mRNA_H-elongata_contig109778.788.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109778.788.1
Unique NamemRNA_H-elongata_contig109778.788.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109778.788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109778contigH-elongata_contig109778:1567..1927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.201604-CDS-H-elongata_contig109778:1566..18691622929624.201604-CDS-H-elongata_contig109778:1566..1869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109778 1567..1869 +
1691679095.8843157-CDS-H-elongata_contig109778:1566..18691691679095.8843157-CDS-H-elongata_contig109778:1566..1869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109778 1567..1869 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.2193573-UTR-H-elongata_contig109778:1869..19271622929624.2193573-UTR-H-elongata_contig109778:1869..1927Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109778 1870..1927 +
1691679095.8978162-UTR-H-elongata_contig109778:1869..19271691679095.8978162-UTR-H-elongata_contig109778:1869..1927Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig109778 1870..1927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109778.788.1prot_H-elongata_contig109778.788.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109778 1567..1869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109778.788.1

>prot_H-elongata_contig109778.788.1 ID=prot_H-elongata_contig109778.788.1|Name=mRNA_H-elongata_contig109778.788.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=101bp
TTLPISPCCPKLKGIQPISPRLVTAYQYITCTYRDRCQFSNPRPRQTNLT
LVFPFSGTVRHLFRNNRNNPAHRLRGYCIELLGAAATHSNPPNTHTFLAP
*
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mRNA from alignment at H-elongata_contig109778:1567..1927+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109778.788.1 ID=mRNA_H-elongata_contig109778.788.1|Name=mRNA_H-elongata_contig109778.788.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=361bp|location=Sequence derived from alignment at H-elongata_contig109778:1567..1927+ (Himanthalia elongata Himel1 dioecious)
ACAACGTTGCCTATATCGCCCTGCTGTCCTAAGCTCAAAGGGATCCAACC
CATCTCTCCCCGATTGGTTACTGCCTACCAATATATTACTTGTACATATC
GGGATCGATGTCAGTTCAGCAATCCTAGACCTCGACAAACCAATCTTACT
CTTGTTTTCCCATTTTCCGGCACGGTACGGCACTTGTTCAGAAACAACAG
GAACAATCCTGCGCACCGGCTTCGTGGTTACTGCATTGAGCTGCTAGGTG
CTGCAGCTACTCATTCCAACCCTCCGAACACCCACACCTTCTTAGCACCG
TGAGAGGTACCATCCAGGGGACCAACTATCGTCGGGTTCGAATGTGTACA
TTACTATCTTT
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Coding sequence (CDS) from alignment at H-elongata_contig109778:1567..1927+

>mRNA_H-elongata_contig109778.788.1 ID=mRNA_H-elongata_contig109778.788.1|Name=mRNA_H-elongata_contig109778.788.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=606bp|location=Sequence derived from alignment at H-elongata_contig109778:1567..1927+ (Himanthalia elongata Himel1 dioecious)
ACAACGTTGCCTATATCGCCCTGCTGTCCTAAGCTCAAAGGGATCCAACC
CATCTCTCCCCGATTGGTTACTGCCTACCAATATATTACTTGTACATATC
GGGATCGATGTCAGTTCAGCAATCCTAGACCTCGACAAACCAATCTTACT
CTTGTTTTCCCATTTTCCGGCACGGTACGGCACTTGTTCAGAAACAACAG
GAACAATCCTGCGCACCGGCTTCGTGGTTACTGCATTGAGCTGCTAGGTG
CTGCAGCTACTCATTCCAACCCTCCGAACACCCACACCTTCTTAGCACCG
TGAACAACGTTGCCTATATCGCCCTGCTGTCCTAAGCTCAAAGGGATCCA
ACCCATCTCTCCCCGATTGGTTACTGCCTACCAATATATTACTTGTACAT
ATCGGGATCGATGTCAGTTCAGCAATCCTAGACCTCGACAAACCAATCTT
ACTCTTGTTTTCCCATTTTCCGGCACGGTACGGCACTTGTTCAGAAACAA
CAGGAACAATCCTGCGCACCGGCTTCGTGGTTACTGCATTGAGCTGCTAG
GTGCTGCAGCTACTCATTCCAACCCTCCGAACACCCACACCTTCTTAGCA
CCGTGA
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