mRNA_H-elongata_contig109757.784.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig109757.784.1
Unique NamemRNA_H-elongata_contig109757.784.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Match: A0A7S2W925_9STRA (Casein kinase I n=3 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2W925_9STRA)

HSP 1 Score: 217 bits (552), Expect = 1.390e-66
Identity = 97/147 (65.99%), Postives = 121/147 (82.31%), Query Frame = 1
Query:   61 EQVLSRLELVHGQGFVHMDVKPDNFLVGLGDQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIERSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVEDLCRGLPTEFQWYLQYCR 501
            +Q+LSRLE VH + F+H DVKPDNFL+GLG +   I+IIDFGL K+Y+D  T +H+P R ++ LTGTARYAS+NTH+GIE+SRRDDLES GYVL+YF+RG LPWQGLKANTK++KYERIM  K + S E LC+G PTEF+ Y +YCR
Sbjct:  110 DQLLSRLEYVHTKSFIHRDVKPDNFLIGLGKRQNVIHIIDFGLAKKYRDPRTHQHIPYRENKNLTGTARYASINTHIGIEQSRRDDLESLGYVLMYFIRGSLPWQGLKANTKKQKYERIMDRKMSTSTEQLCKGFPTEFRSYFEYCR 256          
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Match: A0A1Z5K400_FISSO (Casein kinase I n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K400_FISSO)

HSP 1 Score: 215 bits (547), Expect = 5.980e-66
Identity = 96/147 (65.31%), Postives = 121/147 (82.31%), Query Frame = 1
Query:   61 EQVLSRLELVHGQGFVHMDVKPDNFLVGLGDQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIERSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVEDLCRGLPTEFQWYLQYCR 501
            +Q+LSRLE VH + F+H DVKPDNFL+GLG +   I+IIDFGL K+Y+D  + +H+P R ++ LTGTARYAS+NTH+GIE+SRRDDLES GYVL+YF+RG LPWQGLKANTK++KYERIM  K + S E LC+G PTEF+ Y +YCR
Sbjct:  110 DQLLSRLEYVHTKSFIHRDVKPDNFLIGLGKRQSVIHIIDFGLAKKYRDPRSHQHIPYRENKNLTGTARYASINTHIGIEQSRRDDLESLGYVLMYFIRGSLPWQGLKANTKKQKYERIMDRKMSTSTEQLCKGYPTEFRSYFEYCR 256          
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Match: A0A6H5JB94_9PHAE (Casein kinase I n=2 Tax=PX clade TaxID=569578 RepID=A0A6H5JB94_9PHAE)

HSP 1 Score: 214 bits (546), Expect = 1.020e-65
Identity = 96/147 (65.31%), Postives = 121/147 (82.31%), Query Frame = 1
Query:   61 EQVLSRLELVHGQGFVHMDVKPDNFLVGLGDQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIERSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVEDLCRGLPTEFQWYLQYCR 501
            +Q+LSRLE VH + F+H DVKPDNFL+GLG +   I+IIDFGL K+Y+D  T +H+P R ++ LTGTARYAS+NTH+GIE+SRRDDLES GYVL+YF+RG LPWQGLKANTK++KYERIM  K + S E LC+G P+EF+ Y +YCR
Sbjct:  110 DQLLSRLEYVHTKSFIHRDVKPDNFLIGLGKRQNIIHIIDFGLAKKYRDPRTHQHIPYRDNKNLTGTARYASINTHIGIEQSRRDDLESLGYVLMYFIRGSLPWQGLKANTKKQKYERIMDRKMSTSTEQLCKGYPSEFRSYFEYCR 256          
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Match: A0A7S3Q337_9STRA (Casein kinase I n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q337_9STRA)

HSP 1 Score: 213 bits (543), Expect = 3.740e-65
Identity = 95/147 (64.63%), Postives = 120/147 (81.63%), Query Frame = 1
Query:   61 EQVLSRLELVHGQGFVHMDVKPDNFLVGLGDQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIERSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVEDLCRGLPTEFQWYLQYCR 501
            +Q+L RLE VH + F+H DVKPDNFL+GLG +   I+IIDFGL K+Y+D  + +H+P R ++ LTGTARYAS+NTH+GIE+SRRDDLES GYVL+YF+RG LPWQGLKANTK++KYERIM  K + S E LC+G PTEF+ Y +YCR
Sbjct:  110 DQLLGRLEYVHTKSFIHRDVKPDNFLIGLGKRQSVIHIIDFGLAKKYRDPRSHQHIPYRENKNLTGTARYASINTHIGIEQSRRDDLESLGYVLMYFIRGSLPWQGLKANTKKQKYERIMDRKMSTSTEQLCKGYPTEFRSYFEYCR 256          
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Match: B8CG56_THAPS (Casein kinase I (Fragment) n=6 Tax=Bacillariophyta TaxID=2836 RepID=B8CG56_THAPS)

HSP 1 Score: 210 bits (535), Expect = 3.840e-65
Identity = 94/147 (63.95%), Postives = 119/147 (80.95%), Query Frame = 1
Query:   61 EQVLSRLELVHGQGFVHMDVKPDNFLVGLGDQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIERSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVEDLCRGLPTEFQWYLQYCR 501
            +Q+L RLE VH + F+H DVKPDNFL+GLG +   I+IIDFGL K+Y+D  + +H+P R ++ LTGTARYAS+NTH+GIE+SRRDDLES GYVL+YF+RG LPWQGLKANTK++KYERIM  K + S E LC+G  TEF+ Y +YCR
Sbjct:  110 DQLLGRLEYVHTKSFIHRDVKPDNFLIGLGKRQSVIHIIDFGLAKKYRDPRSHQHIPYRENKNLTGTARYASINTHIGIEQSRRDDLESLGYVLMYFIRGSLPWQGLKANTKKQKYERIMDRKMSTSTEQLCKGYATEFRSYFEYCR 256          
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Match: A0A5B6ZT04_DAVIN (Putative casein kinase I isoform delta-like (Fragment) n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B6ZT04_DAVIN)

HSP 1 Score: 208 bits (530), Expect = 4.720e-65
Identity = 92/147 (62.59%), Postives = 119/147 (80.95%), Query Frame = 1
Query:   61 EQVLSRLELVHGQGFVHMDVKPDNFLVGLGDQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIERSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVEDLCRGLPTEFQWYLQYCR 501
            +Q+++R+E VH + F+H D+KPDNFL+GLG +   +Y+IDFGL K+Y+D +T +H+P R ++ LTGTARYAS+NTHLGIE+SRRDDLES GYVL+YFLRG LPWQGLKA TK++KYE+I   K + S+E LCRG PTEF  Y  YCR
Sbjct:   47 DQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYVIDFGLAKKYRDSSTHQHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVSTSIEALCRGYPTEFASYFHYCR 193          
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Match: A0A7S2BH62_9STRA (Casein kinase I n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BH62_9STRA)

HSP 1 Score: 214 bits (544), Expect = 4.780e-65
Identity = 95/147 (64.63%), Postives = 121/147 (82.31%), Query Frame = 1
Query:   61 EQVLSRLELVHGQGFVHMDVKPDNFLVGLGDQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIERSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVEDLCRGLPTEFQWYLQYCR 501
            +Q+LSRLE VH + F+H DVKPDNFL+GLG +   I+IIDFGL K+Y+D  + +H+P R ++ LTGTARYAS+NTH+GIE+SRRDDLES GYVL+YF+RG LPWQGLKANTK++KYERIM  K + S E LC+G P+EF+ Y +YCR
Sbjct:  110 DQLLSRLEYVHTKSFIHRDVKPDNFLIGLGKRQNVIHIIDFGLAKKYRDPRSHQHIPYRENKNLTGTARYASINTHIGIEQSRRDDLESLGYVLMYFIRGSLPWQGLKANTKKQKYERIMDRKMSTSTEQLCKGFPSEFRSYFEYCR 256          
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Match: W7TS19_9STRA (Casein kinase I n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS19_9STRA)

HSP 1 Score: 212 bits (540), Expect = 6.220e-65
Identity = 95/147 (64.63%), Postives = 119/147 (80.95%), Query Frame = 1
Query:   61 EQVLSRLELVHGQGFVHMDVKPDNFLVGLGDQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIERSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVEDLCRGLPTEFQWYLQYCR 501
            +Q+LSRLE +H + F+H DVKPDNFL+GLG  H T+YIIDFGL KRY+D  T +H+  R  + LTGTARYAS+NTH+GIE+SRRDDLES GYV++YFLRG LPWQGLKA+TK++KYERI+  K   S E LC+G P+EF+ Y +YCR
Sbjct:  110 QQLLSRLEFLHTKSFIHRDVKPDNFLIGLGRHHNTVYIIDFGLAKRYRDPRTHKHIIYREHKNLTGTARYASINTHIGIEQSRRDDLESLGYVVMYFLRGSLPWQGLKAHTKKQKYERILERKMATSPEQLCKGFPSEFRSYFEYCR 256          
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Match: W2ZF72_PHYPR (Casein kinase I n=1 Tax=Phytophthora parasitica P10297 TaxID=1317064 RepID=W2ZF72_PHYPR)

HSP 1 Score: 210 bits (534), Expect = 7.950e-65
Identity = 91/147 (61.90%), Postives = 119/147 (80.95%), Query Frame = 1
Query:   61 EQVLSRLELVHGQGFVHMDVKPDNFLVGLGDQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIERSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVEDLCRGLPTEFQWYLQYCR 501
            +Q+L RLE  H + F+H DVKPDNFL+GLG + + +Y+IDFGL K+Y+D  T +H+P R ++ LTGTARYAS+NTH+GIE+SRRDDLE+ GYVL+YF+RG LPWQGLKANTK++KYE+IM  K N  +E LC+G P EF+ Y +YCR
Sbjct:   31 DQLLCRLEYCHSKNFIHRDVKPDNFLIGLGKRAQIVYVIDFGLAKKYRDPKTHQHIPYRENKNLTGTARYASINTHVGIEQSRRDDLEALGYVLMYFIRGSLPWQGLKANTKKQKYEKIMEKKMNTPIEVLCKGYPAEFRAYFEYCR 177          
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Match: UPI00081136E1 (casein kinase I-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI00081136E1)

HSP 1 Score: 209 bits (532), Expect = 8.130e-65
Identity = 94/148 (63.51%), Postives = 119/148 (80.41%), Query Frame = 1
Query:   61 EQVLSRLELVHGQGFVHMDVKPDNFLVGLGDQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIERSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVEDLCRGLPTEFQWYLQYCRD 504
            +Q++SR+E +H + ++H D+KPDNFL+GLGD+   +YIIDFGL KRY++  +  H+  RT + LTGTARYASLNTHLGIE+SRRDDLES GYVL+YF RG LPWQGLKANTK++KYERI   K + ++EDLCRG P EF  YL YCR+
Sbjct:  110 DQLISRIEFIHSRDYIHRDIKPDNFLMGLGDRGNLVYIIDFGLAKRYREPKSREHIRYRTGKNLTGTARYASLNTHLGIEQSRRDDLESLGYVLMYFNRGSLPWQGLKANTKRQKYERISEKKISTTLEDLCRGYPAEFIAYLTYCRE 257          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig109757.784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2W925_9STRA1.390e-6665.99Casein kinase I n=3 Tax=Ochrophyta TaxID=2696291 R... [more]
A0A1Z5K400_FISSO5.980e-6665.31Casein kinase I n=2 Tax=Fistulifera solaris TaxID=... [more]
A0A6H5JB94_9PHAE1.020e-6565.31Casein kinase I n=2 Tax=PX clade TaxID=569578 RepI... [more]
A0A7S3Q337_9STRA3.740e-6564.63Casein kinase I n=1 Tax=Chaetoceros debilis TaxID=... [more]
B8CG56_THAPS3.840e-6563.95Casein kinase I (Fragment) n=6 Tax=Bacillariophyta... [more]
A0A5B6ZT04_DAVIN4.720e-6562.59Putative casein kinase I isoform delta-like (Fragm... [more]
A0A7S2BH62_9STRA4.780e-6564.63Casein kinase I n=1 Tax=Dictyocha speculum TaxID=3... [more]
W7TS19_9STRA6.220e-6564.63Casein kinase I n=1 Tax=Nannochloropsis gaditana T... [more]
W2ZF72_PHYPR7.950e-6561.90Casein kinase I n=1 Tax=Phytophthora parasitica P1... [more]
UPI00081136E18.130e-6563.51casein kinase I-like n=1 Tax=Rhagoletis zephyria T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig109757contigH-elongata_contig109757:43..1959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.9
Seed ortholog evalue7.4e-54
Seed eggNOG ortholog2880.D7FMN1
Preferred namehhp1
KEGG koko:K02218,ko:K08959,ko:K14758
KEGG Pathwayko03008,ko04011,ko04340,ko04390,ko04392,ko04540,ko04710,map03008,map04011,map04340,map04390,map04392,map04540,map04710
GOsGO:0000003,GO:0000018,GO:0000045,GO:0000166,GO:0000228,GO:0000280,GO:0000407,GO:0000775,GO:0000776,GO:0000777,GO:0000779,GO:0000793,GO:0002097,GO:0002098,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004713,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005794,GO:0005815,GO:0005816,GO:0005829,GO:0005856,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006396,GO:0006399,GO:0006400,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006897,GO:0006906,GO:0006914,GO:0006950,GO:0006974,GO:0006996,GO:0007033,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0008033,GO:0008144,GO:0008150,GO:0008152,GO:0008360,GO:0008608,GO:0009056,GO:0009451,GO:0009893,GO:0009987,GO:0010467,GO:0010520,GO:0010564,GO:0010604,GO:0010638,GO:0010845,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016050,GO:0016070,GO:0016192,GO:0016236,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018108,GO:0018193,GO:0018209,GO:0018212,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0022414,GO:0022603,GO:0022604,GO:0022607,GO:0022613,GO:0023052,GO:0030100,GO:0030242,GO:0030427,GO:0030554,GO:0030999,GO:0031323,GO:0031325,GO:0031974,GO:0031981,GO:0032386,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032991,GO:0033043,GO:0033551,GO:0033554,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0036211,GO:0038083,GO:0040020,GO:0042254,GO:0042273,GO:0042274,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045132,GO:0045143,GO:0045787,GO:0045807,GO:0045836,GO:0045911,GO:0045935,GO:0046483,GO:0046777,GO:0048193,GO:0048259,GO:0048260,GO:0048280,GO:0048284,GO:0048285,GO:0048518,GO:0048522,GO:0048583,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051054,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051276,GO:0051316,GO:0051321,GO:0051445,GO:0051446,GO:0051455,GO:0051716,GO:0051726,GO:0051783,GO:0051785,GO:0060255,GO:0060341,GO:0060627,GO:0060628,GO:0060631,GO:0060903,GO:0061024,GO:0061025,GO:0061919,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070192,GO:0070925,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090068,GO:0090174,GO:0090304,GO:0097159,GO:0097367,GO:0098657,GO:0098687,GO:0098813,GO:0140013,GO:0140096,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1903046,GO:1903827,GO:1905037,GO:2000241,GO:2000243,GO:2000369,GO:2000370,GO:2001020,GO:2001159
EggNOG free text desc.protein kinase activity
EggNOG OGsKOG1164@1,KOG1164@2759
EC2.7.11.1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03016,ko03036
Hectar predicted targeting categoryother localisation
Exons4
Model size507
Cds size504
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig109757.784.1prot_H-elongata_contig109757.784.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig109757 45..1959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929623.762068-CDS-H-elongata_contig109757:44..791622929623.762068-CDS-H-elongata_contig109757:44..79Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109757 45..79 -
1691679095.687088-CDS-H-elongata_contig109757:44..791691679095.687088-CDS-H-elongata_contig109757:44..79Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109757 45..79 -
1622929623.7736492-CDS-H-elongata_contig109757:787..9241622929623.7736492-CDS-H-elongata_contig109757:787..924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109757 788..924 -
1691679095.7024333-CDS-H-elongata_contig109757:787..9241691679095.7024333-CDS-H-elongata_contig109757:787..924Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109757 788..924 -
1622929623.7853165-CDS-H-elongata_contig109757:1424..15721622929623.7853165-CDS-H-elongata_contig109757:1424..1572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109757 1425..1572 -
1691679095.71592-CDS-H-elongata_contig109757:1424..15721691679095.71592-CDS-H-elongata_contig109757:1424..1572Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109757 1425..1572 -
1622929623.8014843-CDS-H-elongata_contig109757:1775..19591622929623.8014843-CDS-H-elongata_contig109757:1775..1959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109757 1776..1959 -
1691679095.7261813-CDS-H-elongata_contig109757:1775..19591691679095.7261813-CDS-H-elongata_contig109757:1775..1959Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig109757 1776..1959 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig109757.784.1

>prot_H-elongata_contig109757.784.1 ID=prot_H-elongata_contig109757.784.1|Name=mRNA_H-elongata_contig109757.784.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp
IVCVRPRPRGVGWGGAPGRREQVLSRLELVHGQGFVHMDVKPDNFLVGLG
DQHETIYIIDFGLTKRYKDVNTGRHLPCRTDQILTGTARYASLNTHLGIE
RSRRDDLESFGYVLLYFLRGDLPWQGLKANTKQEKYERIMYGKKNVSVED
LCRGLPTEFQWYLQYCRD
back to top

mRNA from alignment at H-elongata_contig109757:43..1959-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig109757.784.1 ID=mRNA_H-elongata_contig109757.784.1|Name=mRNA_H-elongata_contig109757.784.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1917bp|location=Sequence derived from alignment at H-elongata_contig109757:43..1959- (Himanthalia elongata Himel1 dioecious)
ATCGTCTGCGTGCGCCCGCGCCCGCGCGGTGTGGGGTGGGGGGGGGCGCC GGGGCGGAGAGAGCAGGTACTGAGCCGATTAGAACTCGTTCACGGCCAAG GGTTCGTCCATATGGACGTCAAACCGGACAACTTCCTGGTGGGACTAGGA GATCAGCATGAGACGATATACATCATCGACTTCGGTGAGCAAAAAACAAC AACACATGTGTCACGGGACCGGGGTAAATAGAAGCGGGGAGCGGGAGTAG GCAGGTACAGACAGCAGCCAGAAGATGGGAGAGGGAAACCCTGCTGTGGA AGATAGAATATTTTTCAGCTTCGCGGAAGATCGAGGTTCCCCCCTCTCTC TCCCTTTCTCTCTCCGTTCCTCGCGCCCCCGGGACAGGTTTGACAAAGAG GTACAAGGATGTAAACACTGGCAGGCACTTGCCCTGCCGAACGGATCAGA TACTCACGGGGACGGCGCGGTATGCGTCGCTCAACACTCACCTGGGTATC GAGCGTAGCCGGCGGGACGATCTCGAATCGTTCGGGTGAGTGAGAGCGCC CTCTGCCCCCCCCCAACCCCTCTGGCGTCCTCCGTGAAGATTAAGTCTTT TAAAATGCTTTGATGCTGACACCTTTGCGGTTAGATTGCGTGGGTTTCGT CGCGCCGTGTTTAATGACAGTGTCCCATGTTTTCGCGAAAGGGTTAGGCC GGGGTTCTTTTACTTTGTCTGAGGGGCCGAAAAGTTCACCAATGTCGTGT GTTTGGTTCTTGTCTTTTGTTCGATCACGTAACCGTCCACGACTTATGTT TTTTTTCTCCTTGTCGTCACTTCCTGTTTGAAAACGATACACACGTACAC GCACATCCCCCATTTGGGGGATTAATGTGTGTAACCCAGAGACAGTGCCG TGGATTGTGCGGTTATAGGCAATTTAATAATACACACACACACACATGGT GACGTCATCTCAAGAAACGCGTGTCTCTTTCTCTCTCTTGTCCGTCGGTC TACACTATGTTCTGGTTCGACCGCATTGGCGGCAGTTACGTTCTCCTGTA TTTTCTGCGGGGGGATCTCCCGTGGCAAGGGCTCAAGGCGAACACCAAGC AGGAGAAGTACGAGCGTATAATGTACGGCAAGAAGAACGTCTCGGTCGAG GACCTTTGCAGGGGACTACCAAGTGAGCAATAACTCCCGCACGACACTGT CGACCCCTTGGAACGATCGACCCCTCCCCCTTAACGCGGGCCTCTGGTGG TTGATCGTGAGATGAAGTCCACCAGCCTGGGTGGGGATAACGAGTGGGCT GACACGGAATGGGACTGCCGAACTCATCTCGCAAGCCCAAATTATCGGGC GCGAGCGGGGACAAGGAAAAATAAATTCCCCTGTTCAGCTGACCACGAGC AAGATTGTCAACCATATCCTGTTGATCCATACTATAGCCTATATAATATA TAATATGTGATAACCATATACACACACACACACAAATAATGTTAGTGGAT TCCAACGGAAATCTAACGTTTTTTGTCGACATGTTTCCGTTGAAATCGCG TTCGAGCGGGGGGCGGGGGGGGGGGCATGTAAATTGTCCCGTGTTACCCC CACGCCCCGATGACCTCGGGTGGCAACATTAAGGCTAAACATATTTTCTC CGATGACGCGAAGCTACCTCTCTCCGCGCAACCATGATGTGCCTCTTCTG GCTATGTCCACGTTAAATCATTATGTGATCAACGACCGGTTGGAATCCTC TTTTCACCAAAACAAGAATCGGATGTGAAATACAGAAGCTCTCCGCAACA TGACCGTGACATGGCGGTCTTACTGCCTATTTACTTCTCCCCTCCCCTCT CCCCTCCCTCCAAAACACTTGCCGCTGCAGCGGAGTTCCAGTGGTATCTG CAGTATTGCAGGGATCT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig109757:43..1959-

>mRNA_H-elongata_contig109757.784.1 ID=mRNA_H-elongata_contig109757.784.1|Name=mRNA_H-elongata_contig109757.784.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig109757:43..1959- (Himanthalia elongata Himel1 dioecious)
ATCGTCTGCGTGCGCCCGCGCCCGCGCGGTGTGGGGTGGGGGGGGGCGCC
GGGGCGGAGAGAGCAGGTACTGAGCCGATTAGAACTCGTTCACGGCCAAG
GGTTCGTCCATATGGACGTCAAACCGGACAACTTCCTGGTGGGACTAGGA
GATCAGCATGAGACGATATACATCATCGACTTCGATCGTCTGCGTGCGCC
CGCGCCCGCGCGGTGTGGGGTGGGGGGGGGCGCCGGGGCGGAGAGAGCAG
GTACTGAGCCGATTAGAACTCGTTCACGGCCAAGGGTTCGTCCATATGGA
CGTCAAACCGGACAACTTCCTGGTGGGACTAGGAGATCAGCATGAGACGA
TATACATCATCGACTTCGGTTTGACAAAGAGGTACAAGGATGTAAACACT
GGCAGGCACTTGCCCTGCCGAACGGATCAGATACTCACGGGGACGGCGCG
GTATGCGTCGCTCAACACTCACCTGGGTATCGAGCGTAGCCGGCGGGACG
ATCTCGAATCGTTCGGGTTTGACAAAGAGGTACAAGGATGTAAACACTGG
CAGGCACTTGCCCTGCCGAACGGATCAGATACTCACGGGGACGGCGCGGT
ATGCGTCGCTCAACACTCACCTGGGTATCGAGCGTAGCCGGCGGGACGAT
CTCGAATCGTTCGGTTACGTTCTCCTGTATTTTCTGCGGGGGGATCTCCC
GTGGCAAGGGCTCAAGGCGAACACCAAGCAGGAGAAGTACGAGCGTATAA
TGTACGGCAAGAAGAACGTCTCGGTCGAGGACCTTTGCAGGGGACTACCA
ATTACGTTCTCCTGTATTTTCTGCGGGGGGATCTCCCGTGGCAAGGGCTC
AAGGCGAACACCAAGCAGGAGAAGTACGAGCGTATAATGTACGGCAAGAA
GAACGTCTCGGTCGAGGACCTTTGCAGGGGACTACCAACGGAGTTCCAGT
GGTATCTGCAGTATTGCAGGGATCGGAGTTCCAGTGGTATCTGCAGTATT
GCAGGGAT
back to top