mRNA_H-elongata_contig10969.781.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig10969.781.1
Unique NamemRNA_H-elongata_contig10969.781.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Match: D7G7Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Z8_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 1.970e-95
Identity = 202/300 (67.33%), Postives = 231/300 (77.00%), Query Frame = 1 
Query: 1189 ALQKAASSAQVAVSLGPTENQLSGTLSGGNKRKLSLAVALIGEPPVLLLDEPSSGMDPGARRSMWEVISSLSATRSVILTTHSMEECEAVCDRLGIMVGGRLRCLGTSQHLKGRFGGGYSIEVRCPSTSMPRVTDMIASLSPLARLEEMHPTLAKFSIPQGGSKSSGAKEIRESGGGKCSS---SSGELSLSTAFETIEASKEELQLWDYSISQATLETIFMSFAKDQEEETANVPGVSYTDS----TNLGREARAVPVV--PRRDHRTAGRRVGQQPSPAPS-MDVEMGLMGSSRGYSR 2058
            AL +AA++   AVSLGPTENQ +GTLSGGNKRKLSLAVALIG PPVLLLDEPSSGMDPGARRSMWEVISSLS +RSVI+TTHSMEECEAVCDRLGIMVGGRLRC+GTSQHLKGRFGGGYSIEVRCPS SMP+VT+M+ +LSPLARL+EMHP+LAKFS+P  G    G +    +G G+  +   ++G LSLS AFETIE+ K ELQ+WDYSISQATLETIFMSFAK QEEE A+VPGV YTDS     + G +   +             G  V Q  S +P  MDVEMG +G  +  SR
Sbjct: 1885 ALHEAAAATMSAVSLGPTENQTAGTLSGGNKRKLSLAVALIGGPPVLLLDEPSSGMDPGARRSMWEVISSLSRSRSVIVTTHSMEECEAVCDRLGIMVGGRLRCIGTSQHLKGRFGGGYSIEVRCPSESMPKVTEMVGALSPLARLDEMHPSLAKFSVPAAGEL--GDRPPARTGFGEGVTGEVATGGLSLSKAFETIESRKTELQVWDYSISQATLETIFMSFAKHQEEEVASVPGVQYTDSDAGNVDAGEQHHGLSSGGNSHSGDGDGGGDVRQGRSRSPQLMDVEMGRLGGGKCRSR 2182
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BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Match: A0A6H5KGR1_9PHAE (ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGR1_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.720e-57
Identity = 114/133 (85.71%), Postives = 121/133 (90.98%), Query Frame = 1 
Query: 1189 ALQKAASSAQVAVSLGPTENQLSGTLSGGNKRKLSLAVALIGEPPVLLLDEPSSGMDPGARRSMWEVISSLSATRSVILTTHSMEECEAVCDRLGIMVGGRLRCLGTSQHLKGRFGGGYSIEVRCPSTSMPRV 1587
            AL +AA++A  AVSLGPTENQ +GTLSGGNKRKLSLAVALIG PPVLLLDEPSSGMDPGARRSMWEVISSLSA+RSVILTTHSMEECEAVCDRLGIMVGGRLRC+GTSQHLKGRFGGGYSIEV     S P +
Sbjct:  394 ALYEAAAAAMSAVSLGPTENQTAGTLSGGNKRKLSLAVALIGGPPVLLLDEPSSGMDPGARRSMWEVISSLSASRSVILTTHSMEECEAVCDRLGIMVGGRLRCIGTSQHLKGRFGGGYSIEVGVEYNSKPLI 526
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BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Match: A0A7S3HGW2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HGW2_9STRA)

HSP 1 Score: 194 bits (493), Expect = 4.780e-50
Identity = 110/216 (50.93%), Postives = 139/216 (64.35%), Query Frame = 1 
Query: 1258 GTLSGGNKRKLSLAVALIGEPPVLLLDEPSSGMDPGARRSMWEVISSLSATRSVILTTHSMEECEAVCDRLGIMVGGRLRCLGTSQHLKGRFGGGYSIEVRCPSTSMPRVTDMIASLSP---LARLEEMHPTLAKFSIPQGGSKSSGAKEIRESGGGKCSSSSGELSLSTAFETIEASKEELQLWDYSISQATLETIFMSFAKDQEEETANVPGVS 1896
            GT SGGNKRKLSLAVALIG+P VL LDEPS+GMDP ARR+MW VI  +SA R V+L THSMEE EA+C R+G+MV GR++C+G++QHLK RFG GY +E+R   T   RV D IA        A +EE+H    +  + +                        +L L+ AF  +E +K  LQ+ DY+ISQ TLE +F+ FAKDQEEET +V GVS
Sbjct:  175 GTYSGGNKRKLSLAVALIGDPRVLFLDEPSTGMDPEARRNMWTVIEQVSAERCVVLVTHSMEEVEALCTRMGVMVSGRMQCIGSAQHLKSRFGLGYQVEIR---TLPARVQDCIALCEAQMLAAVVEEVHGGYVRLKVSK------------------------DLDLAAAFSALEHNKASLQILDYNISQCTLEQVFLKFAKDQEEETGHVGGVS 363
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BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Match: A0A7S2FHN6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2FHN6_9EUKA)

HSP 1 Score: 189 bits (479), Expect = 1.040e-49
Identity = 99/210 (47.14%), Postives = 134/210 (63.81%), Query Frame = 1 
Query: 1225 VSLGPTENQLSGTLSGGNKRKLSLAVALIGEPPVLLLDEPSSGMDPGARRSMWEVISSLSATRSVILTTHSMEECEAVCDRLGIMVGGRLRCLGTSQHLKGRFGGGYSIEVRCPSTSMPRVTDMIASLSPLARLEEMHPTLAKFSIPQGGSKSSGAKEIRESGGGKCSSSSGELSLSTAFETIEASKEELQLWDYSISQATLETIFMSFA 1854
            V+L P  +++ G+ SGGNKRKLSLA+AL+G P V+ LDEPSSGMDP +RR MW++I      RS++LTTHSMEECEA+C R+GIM  GR +CLG  QHLK ++GGGY++E+R   +    + + +  L P +RLEE H    KF +P  G                       LSL+T F+ +E+ KE L + DYS SQ +LE+IF+S A
Sbjct:   72 VTLTPYADRVCGSYSGGNKRKLSLAIALVGSPAVIFLDEPSSGMDPKSRRKMWDIIMKERTLRSIVLTTHSMEECEALCTRIGIMTAGRFQCLGGQQHLKSKYGGGYTLELRVDDSLAAGLPEKMTGLFPGSRLEEAHAGKLKFELPTAG-----------------------LSLATVFQKMESHKEALGVLDYSASQPSLESIFLSLA 258
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BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Match: A0A836CK00_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK00_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.770e-49
Identity = 108/215 (50.23%), Postives = 140/215 (65.12%), Query Frame = 1 
Query: 1225 VSLGPTENQLSGTLSGGNKRKLSLAVALIGEPPVLLLDEPSSGMDPGARRSMWEVISSLSA---TRSVILTTHSMEECEAVCDRLGIMVGGRLRCLGTSQHLKGRFGGGYSIEVRCPSTSMPRVTDMIASLSPLARLEEMHPTLAKFSIPQGGSKSSGAKEIRESGGGKCSSSSGELSLSTAFETIEASKEELQLWDYSISQATLETIFMSFAKD 1860
            V L    ++ +GTLSGG+KRKLSLA+AL G+P V LLDEPS GMDP ++R MW VI+ L +   TRS++LTTHSMEECEA+C R+GIM  G+LRCLG+ QHLK RFGG YSIE++        V  ++  LS  A LEE H T  K+S+P                      +  +LSL+ AF TIEA ++EL++  YSISQ++LE IF+  AKD
Sbjct:   78 VGLQEYADRRAGTLSGGSKRKLSLAIALTGQPAVALLDEPSCGMDPVSKRRMWNVIAGLRSSGRTRSIVLTTHSMEECEALCTRVGIMRDGQLRCLGSCQHLKSRFGGSYSIELQFKEGFAEGVKALVPELSRDAVLEEEHETSVKYSVP----------------------ARSQLSLADAFGTIEARRQELEIVTYSISQSSLEQIFVGIAKD 270
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BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Match: A0A7S1UEC4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEC4_9STRA)

HSP 1 Score: 188 bits (477), Expect = 6.310e-47
Identity = 113/221 (51.13%), Postives = 133/221 (60.18%), Query Frame = 1 
Query: 1267 SGGNKRKLSLAVALIGEPPVLLLDEPSSGMDPGARRSMWEVISSLSATR--SVILTTHSMEECEAVCDRLGIMVGGRLRCLGTSQHLKGRFGGGYSIEVR------CPSTSMPRVTDMIASLSPLARLEEMHPTLAKFSIPQGGSKSSGAKEIRESGGGKCSSSSGELSLSTAFETIEASKEELQLWDYSISQATLETIFMSFAKDQEEETANVPGVSYTD 1905
            SGGNKRKLSL VALIG+P VL LDEPS+GMDPGARRSMW  I +LS  R  ++ILTTHSMEECEA+C R+GIMVGGRLRCLG+SQHLK RF   Y +E R       P  +  R   + A L P AR+ E H    + S+P                          + L   FE IEA +EE  + +YS+SQ TLE +FM FAK Q EE   V GV Y D
Sbjct:  342 SGGNKRKLSLGVALIGDPEVLFLDEPSTGMDPGARRSMWSCIEALSRRRKITIILTTHSMEECEALCTRIGIMVGGRLRCLGSSQHLKQRFLHAYEVEFRIEEAAGAPGGAFERF--LAARLGPGARVVERHSPHCRVSLPGTA-----------------------MPLGRIFEAIEAHQEEAGVLEYSVSQGTLEQVFMGFAKRQREERGQVAGVVYED 537
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BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Match: A0A6A7G9L0_9CRUS (ABC transporter A family (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G9L0_9CRUS)

HSP 1 Score: 188 bits (477), Expect = 7.600e-47
Identity = 110/215 (51.16%), Postives = 141/215 (65.58%), Query Frame = 1 
Query: 1231 LGPTEN--QLSGTLSGGNKRKLSLAVALIGEPPVLLLDEPSSGMDPGARRSMWEVISSLSATRSVILTTHSMEECEAVCDRLGIMVGGRLRCLGTSQHLKGRFGGGYSIEVRCPSTSMPRVTDMIASLSPLARLEEMHPTLAKFSIPQGGSKSSGAKEIRESGGGKCSSSSGELSLSTAFETIEASKEELQLWDYSISQATLETIFMSFAKDQEE 1869
            LG TE+  ++SG  SGGNKRKLSLA+ALIG+P V+ LDEPS+GMDP ARRSMW+VISS+S  RSVILTTH M+ECEA+C+R+ IM  G LRCLGT QHLK RFG GY +E+     ++ RV   +        LEE H    ++ I         AKE              ++SLS+ F  IEA+K +L++ DYSISQ TLE IF+S A++ +E
Sbjct:  327 LGLTEHADKISGAYSGGNKRKLSLAIALIGDPSVVFLDEPSTGMDPVARRSMWDVISSISEERSVILTTHLMDECEALCNRICIMTSGNLRCLGTIQHLKNRFGQGYHMEISTSEDAIDRVRKFVEESFEGVTLEEFHSGRLQYHI---------AKE--------------KVSLSSIFTLIEANKIQLEIEDYSISQNTLEQIFVSIARNDDE 518
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BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Match: A0A812YJT3_SYMMI (ABCA1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812YJT3_SYMMI)

HSP 1 Score: 178 bits (451), Expect = 8.230e-47
Identity = 107/205 (52.20%), Postives = 133/205 (64.88%), Query Frame = 1 
Query: 1258 GTLSGGNKRKLSLAVALIGEPPVLLLDEPSSGMDPGARRSMWEVISSLSATRSVILTTHSMEECEAVCDRLGIMVGGRLRCLGTSQHLKGRFGGGYSIEVRCPSTSMPRVTDMIASLSPLARLEEMHPTLAKFSIPQGGSKSSGAKEIRESGGGKCSSSSGELSLSTAFETIEASKEELQLWDYSISQATLETIFMSFAKDQEEE 1872
            G+ SGGNKRKLSLAVAL+G P VL LDEPSSGMDP +RR MWEVI+ +SA R V++TTHSMEECEA+C R+GIMV GRL+CLG+  HLK RFG GY ++V   S    R      SLS  A   E    LA   + +   + +G   +R S          E+ L+ AF  +E  K+   + DYS+SQ TLE IF++FAKDQEEE
Sbjct:   43 GSYSGGNKRKLSLAVALVGNPKVLFLDEPSSGMDPESRRHMWEVIAQVSADRFVVMTTHSMEECEAICTRVGIMVSGRLQCLGSCHHLKERFGAGYQVDVSTNSDEKRR-----ESLS--AIFAEKDSALAGAVVEE---EHAGYFRLRVSN---------EVDLAQAFTLLENIKQRGLVLDYSVSQGTLEQIFINFAKDQEEE 228
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BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Match: A0A7S1UE30_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE30_9STRA)

HSP 1 Score: 192 bits (488), Expect = 8.630e-46
Identity = 115/228 (50.44%), Postives = 139/228 (60.96%), Query Frame = 1 
Query: 1246 NQLSGTLSGGNKRKLSLAVALIGEPPVLLLDEPSSGMDPGARRSMWEVISSLSATR--SVILTTHSMEECEAVCDRLGIMVGGRLRCLGTSQHLKGRFGGGYSIEVR------CPSTSMPRVTDMIASLSPLARLEEMHPTLAKFSIPQGGSKSSGAKEIRESGGGKCSSSSGELSLSTAFETIEASKEELQLWDYSISQATLETIFMSFAKDQEEETANVPGVSYTD 1905
            ++ +G+LSGGNKRKLSL VALIG+P VL LDEPS+GMDPGARRSMW  I +LS  R  ++ILTTHSMEECEA+C R+GIMVGGRLRCLG+SQHLK RF   Y +E R       P  +  R   + A L P AR+ E H    + S+P                          + L   FE IEA +EE  + +YS+SQ TLE +FM FAK Q EE   V GV Y D
Sbjct: 1106 DKAAGSLSGGNKRKLSLGVALIGDPEVLFLDEPSTGMDPGARRSMWSCIEALSRRRKITIILTTHSMEECEALCTRIGIMVGGRLRCLGSSQHLKQRFLHAYEVEFRIEEAAGAPGGAFERF--LAARLGPGARVVERHSPHCRVSLPGTA-----------------------MPLGRIFEAIEAHQEEAGVLEYSVSQGTLEQVFMGFAKRQREERGQVAGVVYED 1308
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BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Match: A0A7R9JMP7_TIMGE (Hypothetical protein (Fragment) n=2 Tax=Timema TaxID=61471 RepID=A0A7R9JMP7_TIMGE)

HSP 1 Score: 191 bits (484), Expect = 1.180e-45
Identity = 103/214 (48.13%), Postives = 141/214 (65.89%), Query Frame = 1 
Query: 1225 VSLGPTENQLSGTLSGGNKRKLSLAVALIGEPPVLLLDEPSSGMDPGARRSMWEVISSLSAT-RSVILTTHSMEECEAVCDRLGIMVGGRLRCLGTSQHLKGRFGGGYSIEVRCPSTSMPRVTDMIASLSPLARLEEMHPTLAKFSIPQGGSKSSGAKEIRESGGGKCSSSSGELSLSTAFETIEASKEELQLWDYSISQATLETIFMSFAKDQ 1863
            + LG  E+ L+GTLSGGNKRKLS A+ALIG+PP++ +DEP+SGMDP ARR +W  IS + A+ RSV+LT+HSMEECEA+C R+ IMV G  +CLG+SQHLK +FG GY++ VRC S +   V++ I S+ P A L +MH T  +F + QG                        L+L+  F  ++ +K+   + DYS+SQ TLE +FM FAK+Q
Sbjct:  754 LGLGHYEHALAGTLSGGNKRKLSTAIALIGDPPLVFMDEPTSGMDPKARRFLWSCISDVVASGRSVVLTSHSMEECEALCTRITIMVNGAFKCLGSSQHLKSKFGRGYTLIVRCKSDTCGSVSEHITSILPHATLTDMHHTQLQFELAQGA-----------------------LTLALVFRMMQQAKQNGLIEDYSLSQTTLEEVFMRFAKEQ 944
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10969.781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Z8_ECTSI1.970e-9567.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGR1_9PHAE1.720e-5785.71ABC protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A7S3HGW2_9STRA4.780e-5050.93Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2FHN6_9EUKA1.040e-4947.14Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A836CK00_9STRA1.770e-4950.23P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1UEC4_9STRA6.310e-4751.13Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6A7G9L0_9CRUS7.600e-4751.16ABC transporter A family (Fragment) n=1 Tax=Hirond... [more]
A0A812YJT3_SYMMI8.230e-4752.20ABCA1 protein n=1 Tax=Symbiodinium microadriaticum... [more]
A0A7S1UE30_9STRA8.630e-4650.44Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9JMP7_TIMGE1.180e-4548.13Hypothetical protein (Fragment) n=2 Tax=Timema Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10969contigH-elongata_contig10969:2..5191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score276.6
Seed ortholog evalue1.2e-71
Seed eggNOG ortholog2880.D7G7Z8
Preferred nameABCA6
KEGG koko:K05643,ko:K05645
KEGG TC3.A.1.211
KEGG Pathwayko02010,map02010
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0006810,GO:0006869,GO:0008150,GO:0009653,GO:0010876,GO:0015399,GO:0015405,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022804,GO:0022857,GO:0030587,GO:0031288,GO:0032502,GO:0033036,GO:0042623,GO:0042626,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043492,GO:0044424,GO:0044464,GO:0048856,GO:0051179,GO:0051234,GO:0051703,GO:0051704,GO:0055085,GO:0071702,GO:0090702,GO:0099120
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1131@1,KOG0059@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionP-loop containing nucleoside triphosphate hydrolase
Ec32 orthologEc-06_009590.2
Exons4
Model size4062
Cds size738
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10969.781.1prot_H-elongata_contig10969.781.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig10969 1973..3838 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929623.4049234-UTR-H-elongata_contig10969:1..19721622929623.4049234-UTR-H-elongata_contig10969:1..1972Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10969 2..1972 -
1691679095.5803728-UTR-H-elongata_contig10969:1..19721691679095.5803728-UTR-H-elongata_contig10969:1..1972Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10969 2..1972 -
1622929623.4954097-UTR-H-elongata_contig10969:3838..51911622929623.4954097-UTR-H-elongata_contig10969:3838..5191Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10969 3839..5191 -
1691679095.629798-UTR-H-elongata_contig10969:3838..51911691679095.629798-UTR-H-elongata_contig10969:3838..5191Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig10969 3839..5191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929623.4208527-CDS-H-elongata_contig10969:1972..22661622929623.4208527-CDS-H-elongata_contig10969:1972..2266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10969 1973..2266 -
1691679095.5949364-CDS-H-elongata_contig10969:1972..22661691679095.5949364-CDS-H-elongata_contig10969:1972..2266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10969 1973..2266 -
1622929623.4397514-CDS-H-elongata_contig10969:2645..28881622929623.4397514-CDS-H-elongata_contig10969:2645..2888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10969 2646..2888 -
1691679095.6034257-CDS-H-elongata_contig10969:2645..28881691679095.6034257-CDS-H-elongata_contig10969:2645..2888Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10969 2646..2888 -
1622929623.461187-CDS-H-elongata_contig10969:3269..34501622929623.461187-CDS-H-elongata_contig10969:3269..3450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10969 3270..3450 -
1691679095.6116722-CDS-H-elongata_contig10969:3269..34501691679095.6116722-CDS-H-elongata_contig10969:3269..3450Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10969 3270..3450 -
1622929623.477606-CDS-H-elongata_contig10969:3818..38381622929623.477606-CDS-H-elongata_contig10969:3818..3838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10969 3819..3838 -
1691679095.6216533-CDS-H-elongata_contig10969:3818..38381691679095.6216533-CDS-H-elongata_contig10969:3818..3838Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig10969 3819..3838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig10969.781.1

>prot_H-elongata_contig10969.781.1 ID=prot_H-elongata_contig10969.781.1|Name=mRNA_H-elongata_contig10969.781.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp
MDPGARRSMWEVISSLSATRSVILTTHSMEECEAVCDRLGIMVGGRLRCL
GTSQHLKGRFGGGYSIEVRCPSTSMPRVTDMIASLSPLARLEEMHPTLAK
FSIPQGGSKSSGAKEIRESGGGKCSSSSGELSLSTAFETIEASKEELQLW
DYSISQATLETIFMSFAKDQEEETANVPGVSYTDSTNLGREARAVPVVPR
RDHRTAGRRVGQQPSPAPSMDVEMGLMGSSRGYSRLMVTETTEIE*
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mRNA from alignment at H-elongata_contig10969:2..5191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig10969.781.1 ID=mRNA_H-elongata_contig10969.781.1|Name=mRNA_H-elongata_contig10969.781.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5190bp|location=Sequence derived from alignment at H-elongata_contig10969:2..5191- (Himanthalia elongata Himel1 dioecious)
CTGCTGCCGCTGATGACGGTGAACGAGACGCTGCTCTTGTACGGCGGCTT
GAAAGGTGTCGGTTTGGAAAGCCTCGGAGGTAATGTTCGGGATCGTGGTC
TCCGGTGGAGAGGTGTGTGTGTATATGTATGTGTAATGGATTAGCGTAGG
ATAGGCAGGAACAGAAAGGACATGTGAGGTAGGGGCATGTTTAGGAAGGA
GGACTTGGGCTCGCCGCTATAAATACGATGTTGTGATTTAAAAATCGGAG
TGTTTCGTTGCGTATTGGACGACCGCCTTGCAGTCTTGAGAAAAATATAG
TATGCGTATAGTATGCATATAGCCGCTTTTTCCGAGTTTTATCCAGCATT
GTGGTTTCCTTTTCGTATAGTATATTATAGAAAGTATGTTGTGTTTTTTA
TTTTTAAAAACTTGGAACACATTCCAACCATCCGAACATCCACACCTTCT
TAGCGCCGTGAGAGGTGCCATCCAAGGGACCAACTATCGTCAGGTTCAAA
TGTTTACATTACGACCTTTGTTCCGGATGGTGTTTTTTCTTATACCTTGT
GACCACGGGCTGGATTTTGATATAGGCTTATGTGACAAATCAACCAAAGT
CCGTAAATCAATCAGTAAATAAAATGTCTTCGAGAGAGTAATGGCAGAAT
GCTAAAGCCTCTCATATCACCTACGGTAGCCTATTTAATAAATACAAGTT
AAAGTTAAAATATGCCATAAAGTATATTATTTTTAAAAAGAAAGAAAACG
CGTCGGAAAAAAAATGGGCATAGACAACGGTGCCCTGCGCTGCCCCTGCC
CCTGTGTCGATGTGTTTAGCCGTGGGTAAATGTGGCGATGTGACTTCGGG
GTCGTGGAAAGTATAATTGACACCAAATTACACCAATTGGCATTAACTGA
CAGTTATAATTAATGGTATTGATTATTGTTAAAGGGGCATTTATTAAAAC
TATTTGACATTATTTGATATAATTAATTGGTATCAAGCGACATTTATCGG
CAGTAACTGGAATCAGTTAAAGGTTGCGACGCAAGTGCCGTATTCCGATA
TTTTGGCCAACACCCGTCCATAACACAATAGCACAAAACAGTCTGAAGAC
ATATAGAGCATATAGAGCAACTACTCGGCACGACTCTTGTTGCCTTCAAT
CTCTCTCTCTCAATTGTCTAGGCGCGGGGAGTTATGGCGCACTCCAAAAG
GCGGCGTCATCAGCGCAGGTTGCTGTCAGCCTAGGCCCTACCGAAAACCA
ACTGTCGGGGACCCTCAGCGGCGGCAACAAACGCAAGCTCTCCCTAGCCG
TCGCCCTGATCGGAGAGCCGCCGGTGCTACTGCTAGACGAGCCCAGCTCG
GGGATGGATCCCGGAGCCAGGAGGTAAAAAAAGCACGGGTTGGGGTTGGA
TGTTAGTAAGTTTACCGTCGCCGCTAGCAAATTTAGGGAGCCTTGGATCT
GGTCAATGTTTGGAGTATACTCCTGGCAAGAAAGGTGAGGAGTTTTTTTG
GGGGGGGGAGAGAGTAGGAGTTTTTTTTTTTTTAAACAAGTTATTATTTT
TGTGTTTTAGAAAATTTCGCCTTTTGTTGCTTTTGTGTTTTTTGTCTGTG
TGTGTGTGTATTTTTCTATTTGTTGGTTGATTTTCATTTTTCATTTTTTT
TTTGTACTTCAAAAGTGTAACAAACGAATTTTCCTTGGACTTGTTTGCCA
CCCTTAACCCTTACTGTACCACCGGTGGGGATCGGATTCAGGTCGATGTG
GGAGGTGATATCGTCCCTTTCGGCGACCCGCAGTGTCATTCTCACAACCC
ACTCCATGGAAGAGTGCGAGGCCGTATGCGACAGGCTGGGCATCATGGTC
GGCGGGAGGCTCCGCTGTCTGGGCACTTCTCAGCACCTCAAGGGGAGGTT
CGGCGGCGGCTACTCAATCGAGGCGAGGAATTAGCTCTGTAAGCTAGCCA
GACTCTCTCTTTCAATAAATTTAGCGTATCTTCTTACGACCGCACGCACC
CCCAAGTTACGAGTATTGCATATCTATTGAGAGAAAAAAAACCACCCCGT
GTCACGAAAAATACCTGCACGCTTCCTCACCCACCCTACCCTACCCTACC
CTACCCTACCCTACCCTACCTCATCTTAAACTAACTGTAACTAATAGAGG
TAAAATACCGCCTGCATTCACTCGAACGAAACGCCTATTTTTGTATGTGT
GCTTTCCTTATGGGGGGGTGGGGGGCTAAATATTGCAATTCGAACGTCGA
CAAAGACGATTTTTCTCTTCCGGTCCGCGCGAAATACACCATCTCTCGTT
CAGGTTCGCTGCCCCTCGACTTCGATGCCCCGAGTTACGGACATGATCGC
CAGTCTTTCGCCGCTGGCCAGGCTCGAGGAGATGCATCCGACGCTCGCAA
AGTTCAGCATCCCACAGGGAGGCTCCAAGTCTTCCGGTGCTAAAGAAATC
CGTGAGAGCGGCGGTGGAAAGTGCTCTTCCTCTTCCGGGGAGCTGAGCTT
GTCTACCGCATTCGAGACGATCGAGGCCAGCAAGGAGGAGTTGCAGGTGA
TAGCGTGGATGTACGGAGAGGGAGGAAAAGGGAAATGGGTAAGGGGCTGC
TTCCAGTTGGAAATATTCGTCTCTTTCGAAGGCTTGATAAGGCTCGCATG
CAGCTGAGAAAGATTCTCGCCGTTGTCAATAGACAGTAGCAAAATGTTTG
CGCACGCTTTTCCTGTGTTTTTAAAATCTCGATGCCAAATATTTCTCTCA
TACAGAACGGCAAACATCACAACGTCCTTTGTCTTTCGGCCCCTTTTTTC
GTCCTACTGATTTTCGTCGCGGACAACTCAGCGACAACCTGTCCGCCCCT
GTTCTTATGTGTTTCTTTTTAAAATATATCTAAATCTATATTTGTACCCC
TCCTATGCATGCCATGCCATGCCAGCTGTGGGATTACTCCATCAGCCAAG
CCACCCTGGAGACCATCTTCATGAGTTTTGCCAAGGATCAAGAAGAAGAA
ACGGCGAACGTGCCCGGGGTAAGCTACACCGACTCCACCAACCTCGGGCG
CGAGGCCCGAGCCGTCCCGGTCGTCCCTCGGCGTGACCATCGGACCGCCG
GCAGACGCGTCGGACAGCAGCCCTCCCCCGCGCCGTCTATGGACGTTGAA
ATGGGCTTGATGGGCAGCAGCAGAGGGTACAGCAGATTAATGGTGACGGA
AACGACGGAGATCGAGTGAACCAATCGCGATGAATGGATGGTAAAGGGCA
ACGGGCGGAGGGGGTATATACGGTGCGGTCGTGGGTTAGATGGTGGGCGA
TACGCAATTTGACGGTTGGCTATATCGATCTTCTGCTTTCTCCATCGTAT
TAAATTAGACGAACGGATTAGGTGGCTACTTGCCACGTATCGCTTTTGTC
TATAGTCTATATAATTCTTGCGTATAGGGGTATAATGTATACGGTAGTGC
GGATGACCTCACCGAAGGTGCCAGATTGGACTCTCTTTTGTTGGTCATGT
CTGCCTAGTCGCCAAAAGCCACTCGGAAATTCGGCAGCACCTTGCAGATA
TTTTTCAGGCCCAGCGCGTTGCGATCAAATCTTGAGGAGTTTTTTTACGG
TTGTGATGTCGCTGTTTTTGTTGTTTTATGGGGAGAGGGAGGGTTCGCAC
CCCTAATGTGTCCACAACGGCGTGATGACCTTGTGGCTCGGCATTTTCCC
CTTGTGTTGTACCGGTATTTCAGTCTGTTGCGTGAACCTTTTCGTGACCA
TCTCTACAGCGTAGTGTACTTGGGGGTAGTTAAGTGTGATTGGTGAGGGG
TGGGGTTATCGCCCGTAGCTGCTCGAACTCACAAAGCCCGACTTCTGGGG
GGAAATATTTTGGAGCGCTACTTCTTTGCTTTTGGAGTGAGACTTGGACA
CTCTTTTAGGTCTCCCCCTCATGAAATGGGAATGATATGGTATGGTATGG
TCGCCGTACGATGGGTAGCTGGGTCGGCTCGGTGAGTTCGGGGCATGTGA
ACGATCAGCACAAGGCAGCTCGCCTGGGTTCTTGGTGGACCTTCCTGATG
ATGCTGCTGTTAATGATGACGATTATGGAAATTTGCGACCAGGCATACCG
TGTCTCGGTGTCTTTAAACGGCGTTGTTTCTATTGTCCGGTTATTAAGGG
GGATTTTATTTTCGAAGCTGTTGTTCCCAATTTCTGACAAAGAAGCTGAA
TCACTAGTCAGAGAGAGGCGTGTTGGACCGTCCTGTCCTGTCCGGTCTCC
AAAACAATCCACCAACCAACACGGATTTCACTACCAGGAGTTACACACTG
GCTCTCGACGACTATTGACGGCTATTCGCGGCTTCCCCCGGTGAAGAGTT
ACAAATGATCGGTGTTCCAAGTGTTGATAAGGGTTGTGACGTTCAAAATG
AATAGTCCATAATTGTATCTTTCCACGGACATCCCACCTTATTGTAACCA
CTTTTTATTGAAATCATGGATCCTACCCCCCTTCTGTAGTATAAGCACCC
CGGTGATACATCGGGTAACCCTTGGAATTGGAAATATAATTAGAGATGGA
CGTCTTCGTTGGCAAAACCCGGGGATTTTGGGCCCATAGTTTGTATACCA
TGGGAAGGCGGTATGCTAGGGGGCGTAGGACATGCACCCCCATCGCCCAC
TGTAGATCGTGGGCGGGGGTGTATTTGAGATGACGTTGTAGTGTGTGCGT
CCCGTGAAATACTTGACCTCGGGAGAAATAAGCCTAATTTTTTCGTTTAT
GTCATTACAATTTTGGGATAACCTCGCAGGTTCATATGTCGTAAGTTGAG
GTGTTAATGGCGACTCAATATTGGGATAGGGATGGCAGAGATGCCCTAGC
ATCGTCGAGAAACGCCTCGTTTTATGCCATAGCGTTTTGTGCCTTTGCAC
AGTAATTATTTTGCACTTAACTTGTGAATTTTTATAAACTGGAACACGCC
GTTAAACAGGCGAAGGCCTAGTTGTACATTTACGTAGCAGAGAGTAGTGT
ATGTAGTACGTTAGACGAAAAAGGGTACATTTATAAAAAGTACGTCCGAT
AAGGGTATATTTAGTAAACATAAAGGCGTTCATGTAGACTACGTCAAGAT
CTCCAAGGATCAAGCAGTCGTAGTAGATGCTTCATGCGACCGGTGATTCG
TTATAAAAAGAGAAGATGGAATATATGTATGGGAAATTTT
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Coding sequence (CDS) from alignment at H-elongata_contig10969:2..5191-

>mRNA_H-elongata_contig10969.781.1 ID=mRNA_H-elongata_contig10969.781.1|Name=mRNA_H-elongata_contig10969.781.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at H-elongata_contig10969:2..5191- (Himanthalia elongata Himel1 dioecious)
ATGGATCCCGGAGCCAGGAGATGGATCCCGGAGCCAGGAGGTCGATGTGG
GAGGTGATATCGTCCCTTTCGGCGACCCGCAGTGTCATTCTCACAACCCA
CTCCATGGAAGAGTGCGAGGCCGTATGCGACAGGCTGGGCATCATGGTCG
GCGGGAGGCTCCGCTGTCTGGGCACTTCTCAGCACCTCAAGGGGAGGTTC
GGCGGCGGCTACTCAATCGAGGTCGATGTGGGAGGTGATATCGTCCCTTT
CGGCGACCCGCAGTGTCATTCTCACAACCCACTCCATGGAAGAGTGCGAG
GCCGTATGCGACAGGCTGGGCATCATGGTCGGCGGGAGGCTCCGCTGTCT
GGGCACTTCTCAGCACCTCAAGGGGAGGTTCGGCGGCGGCTACTCAATCG
AGGTTCGCTGCCCCTCGACTTCGATGCCCCGAGTTACGGACATGATCGCC
AGTCTTTCGCCGCTGGCCAGGCTCGAGGAGATGCATCCGACGCTCGCAAA
GTTCAGCATCCCACAGGGAGGCTCCAAGTCTTCCGGTGCTAAAGAAATCC
GTGAGAGCGGCGGTGGAAAGTGCTCTTCCTCTTCCGGGGAGCTGAGCTTG
TCTACCGCATTCGAGACGATCGAGGCCAGCAAGGAGGAGTTGCAGGTTCG
CTGCCCCTCGACTTCGATGCCCCGAGTTACGGACATGATCGCCAGTCTTT
CGCCGCTGGCCAGGCTCGAGGAGATGCATCCGACGCTCGCAAAGTTCAGC
ATCCCACAGGGAGGCTCCAAGTCTTCCGGTGCTAAAGAAATCCGTGAGAG
CGGCGGTGGAAAGTGCTCTTCCTCTTCCGGGGAGCTGAGCTTGTCTACCG
CATTCGAGACGATCGAGGCCAGCAAGGAGGAGTTGCAGCTGTGGGATTAC
TCCATCAGCCAAGCCACCCTGGAGACCATCTTCATGAGTTTTGCCAAGGA
TCAAGAAGAAGAAACGGCGAACGTGCCCGGGGTAAGCTACACCGACTCCA
CCAACCTCGGGCGCGAGGCCCGAGCCGTCCCGGTCGTCCCTCGGCGTGAC
CATCGGACCGCCGGCAGACGCGTCGGACAGCAGCCCTCCCCCGCGCCGTC
TATGGACGTTGAAATGGGCTTGATGGGCAGCAGCAGAGGGTACAGCAGAT
TAATGGTGACGGAAACGACGGAGATCGAGTGACTGTGGGATTACTCCATC
AGCCAAGCCACCCTGGAGACCATCTTCATGAGTTTTGCCAAGGATCAAGA
AGAAGAAACGGCGAACGTGCCCGGGGTAAGCTACACCGACTCCACCAACC
TCGGGCGCGAGGCCCGAGCCGTCCCGGTCGTCCCTCGGCGTGACCATCGG
ACCGCCGGCAGACGCGTCGGACAGCAGCCCTCCCCCGCGCCGTCTATGGA
CGTTGAAATGGGCTTGATGGGCAGCAGCAGAGGGTACAGCAGATTAATGG
TGACGGAAACGACGGAGATCGAGTGA
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