG
GGCCGCTTCCCGGGGATGGCAACACTTGCAAAGAGGGATGTACATTGACA
GGCGCCCAAAGGAAAGAAAAAACACGCCTCTCGGAACTGAACGCTGTGGA
AGAGGGCATAGAGAACGAGGAGAACTGTCCCCTTTTTGTGGACGCGCAGG
TTCTTGTTACCCTGCAGGTGAACCCTAAGCTCAAGGACGCTTGTATATCA
CGACTAACTACTCATATATCGTTATTTGATTCATTCTTGGAATGACCGTC
CCGCTCCTTTTCTCTGTAGAACGTTGCAATATAACCATCCTGTCTGGGTG
GTGGTGCAGCACAGCCACCGCTATCGGATAGCTCTACGTTTGCTGAGGAG
GAACCCGTTTCGTTTTGCGCCCATACCCTACCTGGAAAATCATAGTTACG
CCCTTCAGATCCAGCGAGGAGGGTAGATGTATACTGTGATTCTTTCCCCA
GACCTGGCCCCAACCCTACTGAGCACACCTGGTGGATGTCAGCTGGTGGT
GCTCAACTCAAAGCGGCATCAGAATCACCGAACCGCAGGTTTGTCGGCCT
CATAATCAGGAACACGAATAGTCCAAGCCCGAGAGCTAAGTAGGGCAGAG
TATATTGTGGTCATCTTCGCTCTTTGCATGGAAGTTTGACGACGAAGCAA
GAATGAAATGCCGGATTTAACGCTACCATCAGACCGTTGTTATATCGCAG
ATCGAAATCCCTTCGAGCCTTGATGCGAACTTTGATTTCTCTGGTGAACA
GTAAAGAATATCCCCTTCGCATTGATGGTATTGTTTTGCGGCCAGTAATG
CTGGTTCGCGTTTCAGGGGCCCTCTACACCCAAAACAATTAAAGACCTTC
CTTCGCCTATTTAGCGAATCGATGCATTTCTGAATCACGGTAGGTGAGCA
GTGGATTGTGCGGCACGAAAACGTGTTCGCCGTCACTGCCAAAAATGTAT
ACTTCCGCAAACGAACACCCGGTAATTGTAACAAAACTACCCCCTTGAGG
ATGCAACCTCCCAGCGGCTATTGTAATAACAGACACATCCTTCACAAATG
AGTCACACCATCAACCACCGAGCACCGAGAACATGCTTGCGTTTAGTGGT
AAAGGGATACTCACAAAATCTTTCTCGATCGGTTCCTATGACTTATCCTC
TACCCGTGGGAATGGGATAATTATGCAAGACGCACCGCAAATACGGAATC
TACTATCACCGGCCGAACGATTCAAGACATCGCGACACCCGGTAATACTC
CTGTCATCATCGATGGAAACGACTGTGAAATATATCGACACAGGGAAAAC
GAGCGACATGATTTGCTGAAGCAAAATCAACTTGATGCGTCACCGTGGAC
AACGGATTCTGCGCGTGTGTCGGGGGGCGGCGGCCGGTGGACGCCGTTTC
CAGCCCACGATGCGACAGATGTTGGGGGCGCCGGTTGGAGCAGGATGACG
GTGGCTATGCCCAGAGATCACGGAGGGTCCTTTCATGGTGATTACGGAGA
CATCAAGGCTATATGTACTGTCAATAAGAAATAAACGGATATTTTGATCT
GCGTTCACGAGGCTGGTTGCACTACATGGGAAGATTATGAAGAAGACGTG
ATTTCCCTGTAAGCACAGAGAAACCCTTCACAAAGCATTCCCTTGCCAAT
GTATTGCATTTTGCGCACAGTGGGCGTCTTTAGTGCTGACCATGGGAAGA
CGGCCAGAGGATTAGGCGGGGGGACGATTGACATGAAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig10978:921..4411+

>mRNA_H-elongata_contig10978.790.1 ID=mRNA_H-elongata_contig10978.790.1|Name=mRNA_H-elongata_contig10978.790.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig10978:921..4411+ (Himanthalia elongata Himel1 dioecious)
ATGGTGACCCCGGCTCCGATCCACATCGCGGTCGTGTGCCCCGAGCCGTC
CCCACCACCGATATCTCCTTTAGATAACGCCCAGGAACTCTCACCTTGGA
GGAAATTTGTAGAAGGCGCAGACGATAACCGGGCGGTGAAGAGGGTAAAT
ACGGGGTTTGATATGTCCGATAGCGGGAGTACTAGCGCACGGAGAAGGGT
ACGCGTGATGTACACTTTGGGGACGCGGTTGGTCGGACCTCCGAGGGTGG
TTCTGGAAGGGAGATGGTGACCCCGGCTCCGATCCACATCGCGGTCGTGT
GCCCCGAGCCGTCCCCACCACCGATATCTCCTTTAGATAACGCCCAGGAA
CTCTCACCTTGGAGGAAATTTGTAGAAGGCGCAGACGATAACCGGGCGGT
GAAGAGGGTAAATACGGGGTTTGATATGTCCGATAGCGGGAGTACTAGCG
CACGGAGAAGGGTACGCGTGATGTACACTTTGGGGACGCGGTTGGTCGGA
CCTCCGAGGGTGGTTCTGGAAGGGAGATGGTATTCTCTTCCTTGGAGGAA
TCAGCCTTGTACAGGAACGCAATCTTTGCATATCACCCTACCATTACCTA
CGTCGCTGAGGGTTACGCAGTGGGGGCCGCTTCCCGGGGATGGCAACACT
TGCAAAGAGGGATATGGTATTCTCTTCCTTGGAGGAATCAGCCTTGTACA
GGAACGCAATCTTTGCATATCACCCTACCATTACCTACGTCGCTGAGGGT
TACGCAGTGGGGGCCGCTTCCCGGGGATGGCAACACTTGCAAAGAGGGAT
AGAG
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