mRNA_H-elongata_contig10977.786.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10977.786.1
Unique NamemRNA_H-elongata_contig10977.786.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10977.786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10977contigH-elongata_contig10977:5501..5839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929624.1099129-CDS-H-elongata_contig10977:5500..58391622929624.1099129-CDS-H-elongata_contig10977:5500..5839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10977 5501..5839 +
1691679095.8568082-CDS-H-elongata_contig10977:5500..58391691679095.8568082-CDS-H-elongata_contig10977:5500..5839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10977 5501..5839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10977.786.1prot_H-elongata_contig10977.786.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10977 5501..5839 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10977.786.1

>prot_H-elongata_contig10977.786.1 ID=prot_H-elongata_contig10977.786.1|Name=mRNA_H-elongata_contig10977.786.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
QHYILFHSRTTERAVENDRPSFLRHRHRARACCARARGGGTATTASAGRR
QGIDQCVEKFCPRVTGGMAVLQTELLCGRCHVLDADRLGFLQALTNLFAS
SQRCKIFYLFCCT
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mRNA from alignment at H-elongata_contig10977:5501..5839+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10977.786.1 ID=mRNA_H-elongata_contig10977.786.1|Name=mRNA_H-elongata_contig10977.786.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig10977:5501..5839+ (Himanthalia elongata Himel1 dioecious)
CAGCATTATATTTTATTTCACAGTAGGACTACCGAGCGCGCTGTGGAGAA
CGATCGCCCATCCTTTCTACGTCACCGCCATAGAGCTCGAGCTTGTTGCG
CACGTGCTCGTGGCGGTGGTACTGCCACCACGGCGTCTGCTGGTCGACGT
CAGGGCATCGATCAATGTGTAGAAAAATTCTGTCCGCGTGTAACCGGGGG
GATGGCAGTCCTCCAGACCGAGCTTCTTTGCGGTCGATGCCATGTGCTTG
ACGCCGATCGACTCGGATTCCTGCAAGCCCTGACTAACCTTTTCGCGAGT
AGCCAGCGGTGCAAAATCTTTTATCTCTTTTGTTGCACG
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Coding sequence (CDS) from alignment at H-elongata_contig10977:5501..5839+

>mRNA_H-elongata_contig10977.786.1 ID=mRNA_H-elongata_contig10977.786.1|Name=mRNA_H-elongata_contig10977.786.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig10977:5501..5839+ (Himanthalia elongata Himel1 dioecious)
CAGCATTATATTTTATTTCACAGTAGGACTACCGAGCGCGCTGTGGAGAA
CGATCGCCCATCCTTTCTACGTCACCGCCATAGAGCTCGAGCTTGTTGCG
CACGTGCTCGTGGCGGTGGTACTGCCACCACGGCGTCTGCTGGTCGACGT
CAGGGCATCGATCAATGTGTAGAAAAATTCTGTCCGCGTGTAACCGGGGG
GATGGCAGTCCTCCAGACCGAGCTTCTTTGCGGTCGATGCCATGTGCTTG
ACGCCGATCGACTCGGATTCCTGCAAGCCCTGACTAACCTTTTCGCGAGT
AGCCAGCGGTGCAAAATCTTTTATCTCTTTTGTTGCACGCAGCATTATAT
TTTATTTCACAGTAGGACTACCGAGCGCGCTGTGGAGAACGATCGCCCAT
CCTTTCTACGTCACCGCCATAGAGCTCGAGCTTGTTGCGCACGTGCTCGT
GGCGGTGGTACTGCCACCACGGCGTCTGCTGGTCGACGTCAGGGCATCGA
TCAATGTGTAGAAAAATTCTGTCCGCGTGTAACCGGGGGGATGGCAGTCC
TCCAGACCGAGCTTCTTTGCGGTCGATGCCATGTGCTTGACGCCGATCGA
CTCGGATTCCTGCAAGCCCTGACTAACCTTTTCGCGAGTAGCCAGCGGTG
CAAAATCTTTTATCTCTTTTGTTGCACG
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